DOI: 10.18129/B9.bioc.GSEABase    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see GSEABase.

Gene set enrichment data structures and methods

Bioconductor version: 3.10

This package provides classes and methods to support Gene Set Enrichment Analysis (GSEA).

Author: Martin Morgan, Seth Falcon, Robert Gentleman

Maintainer: Bioconductor Package Maintainer <maintainer at>

Citation (from within R, enter citation("GSEABase")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script An introduction to GSEABase
PDF   Reference Manual
Text   NEWS


biocViews GO, GeneExpression, GeneSetEnrichment, GraphAndNetwork, KEGG, Software
Version 1.48.0
In Bioconductor since BioC 2.1 (R-2.6) (12.5 years)
License Artistic-2.0
Depends R (>= 2.6.0), BiocGenerics(>= 0.13.8), Biobase(>= 2.17.8), annotate(>= 1.45.3), methods, graph(>= 1.37.2)
Imports AnnotationDbi, XML
Suggests hgu95av2.db, GO.db,, Rgraphviz, ReportingTools, testthat, BiocStyle, knitr
Depends On Me AGDEX, BicARE, CCPROMISE, cpvSNP, gCMAP, GSVAdata, npGSEA, PROMISE, singscore, splineTimeR, TissueEnrich
Imports Me AUCell, BioCor, canceR, Category, categoryCompare, cellHTS2, EnrichmentBrowser, gCMAPWeb, gep2pep, GISPA, GlobalAncova, GmicR, GSRI, GSVA, HTSanalyzeR, MIGSA, miRSM, mogsa, oppar, PCpheno, phenoTest, POST, PROMISE, RcisTarget, ReportingTools, scTGIF, signatureSearch, SingscoreAMLMutations, slalom, TFutils
Suggests Me BiocCaseStudies, BiocSet, gage, globaltest, GOstats, GSAR, GSEAlm, MAST, PGSEA, phenoTest, singleCellTK, TFEA.ChIP
Links To Me
Build Report  

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Source Package GSEABase_1.48.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) GSEABase_1.48.0.tgz
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