allenpvc

DOI: 10.18129/B9.bioc.allenpvc    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see allenpvc.

GEO accession data GSE71585 as a SingleCellExperiment

Bioconductor version: 3.10

Celular taxonomy of the primary visual cortex in adult mice based on single cell RNA-sequencing from a study performed by the Allen Institute for Brain Science. In said study 49 transcriptomic cell types are identified.

Author: Diogo P. P. Branco

Maintainer: Diogo P. P. Branco <diogo.pp.branco at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("allenpvc")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("allenpvc")

 

HTML	R Script	Vignette Title
PDF		Reference Manual

Details

biocViews	ExperimentData, ExpressionData, RNASeqData, SingleCellData
Version	1.4.0
License	CC0
Depends	R (>= 3.5.0), AnnotationHub, ExperimentHub(>= 1.7.0), SingleCellExperiment
Imports
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	allenpvc_1.4.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/allenpvc
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/allenpvc
Package Short Url	https://bioconductor.org/packages/allenpvc/
Package Downloads Report	Download Stats