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To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("HD2013SGI")
In most cases, you don't need to download the package archive at all.
HD2013SGI
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Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping
Bioconductor version: Release (3.1)
This package contains the experimental data and a complete executable transcript (vignette) of the analysis of the HCT116 genetic interaction matrix presented in the paper "Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping" by C. Laufer, B. Fischer, M. Billmann, W. Huber, M. Boutros; Nature Methods (2013) 10:427-31. doi: 10.1038/nmeth.2436.
Author: Bernd Fischer
Maintainer: Bernd Fischer <b.fischer at dkfz.de>
Citation (from within R,
enter citation("HD2013SGI")):
Installation
To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("HD2013SGI")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("HD2013SGI")
| R Script | HD2013SGI | |
| Reference Manual |
Details
| biocViews | CancerData, CellCulture, ColonCancerData, ExperimentData, HighThroughputImagingData, Homo_sapiens_Data, MicrotitrePlateAssayData |
| Version | 1.8.0 |
| License | Artistic-2.0 |
| Depends | R (>= 2.10.0), RColorBrewer, gplots, geneplotter, splots, limma, vcd, LSD, EBImage |
| Imports | |
| LinkingTo | |
| Suggests | BiocStyle |
| SystemRequirements | GNU make |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | HD2013SGI_1.8.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.6 (Snow Leopard) | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Package Short Url | http://bioconductor.org/packages/HD2013SGI/ |
| Package Downloads Report | Download Stats |
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