DOI: 10.18129/B9.bioc.epistack    

This is the development version of epistack; for the stable release version, see epistack.

Heatmaps of Stack Profiles from Epigenetic Signals

Bioconductor version: Development (3.17)

The epistack package main objective is the visualizations of stacks of genomic tracks (such as, but not restricted to, ChIP-seq, ATAC-seq, DNA methyation or genomic conservation data) centered at genomic regions of interest.

Author: SACI Safia [aut], DEVAILLY Guillaume [cre]

Maintainer: DEVAILLY Guillaume <gdevailly at hotmail.com>

Citation (from within R, enter citation("epistack")):


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biocViews ChIPSeq, GeneExpression, Preprocessing, RNASeq, Software
Version 1.5.0
In Bioconductor since BioC 3.14 (R-4.1) (1 year)
License MIT + file LICENSE
Depends R (>= 4.1)
Imports GenomicRanges, SummarizedExperiment, BiocGenerics, S4Vectors, IRanges, viridisLite, graphics, plotrix, grDevices, stats, methods
Suggests testthat (>= 3.0.0), BiocStyle, knitr, rmarkdown, EnrichedHeatmap, biomaRt, rtracklayer, covr, vdiffr, magick
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Source Package epistack_1.5.0.tar.gz
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Package Short Url https://bioconductor.org/packages/epistack/
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