targetedGenes {pandaR} | R Documentation |
Gets a set of genes targeted by a specified transcription factor. This function can be applied to a graph that is not complete, subsetting the edges which have non-zero edge weight. See function topEdges for dichotomizing edgeweights.
targetedGenes(x, tfs)
x |
an object of class "panda" |
tfs |
transcription factors to query |
A vector of targeted genes
data(pandaToyData) pandaRes <- panda(pandaToyData$motif, pandaToyData$expression,pandaToyData$ppi,hamming=.001) topPandaRes <- topedges(pandaRes,1000) targetedGenes(topPandaRes,c("AR","ELK1")) data(pandaResult) topPandaRes <- topedges(pandaResult,1000)