flowDensity

DOI: 10.18129/B9.bioc.flowDensity    

This is the development version of flowDensity; for the stable release version, see flowDensity.

Sequential Flow Cytometry Data Gating

Bioconductor version: Development (3.17)

This package provides tools for automated sequential gating analogous to the manual gating strategy based on the density of the data.

Author: Mehrnoush Malek,M. Jafar Taghiyar

Maintainer: Mehrnoush Malek <mmalekes at bccrc.ca>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("flowDensity")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowDensity")

 

HTML	R Script	Introduction to automated gating
PDF		Reference Manual

Details

biocViews	Bioinformatics, Cancer, CellBiology, Clustering, DataRepresentation, DensityGating, FlowCytData, FlowCytometry, Software, StemCell
Version	1.33.0
In Bioconductor since	BioC 3.0 (R-3.1) (8 years)
License	Artistic-2.0
Depends
Imports	flowCore, graphics, flowViz(>= 1.46.1), car, sp, rgeos, gplots, RFOC, flowWorkspace(>= 3.33.1), methods, stats, grDevices
LinkingTo
Suggests	knitr, rmarkdown
SystemRequirements	xml2, GNU make, C++11
Enhances
URL
Depends On Me
Imports Me	cyanoFilter, ddPCRclust, flowCut
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	flowDensity_1.33.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/flowDensity
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/flowDensity
Package Short Url	https://bioconductor.org/packages/flowDensity/
Package Downloads Report	Download Stats