DOI: 10.18129/B9.bioc.phemd  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see phemd.

Phenotypic EMD for comparison of single-cell samples

Bioconductor version: 3.16

Package for comparing and generating a low-dimensional embedding of multiple single-cell samples.

Author: William S Chen

Maintainer: William S Chen <wil.yum.chen at>

Citation (from within R, enter citation("phemd")):


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biocViews Clustering, ComparativeGenomics, DataRepresentation, DimensionReduction, MultipleComparison, Proteomics, Sequencing, SingleCell, Software, Transcriptomics, Visualization
Version 1.14.1
In Bioconductor since BioC 3.9 (R-3.6) (4 years)
License GPL-2
Depends R (>= 3.5), monocle, Seurat
Imports SingleCellExperiment, RColorBrewer, igraph, transport, pracma, cluster, Rtsne, destiny, RANN, ggplot2, maptree, pheatmap, scatterplot3d, VGAM, methods, grDevices, graphics, stats, utils, cowplot, S4Vectors, BiocGenerics, SummarizedExperiment, Biobase, phateR, reticulate
Suggests knitr
Depends On Me
Imports Me
Suggests Me
Links To Me
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