DOI: 10.18129/B9.bioc.h5vc  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see h5vc.

Managing alignment tallies using a hdf5 backend

Bioconductor version: 3.16

This package contains functions to interact with tally data from NGS experiments that is stored in HDF5 files.

Author: Paul Theodor Pyl

Maintainer: Paul Theodor Pyl <paul.theodor.pyl at gmail.com>

Citation (from within R, enter citation("h5vc")):


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HTML R Script Building a minimal genome browser with h5vc and shiny
HTML R Script h5vc -- Tour
PDF   Reference Manual


biocViews Software
Version 2.32.0
In Bioconductor since BioC 2.13 (R-3.0) (9.5 years)
License GPL (>= 3)
Depends grid, gridExtra, ggplot2
Imports rhdf5, reshape, S4Vectors, IRanges, Biostrings, Rsamtools(>= 2.13.1), methods, GenomicRanges, abind, BiocParallel, BatchJobs, h5vcData, GenomeInfoDb
LinkingTo Rhtslib(>= 1.99.1)
Suggests knitr, locfit, BSgenome.Hsapiens.UCSC.hg19, biomaRt, BSgenome.Hsapiens.NCBI.GRCh38, RUnit, BiocGenerics, rmarkdown
SystemRequirements GNU make
Depends On Me
Imports Me
Suggests Me h5vcData
Links To Me
Build Report  

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Follow Installation instructions to use this package in your R session.

Source Package h5vc_2.32.0.tar.gz
Windows Binary h5vc_2.32.0.zip
macOS Binary (x86_64) h5vc_2.32.0.tgz
macOS Binary (arm64) h5vc_2.32.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/h5vc
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/h5vc
Bioc Package Browser https://code.bioconductor.org/browse/h5vc/
Package Short Url https://bioconductor.org/packages/h5vc/
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