DOI: 10.18129/B9.bioc.beachmat  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see beachmat.

Compiling Bioconductor to Handle Each Matrix Type

Bioconductor version: 3.16

Provides a consistent C++ class interface for reading from and writing data to a variety of commonly used matrix types. Ordinary matrices and several sparse/dense Matrix classes are directly supported, third-party S4 classes may be supported by external linkage, while all other matrices are handled by DelayedArray block processing.

Author: Aaron Lun [aut, cre], Hervé Pagès [aut], Mike Smith [aut]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at>

Citation (from within R, enter citation("beachmat")):


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HTML R Script 1. Developer guide
HTML R Script 2. Reading data from R matrices in C++ (v2)
HTML R Script 3. Writing data into R matrix objects (v2)
HTML R Script 4. Supporting arbitrary matrix classes (v2)
PDF   Reference Manual
Text   NEWS


biocViews DataImport, DataRepresentation, Infrastructure, Software
Version 2.14.2
In Bioconductor since BioC 3.6 (R-3.4) (5.5 years)
License GPL-3
Imports methods, DelayedArray(>= 0.15.14), BiocGenerics, Matrix, Rcpp
LinkingTo Rcpp
Suggests testthat, BiocStyle, knitr, rmarkdown, rcmdcheck, BiocParallel, HDF5Array
SystemRequirements C++11
Depends On Me
Imports Me batchelor, BiocSingular, DropletUtils, mumosa, scater, scran, scuttle, SingleR
Suggests Me bsseq, glmGamPoi, mbkmeans, PCAtools, scCB2
Links To Me BiocSingular, bsseq, DropletUtils, glmGamPoi, mbkmeans, PCAtools, scran, scuttle, SingleR
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