DOI: 10.18129/B9.bioc.MSstatsConvert  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see MSstatsConvert.

Import Data from Various Mass Spectrometry Signal Processing Tools to MSstats Format

Bioconductor version: 3.16

MSstatsConvert provides tools for importing reports of Mass Spectrometry data processing tools into R format suitable for statistical analysis using the MSstats and MSstatsTMT packages.

Author: Mateusz Staniak [aut, cre], Meena Choi [aut], Ting Huang [aut], Olga Vitek [aut]

Maintainer: Mateusz Staniak <mtst at>

Citation (from within R, enter citation("MSstatsConvert")):


To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script Working with MSstatsConvert
PDF   Reference Manual
Text   NEWS


biocViews DataImport, MassSpectrometry, Proteomics, QualityControl, Software
Version 1.8.3
In Bioconductor since BioC 3.12 (R-4.0) (2.5 years)
License Artistic-2.0
Depends R (>= 4.0)
Imports data.table, log4r, methods, checkmate, utils, stringi
Suggests tinytest, covr, knitr, rmarkdown
Depends On Me
Imports Me MSstats, MSstatsLiP, MSstatsPTM, MSstatsShiny, MSstatsTMT
Suggests Me
Links To Me
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Source Package MSstatsConvert_1.8.3.tar.gz
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macOS Binary (x86_64) MSstatsConvert_1.8.3.tgz
macOS Binary (arm64) MSstatsConvert_1.8.3.tgz
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