DOI: 10.18129/B9.bioc.enrichplot  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see enrichplot.

Visualization of Functional Enrichment Result

Bioconductor version: 3.16

The 'enrichplot' package implements several visualization methods for interpreting functional enrichment results obtained from ORA or GSEA analysis. It is mainly designed to work with the 'clusterProfiler' package suite. All the visualization methods are developed based on 'ggplot2' graphics.

Author: Guangchuang Yu [aut, cre] , Erqiang Hu [ctb] , Chun-Hui Gao [ctb]

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Citation (from within R, enter citation("enrichplot")):


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HTML enrichplot
PDF   Reference Manual
Text   NEWS


biocViews Annotation, GO, GeneSetEnrichment, KEGG, Pathways, Software, Visualization
Version 1.18.4
In Bioconductor since BioC 3.7 (R-3.5) (5 years)
License Artistic-2.0
Depends R (>= 3.5.0)
Imports aplot (>= 0.1.4), DOSE(>= 3.16.0), ggnewscale, ggplot2, ggraph, graphics, grid, igraph, methods, plyr, purrr, RColorBrewer, reshape2, rlang, stats, utils, scatterpie, shadowtext, GOSemSim, magrittr, ggtree, yulab.utils (>= 0.0.4)
Suggests clusterProfiler, dplyr, europepmc, ggupset, knitr, rmarkdown, org.Hs.eg.db, prettydoc, tibble, tidyr, ggforce, AnnotationDbi, ggplotify, ggridges, grDevices, gridExtra, ggrepel (>= 0.9.0), ggstar, treeio, scales, tidytree, ggtreeExtra, tidydr
URL https://yulab-smu.top/biomedical-knowledge-mining-book/
BugReports https://github.com/GuangchuangYu/enrichplot/issues
Depends On Me maEndToEnd
Imports Me ChIPseeker, clusterProfiler, debrowser, ExpHunterSuite, MAGeCKFlute, meshes, MicrobiomeProfiler, multiSight, ReactomePA
Suggests Me methylGSA, pareg
Links To Me
Build Report  

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Source Package enrichplot_1.18.4.tar.gz
Windows Binary enrichplot_1.18.4.zip
macOS Binary (x86_64) enrichplot_1.18.4.tgz
macOS Binary (arm64) enrichplot_1.18.4.tgz
Source Repository git clone https://git.bioconductor.org/packages/enrichplot
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/enrichplot
Bioc Package Browser https://code.bioconductor.org/browse/enrichplot/
Package Short Url https://bioconductor.org/packages/enrichplot/
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