DOI: 10.18129/B9.bioc.graph    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see graph.

graph: A package to handle graph data structures

Bioconductor version: 3.10

A package that implements some simple graph handling capabilities.

Author: R. Gentleman, Elizabeth Whalen, W. Huber, S. Falcon

Maintainer: Bioconductor Package Maintainer <maintainer at>

Citation (from within R, enter citation("graph")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script Attributes for Graph Objects
PDF R Script clusterGraph and distGraph
PDF R Script Graph
PDF R Script Graph Design
PDF R Script graphBAM and MultiGraph classes
PDF   Reference Manual


biocViews GraphAndNetwork, Software
Version 1.64.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 15 years)
License Artistic-2.0
Depends R (>= 2.10), methods, BiocGenerics(>= 0.13.11)
Imports stats, stats4, utils
Suggests SparseM (>= 0.36), XML, RBGL, RUnit, cluster
Enhances Rgraphviz
Depends On Me apComplex, biocGraph, BioMVCClass, BioNet, BLMA, CellNOptR, clipper, CNORfeeder, EnrichmentBrowser, FEM, flowMerge, gaggle, GOFunction, GOstats, GraphAT, GRridge, GSEABase, hypergraph, keggorthology, maigesPack, MineICA, NetSAM, pathRender, Pigengene, pkgDepTools, PoTRA, ppiData, RbcBook1, RBGL, RBioinf, RCyjs, RDAVIDWebService, Rgraphviz, ROntoTools, RpsiXML, SNAData, SRAdb, topGO, vtpnet, yeastExpData
Imports Me alpine, AnalysisPageServer, BgeeDB, BiocCheck, biocGraph, BiocOncoTK, BiocPkgTools, biocViews, CAMERA, Category, categoryCompare, chimeraviz, ChIPpeakAnno, CHRONOS, CytoML, DAPAR, DEGraph, DEsubs, epiNEM, EventPointer, ExperimentHubData, FEM, flowCL, flowClust, flowUtils, flowWorkspace, gage, GAPGOM, GeneNetworkBuilder, GOFunction, GOSim, GraphAT, graphite, HTSanalyzeR, hyperdraw, KEGGgraph, keggorthology, keggorthology, MAGeCKFlute, MIGSA, mirIntegrator, mnem, NCIgraph, NeighborNet, nem, netresponse, OncoSimulR, ontoProc, openCyto, OrganismDbi, pathview, PCpheno, PhenStat, pkgDepTools, ppiStats, pwOmics, qpgraph, RchyOptimyx, RCy3, RGraph2js, rsbml, Rtreemix, signet, SplicingGraphs, Streamer, ToPASeq, trackViewer, VariantFiltering
Suggests Me AnnotationDbi, BiocCaseStudies, DEGraph, EBcoexpress, ecolitk, GeneAnswers, gwascat, KEGGlincs, MmPalateMiRNA, netbenchmark, NetPathMiner, rBiopaxParser, rTRM, S4Vectors, SPIA, TxRegInfra, VariantTools
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package graph_1.64.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) graph_1.64.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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