pandaR

DOI: 10.18129/B9.bioc.pandaR    

PANDA Algorithm

Bioconductor version: Release (3.14)

Runs PANDA, an algorithm for discovering novel network structure by combining information from multiple complementary data sources.

Author: Dan Schlauch, Joseph N. Paulson, Albert Young, John Quackenbush, Kimberly Glass

Maintainer: Joseph N. Paulson <paulson.joseph at gene.com>, Dan Schlauch <dschlauch at genospace.com>

Citation (from within R, enter citation("pandaR")):

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("pandaR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pandaR")

 

HTML R Script pandaR Package
PDF   Reference Manual

Details

biocViews GeneExpression, GeneRegulation, GraphAndNetwork, Microarray, Network, NetworkInference, Software, StatisticalMethod, Transcription
Version 1.26.0
In Bioconductor since BioC 3.1 (R-3.2) (7 years)
License GPL-2
Depends R (>= 3.0.0), methods, Biobase, BiocGenerics
Imports matrixStats, igraph, ggplot2, grid, reshape, plyr, RUnit, hexbin
LinkingTo
Suggests knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package pandaR_1.26.0.tar.gz
Windows Binary pandaR_1.26.0.zip
macOS 10.13 (High Sierra) pandaR_1.26.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/pandaR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/pandaR
Package Short Url https://bioconductor.org/packages/pandaR/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.14 Source Archive

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: