canceR

DOI: 10.18129/B9.bioc.canceR    

A Graphical User Interface for accessing and modeling the Cancer Genomics Data of MSKCC

Bioconductor version: Release (3.14)

The package is user friendly interface based on the cgdsr and other modeling packages to explore, compare, and analyse all available Cancer Data (Clinical data, Gene Mutation, Gene Methylation, Gene Expression, Protein Phosphorylation, Copy Number Alteration) hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center (MSKCC).

Author: Karim Mezhoud. Nuclear Safety & Security Department. Nuclear Science Center of Tunisia.

Maintainer: Karim Mezhoud <kmezhoud at gmail.com>

Citation (from within R, enter citation("canceR")):

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("canceR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("canceR")

 

HTML R Script canceR: A Graphical User Interface for accessing and modeling the Cancer Genomics Data of MSKCC
PDF   Reference Manual
Text   NEWS

Details

biocViews Clustering, GO, GUI, GeneExpression, GeneSetEnrichment, KEGG, MultipleComparison, Software
Version 1.28.04
In Bioconductor since BioC 3.1 (R-3.2) (7 years)
License GPL-2
Depends R (>= 4.1), tcltk, cgdsr
Imports GSEABase, tkrplot, geNetClassifier, RUnit, Formula, rpart, survival, Biobase, phenoTest, circlize, plyr, graphics, stats, utils, grDevices
LinkingTo
Suggests testthat (>= 3.1), knitr, rmarkdown, BiocStyle
SystemRequirements Tktable, BWidget
Enhances
URL
BugReports https://github.com/kmezhoud/canceR/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package canceR_1.28.04.tar.gz
Windows Binary canceR_1.28.04.zip
macOS 10.13 (High Sierra) canceR_1.28.04.tgz
Source Repository git clone https://git.bioconductor.org/packages/canceR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/canceR
Package Short Url https://bioconductor.org/packages/canceR/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.14 Source Archive

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: