DOI: 10.18129/B9.bioc.destiny  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see destiny.

Creates diffusion maps

Bioconductor version: 3.16

Create and plot diffusion maps.

Author: Philipp Angerer [cre, aut] , Laleh Haghverdi [ctb], Maren Büttner [ctb] , Fabian Theis [ctb] , Carsten Marr [ctb] , Florian Büttner [ctb]

Maintainer: Philipp Angerer <phil.angerer at>

Citation (from within R, enter citation("destiny")):


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HTML R Script destiny 2.0 brought the Diffusion Pseudo Time (DPT) class
HTML R Script destiny main vignette: Start here!
HTML R Script detecting relevant genes with destiny 3
HTML R Script Reproduce the Diffusion Map vignette with the supplied data()
HTML R Script The effects of a global vs. local kernel
HTML R Script tidyverse and ggplot integration with destiny
PDF   Reference Manual
Text   NEWS


biocViews CellBasedAssays, CellBiology, Clustering, Software, Visualization
Version 3.12.0
In Bioconductor since BioC 3.2 (R-3.2) (7.5 years)
License GPL-3
Depends R (>= 3.4.0)
Imports methods, graphics, grDevices, grid, utils, stats, Matrix, Rcpp (>= 0.10.3), RcppEigen, RSpectra (>= 0.14-0), irlba, pcaMethods, Biobase, BiocGenerics, SummarizedExperiment, SingleCellExperiment, ggplot2, ggplot.multistats, tidyr, tidyselect, ggthemes, VIM, knn.covertree, proxy, RcppHNSW, smoother, scales, scatterplot3d
LinkingTo Rcpp, RcppEigen, grDevices
Suggests knitr, rmarkdown, igraph, testthat, FNN, tidyverse, gridExtra, cowplot, conflicted, viridis, rgl, scRNAseq,, scran, repr
SystemRequirements C++11
Enhances rgl, SingleCellExperiment
Depends On Me
Imports Me CytoTree, phemd
Suggests Me CelliD, CellTrails, monocle
Links To Me
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