DOI: 10.18129/B9.bioc.MSstats  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see MSstats.

Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics Experiments

Bioconductor version: 3.16

A set of tools for statistical relative protein significance analysis in DDA, SRM and DIA experiments.

Author: Meena Choi [aut, cre], Mateusz Staniak [aut], Tsung-Heng Tsai [aut], Ting Huang [aut], Olga Vitek [aut]

Maintainer: Meena Choi <mnchoi67 at>

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HTML R Script MSstats: Protein/Peptide significance analysis
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biocViews ImmunoOncology, MassSpectrometry, Normalization, Proteomics, QualityControl, Software, TimeCourse
Version 4.6.5
In Bioconductor since BioC 2.13 (R-3.0) (9.5 years)
License Artistic-2.0
Depends R (>= 4.0)
Imports MSstatsConvert, data.table, checkmate, MASS, limma, lme4, preprocessCore, survival, utils, Rcpp, ggplot2, ggrepel, gplots, marray, stats, grDevices, graphics, methods, statmod
LinkingTo Rcpp, RcppArmadillo
Suggests BiocStyle, knitr, rmarkdown, tinytest, covr, markdown
Depends On Me
Imports Me artMS, MSstatsLiP, MSstatsPTM, MSstatsSampleSize, MSstatsShiny, MSstatsTMT
Suggests Me
Links To Me
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