DOI: 10.18129/B9.bioc.MicrobiomeProfiler  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see MicrobiomeProfiler.

An R/shiny package for microbiome functional enrichment analysis

Bioconductor version: 3.16

This is an R/shiny package to perform functional enrichment analysis for microbiome data. This package was based on clusterProfiler. Moreover, MicrobiomeProfiler support KEGG enrichment analysis, COG enrichment analysis, Microbe-Disease association enrichment analysis, Metabo-Pathway analysis.

Author: Meijun Chen [aut, cre] , Guangchuang Yu [aut, ths]

Maintainer: Meijun Chen <mjchen1996 at outlook.com>

Citation (from within R, enter citation("MicrobiomeProfiler")):


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HTML R Script MicrobiomeProfiler
PDF   Reference Manual


biocViews KEGG, Microbiome, Software, Visualization
Version 1.4.0
In Bioconductor since BioC 3.14 (R-4.1) (1.5 years)
License GPL-2
Depends R (>= 4.1.0)
Imports clusterProfiler(>= 4.0.2), config, DT, enrichplot, golem, magrittr, shiny (>= 1.6.0), shinyWidgets, shinycustomloader, htmltools, ggplot2, graphics, utils
Suggests rmarkdown, knitr, testthat (>= 3.0.0)
URL https://github.com/YuLab-SMU/MicrobiomeProfiler/
BugReports https://github.com/YuLab-SMU/MicrobiomeProfiler/issues
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Source Package MicrobiomeProfiler_1.4.0.tar.gz
Windows Binary MicrobiomeProfiler_1.4.0.zip
macOS Binary (x86_64) MicrobiomeProfiler_1.4.0.tgz
macOS Binary (arm64) MicrobiomeProfiler_1.4.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MicrobiomeProfiler
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MicrobiomeProfiler
Bioc Package Browser https://code.bioconductor.org/browse/MicrobiomeProfiler/
Package Short Url https://bioconductor.org/packages/MicrobiomeProfiler/
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