geNetClassifier

DOI: 10.18129/B9.bioc.geNetClassifier    

Classify diseases and build associated gene networks using gene expression profiles

Bioconductor version: Release (3.14)

Comprehensive package to automatically train and validate a multi-class SVM classifier based on gene expression data. Provides transparent selection of gene markers, their coexpression networks, and an interface to query the classifier.

Author: Sara Aibar, Celia Fontanillo and Javier De Las Rivas. Bioinformatics and Functional Genomics Group. Cancer Research Center (CiC-IBMCC, CSIC/USAL). Salamanca. Spain.

Maintainer: Sara Aibar <saibar at usal.es>

Citation (from within R, enter citation("geNetClassifier")):

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("geNetClassifier")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("geNetClassifier")

 

PDF R Script geNetClassifier-vignette
PDF   Reference Manual
Text   NEWS

Details

biocViews Classification, DifferentialExpression, Microarray, Software
Version 1.34.0
In Bioconductor since BioC 2.12 (R-3.0) (9 years)
License GPL (>= 2)
Depends R (>= 2.10.1), Biobase(>= 2.5.5), EBarrays, minet, methods
Imports e1071, graphics, grDevices
LinkingTo
Suggests leukemiasEset, RUnit, BiocGenerics
SystemRequirements
Enhances RColorBrewer, igraph, infotheo
URL http://www.cicancer.org
Depends On Me
Imports Me bioCancer, canceR
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package geNetClassifier_1.34.0.tar.gz
Windows Binary geNetClassifier_1.34.0.zip
macOS 10.13 (High Sierra) geNetClassifier_1.34.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/geNetClassifier
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/geNetClassifier
Package Short Url https://bioconductor.org/packages/geNetClassifier/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.14 Source Archive

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: