graph

DOI: 10.18129/B9.bioc.graph    

graph: A package to handle graph data structures

Bioconductor version: Release (3.14)

A package that implements some simple graph handling capabilities.

Author: R. Gentleman, Elizabeth Whalen, W. Huber, S. Falcon

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("graph")):

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("graph")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("graph")

 

PDF R Script Attributes for Graph Objects
PDF R Script clusterGraph and distGraph
PDF R Script Graph
PDF R Script Graph Design
PDF R Script graphBAM and MultiGraph classes
PDF   Reference Manual

Details

biocViews GraphAndNetwork, Software
Version 1.72.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 17 years)
License Artistic-2.0
Depends R (>= 2.10), methods, BiocGenerics(>= 0.13.11)
Imports stats, stats4, utils
LinkingTo
Suggests SparseM (>= 0.36), XML, RBGL, RUnit, cluster
SystemRequirements
Enhances Rgraphviz
URL
Depends On Me apComplex, biocGraph, BioMVCClass, BioNet, BLMA, CellNOptR, clipper, CNORfeeder, EnrichmentBrowser, flowMerge, gaggle, GOstats, GraphAT, GRridge, GSEABase, hypergraph, keggorthology, maigesPack, MineICA, pathRender, Pigengene, pkgDepTools, PoTRA, ppiData, RbcBook1, RBGL, RBioinf, RCyjs, Rgraphviz, ROntoTools, SNAData, SRAdb, topGO, vtpnet, yeastExpData
Imports Me alpine, AnnotationHubData, BgeeDB, BiocCheck, biocGraph, BiocOncoTK, BiocPkgTools, biocViews, BioPlex, bnem, CAMERA, Category, categoryCompare, chimeraviz, ChIPpeakAnno, CHRONOS, CytoML, DAPAR, dce, DEGraph, DEsubs, epiNEM, EventPointer, fgga, flowCL, flowClust, flowUtils, flowWorkspace, gage, GAPGOM, GeneNetworkBuilder, GOSim, GraphAT, graphite, hyperdraw, KEGGgraph, keggorthology, keggorthology, MIGSA, mirIntegrator, mnem, NCIgraph, NeighborNet, netresponse, OncoSimulR, ontoProc, openCyto, oposSOM, OrganismDbi, pathview, PFP, PhenStat, pkgDepTools, ppiStats, pwOmics, qpgraph, RCy3, RGraph2js, RpsiXML, rsbml, Rtreemix, SplicingGraphs, Streamer, trackViewer, VariantFiltering
Suggests Me AnnotationDbi, DEGraph, EBcoexpress, ecolitk, GeneAnswers, gwascat, KEGGlincs, MLP, NetPathMiner, rBiopaxParser, rTRM, S4Vectors, SPIA, VariantTools
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package graph_1.72.0.tar.gz
Windows Binary graph_1.72.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra) graph_1.72.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/graph
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/graph
Package Short Url https://bioconductor.org/packages/graph/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.14 Source Archive

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