EnrichedHeatmap

DOI: 10.18129/B9.bioc.EnrichedHeatmap    

This is the development version of EnrichedHeatmap; for the stable release version, see EnrichedHeatmap.

Making Enriched Heatmaps

Bioconductor version: Development (3.17)

Enriched heatmap is a special type of heatmap which visualizes the enrichment of genomic signals on specific target regions. Here we implement enriched heatmap by ComplexHeatmap package. Since this type of heatmap is just a normal heatmap but with some special settings, with the functionality of ComplexHeatmap, it would be much easier to customize the heatmap as well as concatenating to a list of heatmaps to show correspondance between different data sources.

Author: Zuguang Gu [aut, cre]

Maintainer: Zuguang Gu <z.gu at dkfz.de>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("EnrichedHeatmap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	Coverage, GenomeAnnotation, Sequencing, Software, Visualization
Version	1.29.0
In Bioconductor since	BioC 3.2 (R-3.2) (7 years)
License	MIT + file LICENSE
Depends	R (>= 3.6.0), methods, grid, ComplexHeatmap(>= 2.11.0), GenomicRanges
Imports	matrixStats, stats, GetoptLong, Rcpp, utils, locfit, circlize (>= 0.4.5), IRanges
LinkingTo	Rcpp
Suggests	testthat (>= 0.3), knitr, markdown, rmarkdown, genefilter, RColorBrewer
SystemRequirements
Enhances
URL	https://github.com/jokergoo/EnrichedHeatmap
Depends On Me
Imports Me	extraChIPs, profileplyr
Suggests Me	ComplexHeatmap, epistack, InteractiveComplexHeatmap
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/EnrichedHeatmap
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/EnrichedHeatmap
Package Short Url	https://bioconductor.org/packages/EnrichedHeatmap/
Package Downloads Report	Download Stats