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This page was generated on 2024-02-29 11:37:08 -0500 (Thu, 29 Feb 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.3.2 Patched (2023-11-13 r85521) -- "Eye Holes" 4692
palomino4Windows Server 2022 Datacenterx644.3.2 (2023-10-31 ucrt) -- "Eye Holes" 4445
lconwaymacOS 12.7.1 Montereyx86_644.3.2 Patched (2023-11-01 r85457) -- "Eye Holes" 4466
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1612/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
puma 3.44.0  (landing page)
Xuejun Liu
Snapshot Date: 2024-02-28 14:05:05 -0500 (Wed, 28 Feb 2024)
git_url: https://git.bioconductor.org/packages/puma
git_branch: RELEASE_3_18
git_last_commit: 77047b5
git_last_commit_date: 2023-10-24 09:38:31 -0500 (Tue, 24 Oct 2023)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.1 Ventura / arm64see weekly results here

CHECK results for puma on palomino4


To the developers/maintainers of the puma package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/puma.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: puma
Version: 3.44.0
Command: F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:puma.install-out.txt --library=F:\biocbuild\bbs-3.18-bioc\R\library --no-vignettes --timings puma_3.44.0.tar.gz
StartedAt: 2024-02-29 05:14:35 -0500 (Thu, 29 Feb 2024)
EndedAt: 2024-02-29 05:19:39 -0500 (Thu, 29 Feb 2024)
EllapsedTime: 304.0 seconds
RetCode: 0
Status:   OK  
CheckDir: puma.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:puma.install-out.txt --library=F:\biocbuild\bbs-3.18-bioc\R\library --no-vignettes --timings puma_3.44.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'F:/biocbuild/bbs-3.18-bioc/meat/puma.Rcheck'
* using R version 4.3.2 (2023-10-31 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
    gcc.exe (GCC) 12.3.0
    GNU Fortran (GCC) 12.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'puma/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'puma' version '3.44.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'puma' can be installed ... OK
* used C compiler: 'gcc.exe (GCC) 12.3.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  'oligoClasses'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' calls in package code:
  'ROCR' 'limma' 'pumadata' 'snow'
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
':::' calls which should be '::':
  'affy:::mm' 'affy:::pm' 'affy:::probeNames' 'oligo:::mm' 'oligo:::pm'
  'oligo:::probeNames' 'oligo:::rma'
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
PMmmgmos: no visible binding for global variable 'median'
PMmmgmos: no visible global function definition for 'description'
calcAUC: no visible global function definition for 'prediction'
calcAUC: no visible global function definition for 'performance'
calculateLimma: no visible global function definition for 'lmFit'
calculateLimma: no visible global function definition for
  'contrasts.fit'
calculateLimma: no visible global function definition for 'eBayes'
calculateTtest : <anonymous>: no visible global function definition for
  't.test'
clusterApplyLBDots : submit: no visible global function definition for
  'sendCall'
clusterApplyLBDots: no visible global function definition for
  'recvOneResult'
clusterNormE: no visible global function definition for 'var'
clusterNormVar: no visible global function definition for 'var'
compareLimmapumaDE: no visible global function definition for 'pdf'
compareLimmapumaDE: no visible global function definition for 'dev.off'
compareLimmapumaDE: no visible global function definition for 'par'
compareLimmapumaDE: no visible global function definition for
  'vennDiagram'
createDesignMatrix: no visible global function definition for
  'model.matrix'
erfc: no visible global function definition for 'pnorm'
gmhta: no visible global function definition for 'clusterEvalQ'
gmhta: no visible global function definition for 'data'
gmhta: no visible global function definition for 'clusterApplyLB'
gmhta: no visible global function definition for 'stopCluster'
gmhta: no visible binding for global variable 'median'
gmoExon: no visible global function definition for 'clusterEvalQ'
gmoExon: no visible global function definition for 'data'
gmoExon: no visible global function definition for 'clusterApplyLB'
gmoExon: no visible global function definition for 'stopCluster'
gmoExon: no visible binding for global variable 'median'
igmoExon: no visible global function definition for 'clusterEvalQ'
igmoExon: no visible global function definition for 'read.table'
igmoExon: no visible global function definition for 'data'
igmoExon: no visible global function definition for 'clusterApplyLB'
igmoExon: no visible global function definition for 'stopCluster'
igmoExon: no visible binding for global variable 'median'
just.mgmos: no visible binding for global variable 'median'
just.mmgmos: no visible binding for global variable 'median'
legend2: no visible global function definition for 'par'
legend2: no visible global function definition for 'xy.coords'
legend2 : rect2: no visible global function definition for 'rect'
legend2 : segments2: no visible global function definition for
  'segments'
legend2 : points2: no visible global function definition for 'points'
legend2 : text2: no visible global function definition for 'text'
legend2: no visible global function definition for 'strwidth'
legend2: no visible global function definition for 'xinch'
legend2: no visible global function definition for 'yinch'
legend2: no visible global function definition for 'strheight'
matrixDistance: no visible global function definition for 'dist'
mgmos: no visible binding for global variable 'median'
mmgmos: no visible binding for global variable 'median'
plot.pumaPCARes: no visible global function definition for 'text'
plot.pumaPCARes: no visible global function definition for 'legend'
plotErrorBars: no visible global function definition for 'qnorm'
plotErrorBars: no visible global function definition for 'par'
plotErrorBars: no visible global function definition for 'even'
plotErrorBars: no visible global function definition for 'odd'
plotErrorBars: no visible global function definition for 'arrows'
plotErrorBars: no visible global function definition for 'points'
plotErrorBars: no visible global function definition for 'axis'
plotErrorBars: no visible global function definition for 'title'
plotHistTwoClasses: no visible global function definition for 'axis'
plotHistTwoClasses: no visible global function definition for 'box'
plotROC: no visible global function definition for 'prediction'
plotROC: no visible global function definition for 'performance'
plotWhiskers: no visible global function definition for 'segments'
plotWhiskers: no visible global function definition for 'qnorm'
plotWhiskers: no visible global function definition for 'points'
plotWhiskers: no visible global function definition for 'abline'
pumaClust: no visible global function definition for 'read.csv'
pumaClust: no visible global function definition for 'kmeans'
pumaClust: no visible global function definition for 'cov'
pumaClustii: no visible global function definition for 'read.csv'
pumaClustii: no visible global function definition for 'cov'
pumaComb: no visible global function definition for 'getMPIcluster'
pumaComb: no visible global function definition for 'makeCluster'
pumaComb: no visible global function definition for 'clusterEvalQ'
pumaComb: no visible global function definition for 'clusterApplyLB'
pumaCombImproved: no visible global function definition for
  'getMPIcluster'
pumaCombImproved: no visible global function definition for
  'makeCluster'
pumaCombImproved: no visible global function definition for
  'clusterEvalQ'
pumaCombImproved: no visible global function definition for
  'clusterApplyLB'
pumaFull: no visible global function definition for 'pdf'
pumaFull: no visible global function definition for 'par'
pumaFull: no visible global function definition for 'prcomp'
pumaFull: no visible global function definition for 'dev.off'
pumaNormalize: no visible binding for global variable 'median'
pumaPCA: no visible global function definition for 'prcomp'
pumaPCA: no visible global function definition for 'rnorm'
pumaPCA: no visible global function definition for 'optimise'
pumaPCA: no visible global function definition for 'optim'
pumaPCA: no visible global function definition for 'par'
pumaPCARemoveRedundancy: no visible global function definition for
  'dist'
write.reslts,DEResult: no visible global function definition for
  'write.table'
write.reslts,ExpressionSet: no visible global function definition for
  'write.table'
write.reslts,exprReslt: no visible global function definition for
  'write.table'
write.reslts,pumaPCARes: no visible global function definition for
  'write.table'
Undefined global functions or variables:
  abline arrows axis box clusterApplyLB clusterEvalQ contrasts.fit cov
  data description dev.off dist eBayes even getMPIcluster kmeans legend
  lmFit makeCluster median model.matrix odd optim optimise par pdf
  performance pnorm points prcomp prediction qnorm read.csv read.table
  rect recvOneResult rnorm segments sendCall stopCluster strheight
  strwidth t.test text title var vennDiagram write.table xinch
  xy.coords yinch
Consider adding
  importFrom("grDevices", "dev.off", "pdf", "xy.coords")
  importFrom("graphics", "abline", "arrows", "axis", "box", "legend",
             "par", "points", "rect", "segments", "strheight",
             "strwidth", "text", "title", "xinch", "yinch")
  importFrom("stats", "cov", "dist", "kmeans", "median", "model.matrix",
             "optim", "optimise", "pnorm", "prcomp", "qnorm", "rnorm",
             "t.test", "var")
  importFrom("utils", "data", "read.csv", "read.table", "write.table")
to your NAMESPACE file.
* checking Rd files ... NOTE
checkRd: (-1) DEResult-class.Rd:92: Escaped LaTeX specials: \_
checkRd: (-1) DEResult-class.Rd:93: Escaped LaTeX specials: \_
checkRd: (-1) PMmmgmos.Rd:26: Escaped LaTeX specials: \_
checkRd: (-1) PMmmgmos.Rd:37: Escaped LaTeX specials: \_
checkRd: (-1) createContrastMatrix.Rd:20: Escaped LaTeX specials: \&
checkRd: (-1) exprReslt-class.Rd:100: Escaped LaTeX specials: \_
checkRd: (-1) exprReslt-class.Rd:101: Escaped LaTeX specials: \_ \_ \_
checkRd: (-1) exprReslt-class.Rd:102: Escaped LaTeX specials: \_ \_ \_
checkRd: (-1) gmhta.Rd:26: Escaped LaTeX specials: \_
checkRd: (-1) gmoExon.Rd:28: Escaped LaTeX specials: \_
checkRd: (-1) hcomb.Rd:22: Escaped LaTeX specials: \_
checkRd: (-1) hcomb.Rd:23: Escaped LaTeX specials: \_
checkRd: (-1) igmoExon.Rd:28: Escaped LaTeX specials: \_
checkRd: (-1) justmgMOS.Rd:41: Escaped LaTeX specials: \_ \_
checkRd: (-1) justmmgMOS.Rd:41: Escaped LaTeX specials: \_ \_
checkRd: (-1) legend2.Rd:134: Escaped LaTeX specials: \&
checkRd: (-1) mgmos.Rd:25: Escaped LaTeX specials: \_ \_
checkRd: (-1) mgmos.Rd:35: Escaped LaTeX specials: \_
checkRd: (-1) mmgmos.Rd:26: Escaped LaTeX specials: \_ \_
checkRd: (-1) mmgmos.Rd:37: Escaped LaTeX specials: \_
checkRd: (-1) mmgmos.Rd:38: Escaped LaTeX specials: \_
checkRd: (-1) pumaFull.Rd:23: Escaped LaTeX specials: \_ \_
checkRd: (-1) pumaFull.Rd:24: Escaped LaTeX specials: \_
checkRd: (-1) pumaFull.Rd:25: Escaped LaTeX specials: \_ \_ \_
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
File 'F:/biocbuild/bbs-3.18-bioc/R/library/puma/libs/x64/puma.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
puma-package     36.28   0.43   36.71
pumaDE           21.27   0.01   21.28
pumaComb         13.46   0.00   13.45
pumaCombImproved  8.07   0.00    8.08
pumaclust         6.26   0.00    6.26
plot-methods      5.48   0.39    5.87
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 5 NOTEs
See
  'F:/biocbuild/bbs-3.18-bioc/meat/puma.Rcheck/00check.log'
for details.



Installation output

puma.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD INSTALL puma
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.18-bioc/R/library'
* installing *source* package 'puma' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 12.3.0'
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG     -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c PMmultimgmos.c -o PMmultimgmos.o
In file included from PMmultimgmos.c:149:
o8comm.h: In function 'pmcalparameters':
o8comm.h:60:15: warning: unused variable 'xst' [-Wunused-variable]
   60 | X DDOUBLE    *xst;
      |               ^~~
o8comm.h:58:14: warning: unused variable 'nreset' [-Wunused-variable]
   58 | X IINTEGER   nreset;
      |              ^~~~~~
o8comm.h:56:23: warning: unused variable 'big' [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |                       ^~~
o8comm.h:56:20: warning: unused variable 'up' [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |                    ^~
o8comm.h:56:15: warning: unused variable 'low' [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |               ^~~
o8comm.h:54:19: warning: unused variable 'og' [-Wunused-variable]
   54 | X DDOUBLE    *ug,*og;
      |                   ^~
o8comm.h:54:15: warning: unused variable 'ug' [-Wunused-variable]
   54 | X DDOUBLE    *ug,*og;
      |               ^~
o8comm.h:52:20: warning: unused variable 'meu' [-Wunused-variable]
   52 | X FILE      *prou,*meu;
      |                    ^~~
o8comm.h:52:14: warning: unused variable 'prou' [-Wunused-variable]
   52 | X FILE      *prou,*meu;
      |              ^~~~
o8comm.h:50:33: warning: unused variable 'lastch' [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                                 ^~~~~~
o8comm.h:50:26: warning: unused variable 'lastup' [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                          ^~~~~~
o8comm.h:50:19: warning: unused variable 'lastdw' [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                   ^~~~~~
o8comm.h:50:14: warning: unused variable 'clow' [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |              ^~~~
o8comm.h:49:14: warning: unused variable 'level' [-Wunused-variable]
   49 | X DDOUBLE    level;
      |              ^~~~~
o8comm.h:47:21: warning: unused variable 'stmaxl' [-Wunused-variable]
   47 | X DDOUBLE    delta1,stmaxl;
      |                     ^~~~~~
o8comm.h:47:14: warning: unused variable 'delta1' [-Wunused-variable]
   47 | X DDOUBLE    delta1,stmaxl;
      |              ^~~~~~
o8comm.h:46:50: warning: unused variable 'stptrm' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                                  ^~~~~~
o8comm.h:46:44: warning: unused variable 'delta' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                            ^~~~~
o8comm.h:46:38: warning: unused variable 'sigla' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                      ^~~~~
o8comm.h:46:32: warning: unused variable 'sigsm' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                ^~~~~
o8comm.h:46:26: warning: unused variable 'theta' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                          ^~~~~
o8comm.h:46:20: warning: unused variable 'bbeta' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                    ^~~~~
o8comm.h:46:14: warning: unused variable 'alpha' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |              ^~~~~
o8comm.h:44:40: warning: unused variable 'taumax' [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                                        ^~~~~~
o8comm.h:44:33: warning: unused variable 'taufac' [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                                 ^~~~~~
o8comm.h:44:27: warning: unused variable 'tauqp' [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                           ^~~~~
o8comm.h:44:20: warning: unused variable 'updmy0' [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                    ^~~~~~
o8comm.h:44:13: warning: unused variable 'scfmax' [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |             ^~~~~~
o8comm.h:43:46: warning: unused variable 'c1d' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                              ^~~
o8comm.h:43:41: warning: unused variable 'epsx' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                         ^~~~
o8comm.h:43:37: warning: unused variable 'eta' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                     ^~~
o8comm.h:43:32: warning: unused variable 'rho1' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                ^~~~
o8comm.h:43:28: warning: unused variable 'rho' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                            ^~~
o8comm.h:43:21: warning: unused variable 'smallw' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                     ^~~~~~
o8comm.h:43:14: warning: unused variable 'smalld' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |              ^~~~~~
o8comm.h:42:45: warning: unused variable 'ny' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                             ^~
o8comm.h:42:41: warning: unused variable 'tau' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                         ^~~
o8comm.h:42:36: warning: unused variable 'tau0' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                    ^~~~
o8comm.h:42:29: warning: unused variable 'delmin' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                             ^~~~~~
o8comm.h:42:23: warning: unused variable 'del01' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                       ^~~~~
o8comm.h:42:18: warning: unused variable 'del0' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                  ^~~~
o8comm.h:42:14: warning: unused variable 'del' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |              ^~~
o8comm.h:41:14: warning: unused variable 'iterma' [-Wunused-variable]
   41 | X IINTEGER   iterma;
      |              ^~~~~~
o8comm.h:39:32: warning: unused variable 'work' [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                                ^~~~
o8comm.h:39:24: warning: unused variable 'infeas' [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                        ^~~~~~
o8comm.h:39:18: warning: unused variable 'slack' [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                  ^~~~~
o8comm.h:39:14: warning: unused variable 'yu' [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |              ^~
o8comm.h:38:24: warning: unused variable 'scf0' [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |                        ^~~~
o8comm.h:38:20: warning: unused variable 'scf' [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |                    ^~~
o8comm.h:38:14: warning: unused variable 'resst' [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |              ^~~~~
o8comm.h:37:20: warning: unused variable 'res1' [-Wunused-variable]
   37 |             *res0,*res1,
      |                    ^~~~
o8comm.h:37:14: warning: unused variable 'res0' [-Wunused-variable]
   37 |             *res0,*res1,
      |              ^~~~
o8comm.h:36:21: warning: unused variable 'res' [-Wunused-variable]
   36 |             *w,*w1,*res,
      |                     ^~~
o8comm.h:36:17: warning: unused variable 'w1' [-Wunused-variable]
   36 |             *w,*w1,*res,
      |                 ^~
o8comm.h:36:14: warning: unused variable 'w' [-Wunused-variable]
   36 |             *w,*w1,*res,
      |              ^
o8comm.h:35:18: warning: unused variable 'u0' [-Wunused-variable]
   35 | X DDOUBLE    *u,*u0,
      |                  ^~
o8comm.h:35:15: warning: unused variable 'u' [-Wunused-variable]
   35 | X DDOUBLE    *u,*u0,
      |               ^
o8comm.h:33:32: warning: unused variable 'clist' [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |                                ^~~~~
o8comm.h:33:24: warning: unused variable 'aalist' [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |                        ^~~~~~
o8comm.h:33:14: warning: unused variable 'o8bind0' [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |              ^~~~~~~
o8comm.h:32:30: warning: unused variable 'o8bind' [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |                              ^~~~~~
o8comm.h:32:23: warning: unused variable 'alist' [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |                       ^~~~~
o8comm.h:32:15: warning: unused variable 'violis' [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |               ^~~~~~
o8comm.h:30:38: warning: unused variable 'matsc' [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                                      ^~~~~
o8comm.h:30:32: warning: unused variable 'diag0' [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                                ^~~~~
o8comm.h:30:24: warning: unused variable 'scalm2' [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                        ^~~~~~
o8comm.h:30:18: warning: unused variable 'scalm' [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                  ^~~~~
o8comm.h:30:16: warning: unused variable 'a' [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                ^
o8comm.h:26:14: warning: unused variable 'colle' [-Wunused-variable]
   26 |             *colle;
      |              ^~~~~
o8comm.h:25:14: warning: unused variable 'cscal' [-Wunused-variable]
   25 |             *cscal,
      |              ^~~~~
o8comm.h:24:27: warning: unused variable 'diag' [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                           ^~~~
o8comm.h:24:20: warning: unused variable 'betaq' [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                    ^~~~~
o8comm.h:24:16: warning: unused variable 'qr' [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                ^~
o8comm.h:23:34: warning: unused variable 'rank' [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                                  ^~~~
o8comm.h:23:28: warning: unused variable 'colno' [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                            ^~~~~
o8comm.h:23:21: warning: unused variable 'perm1' [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                     ^~~~~
o8comm.h:23:15: warning: unused variable 'perm' [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |               ^~~~
o8comm.h:21:21: warning: unused variable 'gresn' [-Wunused-variable]
   21 |             **gres,*gresn;
      |                     ^~~~~
o8comm.h:21:15: warning: unused variable 'gres' [-Wunused-variable]
   21 |             **gres,*gresn;
      |               ^~~~
o8comm.h:20:38: warning: unused variable 'gphi1' [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                                      ^~~~~
o8comm.h:20:31: warning: unused variable 'gphi0' [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                               ^~~~~
o8comm.h:20:26: warning: unused variable 'qgf' [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                          ^~~
o8comm.h:20:21: warning: unused variable 'gfn' [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                     ^~~
o8comm.h:20:15: warning: unused variable 'gradf' [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |               ^~~~~
o8comm.h:18:24: warning: unused variable 'resmin' [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |                        ^~~~~~
o8comm.h:18:18: warning: unused variable 'difx' [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |                  ^~~~
o8comm.h:18:14: warning: unused variable 'dd' [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |              ^~
o8comm.h:17:42: warning: unused variable 'd0' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                          ^~
o8comm.h:17:39: warning: unused variable 'd' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                       ^
o8comm.h:17:33: warning: unused variable 'xmin' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                 ^~~~
o8comm.h:17:29: warning: unused variable 'x1' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                             ^~
o8comm.h:17:25: warning: unused variable 'x0' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                         ^~
o8comm.h:17:15: warning: unused variable 'donlp2_x' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |               ^~~~~~~~
o8comm.h:16:39: warning: unused variable 'upsim' [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                                       ^~~~~
o8comm.h:16:32: warning: unused variable 'cosphi' [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                                ^~~~~~
o8comm.h:16:25: warning: unused variable 'dirder' [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                         ^~~~~~
o8comm.h:16:18: warning: unused variable 'sigmin' [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                  ^~~~~~
o8comm.h:16:14: warning: unused variable 'sig' [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |              ^~~
o8comm.h:15:70: warning: unused variable 'd0norm' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                                      ^~~~~~
o8comm.h:15:63: warning: unused variable 'ddnorm' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                               ^~~~~~
o8comm.h:15:57: warning: unused variable 'dscal' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                         ^~~~~
o8comm.h:15:52: warning: unused variable 'sig0' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                    ^~~~
o8comm.h:15:45: warning: unused variable 'x0norm' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                             ^~~~~~
o8comm.h:15:39: warning: unused variable 'xnorm' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                       ^~~~~
o8comm.h:15:34: warning: unused variable 'b2n0' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                  ^~~~
o8comm.h:15:30: warning: unused variable 'b2n' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                              ^~~
o8comm.h:15:18: warning: unused variable 'donlp2_fmin' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                  ^~~~~~~~~~~
o8comm.h:15:13: warning: unused variable 'fxst' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |             ^~~~
o8comm.h:14:41: warning: unused variable 'fx1' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                                         ^~~
o8comm.h:14:37: warning: unused variable 'fx0' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                                     ^~~
o8comm.h:14:27: warning: unused variable 'phimin' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                           ^~~~~~
o8comm.h:14:22: warning: unused variable 'phi1' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                      ^~~~
o8comm.h:14:17: warning: unused variable 'phi0' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                 ^~~~
o8comm.h:14:13: warning: unused variable 'phi' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |             ^~~
o8comm.h:13:24: warning: unused variable 'psimin' [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |                        ^~~~~~
o8comm.h:13:18: warning: unused variable 'psist' [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |                  ^~~~~
o8comm.h:13:13: warning: unused variable 'psi1' [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |             ^~~~
o8comm.h:12:42: warning: unused variable 'psi0' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                                          ^~~~
o8comm.h:12:38: warning: unused variable 'psi' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                                      ^~~
o8comm.h:12:31: warning: unused variable 'upsist' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                               ^~~~~~
o8comm.h:12:25: warning: unused variable 'upsi1' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                         ^~~~~
o8comm.h:12:19: warning: unused variable 'upsi0' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                   ^~~~~
o8comm.h:12:14: warning: unused variable 'upsi' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |              ^~~~
o8comm.h:10:21: warning: unused variable 'phase' [-Wunused-variable]
   10 | X IINTEGER   itstep,phase;
      |                     ^~~~~
o8comm.h:10:14: warning: unused variable 'itstep' [-Wunused-variable]
   10 | X IINTEGER   itstep,phase;
      |              ^~~~~~
o8comm.h:9:16: warning: unused variable 'accinf' [-Wunused-variable]
    9 | X DDOUBLE    **accinf;
      |                ^~~~~~
o8comm.h:8:14: warning: unused variable 'optite' [-Wunused-variable]
    8 | X RREAL      optite;
      |              ^~~~~~
o8comm.h:7:14: warning: unused variable 'runtim' [-Wunused-variable]
    7 | X RREAL      runtim;
      |              ^~~~~~
In file included from o8comm.h:5:
o8fuco.h:33:13: warning: unused variable 'cfuerr' [-Wunused-variable]
   33 | X LLOGICAL *cfuerr;
      |             ^~~~~~
o8fuco.h:31:13: warning: unused variable 'gconst' [-Wunused-variable]
   31 | X LLOGICAL *gconst;
      |             ^~~~~~
o8fuco.h:29:14: warning: unused variable 'gunit' [-Wunused-variable]
   29 | X IINTEGER **gunit;
      |              ^~~~~
o8fuco.h:27:13: warning: unused variable 'nonlinlist' [-Wunused-variable]
   27 | X IINTEGER *nonlinlist;
      |             ^~~~~~~~~~
o8fuco.h:25:15: warning: unused variable 'ng' [-Wunused-variable]
   25 | X IINTEGER nh,ng;
      |               ^~
o8fuco.h:25:12: warning: unused variable 'nh' [-Wunused-variable]
   25 | X IINTEGER nh,ng;
      |            ^~
o8fuco.h:20:22: warning: unused variable 'confuerr' [-Wunused-variable]
   20 | X LLOGICAL   ffuerr,*confuerr;
      |                      ^~~~~~~~
o8fuco.h:20:14: warning: unused variable 'ffuerr' [-Wunused-variable]
   20 | X LLOGICAL   ffuerr,*confuerr;
      |              ^~~~~~
o8fuco.h:18:37: warning: unused variable 'cgres' [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                                     ^~~~~
o8fuco.h:18:31: warning: unused variable 'cres' [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                               ^~~~
o8fuco.h:18:23: warning: unused variable 'cfincr' [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                       ^~~~~~
o8fuco.h:18:18: warning: unused variable 'icgf' [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                  ^~~~
o8fuco.h:18:14: warning: unused variable 'icf' [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |              ^~~
o8fuco.h:16:40: warning: unused variable 'cold' [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                                        ^~~~
o8fuco.h:16:33: warning: unused variable 'analyt' [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                                 ^~~~~~
o8fuco.h:16:26: warning: unused variable 'silent' [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                          ^~~~~~
o8fuco.h:16:20: warning: unused variable 'eqres' [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                    ^~~~~
o8fuco.h:16:14: warning: unused variable 'ident' [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |              ^~~~~
o8fuco.h:15:37: warning: unused variable 'singul' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                                     ^~~~~~
o8fuco.h:15:33: warning: unused variable 'te3' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                                 ^~~
o8fuco.h:15:29: warning: unused variable 'te2' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                             ^~~
o8fuco.h:15:25: warning: unused variable 'te1' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                         ^~~
o8fuco.h:15:21: warning: unused variable 'te0' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                     ^~~
o8fuco.h:15:14: warning: unused variable 'intakt' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |              ^~~~~~
o8fuco.h:13:14: warning: unused variable 'epsdif' [-Wunused-variable]
   13 | X DDOUBLE    epsdif;
      |              ^~~~~~
o8fuco.h:11:13: warning: unused variable 'name' [-Wunused-variable]
   11 | X char      name[41];
      |             ^~~~
o8fuco.h:9:28: warning: unused variable 'deldif' [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |                            ^~~~~~
o8fuco.h:9:21: warning: unused variable 'tolmac' [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |                     ^~~~~~
o8fuco.h:9:14: warning: unused variable 'epsmac' [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |              ^~~~~~
o8fuco.h:7:52: warning: unused variable 'mdualm' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                                    ^~~~~~
o8fuco.h:7:44: warning: unused variable 'ndualm' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                            ^~~~~~
o8fuco.h:7:37: warning: unused variable 'nstep' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                     ^~~~~
o8fuco.h:7:29: warning: unused variable 'nonlin' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                             ^~~~~~
o8fuco.h:7:24: warning: unused variable 'nlin' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                        ^~~~
o8fuco.h:7:19: warning: unused variable 'nres' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                   ^~~~
o8fuco.h:7:16: warning: unused variable 'nr' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                ^~
o8fuco.h:7:14: warning: unused variable 'n' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |              ^
o8fuco.h:5:26: warning: unused variable 'lup' [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |                          ^~~
o8fuco.h:5:20: warning: unused variable 'llow' [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |                    ^~~~
o8fuco.h:5:15: warning: unused variable 'val' [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |               ^~~
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG     -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c cregistration.c -o cregistration.o
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG     -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c donlp2.c -o donlp2.o
donlp2.c: In function 'o8st':
donlp2.c:471:33: warning: variable 'infiny' set but not used [-Wunused-but-set-variable]
  471 |     static DDOUBLE   tol1,term, infiny;
      |                                 ^~~~~~
donlp2.c: At top level:
donlp2.c:2034:1: warning: "/*" within comment [-Wcomment]
 2034 | /* **************************************************************************** */
      |  
donlp2.c: In function 'o8opti':
donlp2.c:2707:1: warning: "/*" within comment [-Wcomment]
 2707 | /* inactive
      |  
donlp2.c:2079:44: warning: variable 'iumin' set but not used [-Wunused-but-set-variable]
 2079 |     static DDOUBLE   delsig,delx,sum,term, iumin;
      |                                            ^~~~~
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG     -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c gme.c -o gme.o
gme.c: In function 'gme_calparameters':
gme.c:266:16: warning: variable 'fstart' set but not used [-Wunused-but-set-variable]
  266 |         double fstart;
      |                ^~~~~~
In file included from gme.c:577:
o8comm.h: In function 'user_init_size_gme':
o8comm.h:60:15: warning: unused variable 'xst' [-Wunused-variable]
   60 | X DDOUBLE    *xst;
      |               ^~~
o8comm.h:58:14: warning: unused variable 'nreset' [-Wunused-variable]
   58 | X IINTEGER   nreset;
      |              ^~~~~~
o8comm.h:56:23: warning: unused variable 'big' [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |                       ^~~
o8comm.h:56:20: warning: unused variable 'up' [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |                    ^~
o8comm.h:56:15: warning: unused variable 'low' [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |               ^~~
o8comm.h:54:19: warning: unused variable 'og' [-Wunused-variable]
   54 | X DDOUBLE    *ug,*og;
      |                   ^~
o8comm.h:54:15: warning: unused variable 'ug' [-Wunused-variable]
   54 | X DDOUBLE    *ug,*og;
      |               ^~
o8comm.h:52:20: warning: unused variable 'meu' [-Wunused-variable]
   52 | X FILE      *prou,*meu;
      |                    ^~~
o8comm.h:52:14: warning: unused variable 'prou' [-Wunused-variable]
   52 | X FILE      *prou,*meu;
      |              ^~~~
o8comm.h:50:33: warning: unused variable 'lastch' [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                                 ^~~~~~
o8comm.h:50:26: warning: unused variable 'lastup' [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                          ^~~~~~
o8comm.h:50:19: warning: unused variable 'lastdw' [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                   ^~~~~~
o8comm.h:50:14: warning: unused variable 'clow' [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |              ^~~~
o8comm.h:49:14: warning: unused variable 'level' [-Wunused-variable]
   49 | X DDOUBLE    level;
      |              ^~~~~
o8comm.h:47:21: warning: unused variable 'stmaxl' [-Wunused-variable]
   47 | X DDOUBLE    delta1,stmaxl;
      |                     ^~~~~~
o8comm.h:47:14: warning: unused variable 'delta1' [-Wunused-variable]
   47 | X DDOUBLE    delta1,stmaxl;
      |              ^~~~~~
o8comm.h:46:50: warning: unused variable 'stptrm' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                                  ^~~~~~
o8comm.h:46:44: warning: unused variable 'delta' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                            ^~~~~
o8comm.h:46:38: warning: unused variable 'sigla' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                      ^~~~~
o8comm.h:46:32: warning: unused variable 'sigsm' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                ^~~~~
o8comm.h:46:26: warning: unused variable 'theta' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                          ^~~~~
o8comm.h:46:20: warning: unused variable 'bbeta' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                    ^~~~~
o8comm.h:46:14: warning: unused variable 'alpha' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |              ^~~~~
o8comm.h:44:40: warning: unused variable 'taumax' [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                                        ^~~~~~
o8comm.h:44:33: warning: unused variable 'taufac' [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                                 ^~~~~~
o8comm.h:44:27: warning: unused variable 'tauqp' [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                           ^~~~~
o8comm.h:44:20: warning: unused variable 'updmy0' [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                    ^~~~~~
o8comm.h:44:13: warning: unused variable 'scfmax' [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |             ^~~~~~
o8comm.h:43:46: warning: unused variable 'c1d' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                              ^~~
o8comm.h:43:41: warning: unused variable 'epsx' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                         ^~~~
o8comm.h:43:37: warning: unused variable 'eta' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                     ^~~
o8comm.h:43:32: warning: unused variable 'rho1' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                ^~~~
o8comm.h:43:28: warning: unused variable 'rho' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                            ^~~
o8comm.h:43:21: warning: unused variable 'smallw' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                     ^~~~~~
o8comm.h:43:14: warning: unused variable 'smalld' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |              ^~~~~~
o8comm.h:42:45: warning: unused variable 'ny' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                             ^~
o8comm.h:42:41: warning: unused variable 'tau' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                         ^~~
o8comm.h:42:36: warning: unused variable 'tau0' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                    ^~~~
o8comm.h:42:29: warning: unused variable 'delmin' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                             ^~~~~~
o8comm.h:42:23: warning: unused variable 'del01' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                       ^~~~~
o8comm.h:42:18: warning: unused variable 'del0' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                  ^~~~
o8comm.h:42:14: warning: unused variable 'del' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |              ^~~
o8comm.h:39:32: warning: unused variable 'work' [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                                ^~~~
o8comm.h:39:24: warning: unused variable 'infeas' [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                        ^~~~~~
o8comm.h:39:18: warning: unused variable 'slack' [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                  ^~~~~
o8comm.h:39:14: warning: unused variable 'yu' [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |              ^~
o8comm.h:38:24: warning: unused variable 'scf0' [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |                        ^~~~
o8comm.h:38:20: warning: unused variable 'scf' [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |                    ^~~
o8comm.h:38:14: warning: unused variable 'resst' [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |              ^~~~~
o8comm.h:37:20: warning: unused variable 'res1' [-Wunused-variable]
   37 |             *res0,*res1,
      |                    ^~~~
o8comm.h:37:14: warning: unused variable 'res0' [-Wunused-variable]
   37 |             *res0,*res1,
      |              ^~~~
o8comm.h:36:21: warning: unused variable 'res' [-Wunused-variable]
   36 |             *w,*w1,*res,
      |                     ^~~
o8comm.h:36:17: warning: unused variable 'w1' [-Wunused-variable]
   36 |             *w,*w1,*res,
      |                 ^~
o8comm.h:36:14: warning: unused variable 'w' [-Wunused-variable]
   36 |             *w,*w1,*res,
      |              ^
o8comm.h:35:18: warning: unused variable 'u0' [-Wunused-variable]
   35 | X DDOUBLE    *u,*u0,
      |                  ^~
o8comm.h:35:15: warning: unused variable 'u' [-Wunused-variable]
   35 | X DDOUBLE    *u,*u0,
      |               ^
o8comm.h:33:32: warning: unused variable 'clist' [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |                                ^~~~~
o8comm.h:33:24: warning: unused variable 'aalist' [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |                        ^~~~~~
o8comm.h:33:14: warning: unused variable 'o8bind0' [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |              ^~~~~~~
o8comm.h:32:30: warning: unused variable 'o8bind' [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |                              ^~~~~~
o8comm.h:32:23: warning: unused variable 'alist' [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |                       ^~~~~
o8comm.h:32:15: warning: unused variable 'violis' [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |               ^~~~~~
o8comm.h:30:38: warning: unused variable 'matsc' [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                                      ^~~~~
o8comm.h:30:32: warning: unused variable 'diag0' [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                                ^~~~~
o8comm.h:30:24: warning: unused variable 'scalm2' [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                        ^~~~~~
o8comm.h:30:18: warning: unused variable 'scalm' [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                  ^~~~~
o8comm.h:30:16: warning: unused variable 'a' [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                ^
o8comm.h:26:14: warning: unused variable 'colle' [-Wunused-variable]
   26 |             *colle;
      |              ^~~~~
o8comm.h:25:14: warning: unused variable 'cscal' [-Wunused-variable]
   25 |             *cscal,
      |              ^~~~~
o8comm.h:24:27: warning: unused variable 'diag' [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                           ^~~~
o8comm.h:24:20: warning: unused variable 'betaq' [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                    ^~~~~
o8comm.h:24:16: warning: unused variable 'qr' [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                ^~
o8comm.h:23:34: warning: unused variable 'rank' [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                                  ^~~~
o8comm.h:23:28: warning: unused variable 'colno' [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                            ^~~~~
o8comm.h:23:21: warning: unused variable 'perm1' [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                     ^~~~~
o8comm.h:23:15: warning: unused variable 'perm' [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |               ^~~~
o8comm.h:21:21: warning: unused variable 'gresn' [-Wunused-variable]
   21 |             **gres,*gresn;
      |                     ^~~~~
o8comm.h:21:15: warning: unused variable 'gres' [-Wunused-variable]
   21 |             **gres,*gresn;
      |               ^~~~
o8comm.h:20:38: warning: unused variable 'gphi1' [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                                      ^~~~~
o8comm.h:20:31: warning: unused variable 'gphi0' [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                               ^~~~~
o8comm.h:20:26: warning: unused variable 'qgf' [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                          ^~~
o8comm.h:20:21: warning: unused variable 'gfn' [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                     ^~~
o8comm.h:20:15: warning: unused variable 'gradf' [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |               ^~~~~
o8comm.h:18:24: warning: unused variable 'resmin' [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |                        ^~~~~~
o8comm.h:18:18: warning: unused variable 'difx' [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |                  ^~~~
o8comm.h:18:14: warning: unused variable 'dd' [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |              ^~
o8comm.h:17:42: warning: unused variable 'd0' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                          ^~
o8comm.h:17:39: warning: unused variable 'd' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                       ^
o8comm.h:17:33: warning: unused variable 'xmin' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                 ^~~~
o8comm.h:17:29: warning: unused variable 'x1' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                             ^~
o8comm.h:17:25: warning: unused variable 'x0' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                         ^~
o8comm.h:17:15: warning: unused variable 'donlp2_x' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |               ^~~~~~~~
o8comm.h:16:39: warning: unused variable 'upsim' [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                                       ^~~~~
o8comm.h:16:32: warning: unused variable 'cosphi' [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                                ^~~~~~
o8comm.h:16:25: warning: unused variable 'dirder' [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                         ^~~~~~
o8comm.h:16:18: warning: unused variable 'sigmin' [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                  ^~~~~~
o8comm.h:16:14: warning: unused variable 'sig' [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |              ^~~
o8comm.h:15:70: warning: unused variable 'd0norm' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                                      ^~~~~~
o8comm.h:15:63: warning: unused variable 'ddnorm' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                               ^~~~~~
o8comm.h:15:57: warning: unused variable 'dscal' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                         ^~~~~
o8comm.h:15:52: warning: unused variable 'sig0' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                    ^~~~
o8comm.h:15:45: warning: unused variable 'x0norm' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                             ^~~~~~
o8comm.h:15:39: warning: unused variable 'xnorm' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                       ^~~~~
o8comm.h:15:34: warning: unused variable 'b2n0' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                  ^~~~
o8comm.h:15:30: warning: unused variable 'b2n' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                              ^~~
o8comm.h:15:18: warning: unused variable 'donlp2_fmin' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                  ^~~~~~~~~~~
o8comm.h:15:13: warning: unused variable 'fxst' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |             ^~~~
o8comm.h:14:41: warning: unused variable 'fx1' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                                         ^~~
o8comm.h:14:37: warning: unused variable 'fx0' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                                     ^~~
o8comm.h:14:34: warning: unused variable 'fx' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                                  ^~
o8comm.h:14:27: warning: unused variable 'phimin' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                           ^~~~~~
o8comm.h:14:22: warning: unused variable 'phi1' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                      ^~~~
o8comm.h:14:17: warning: unused variable 'phi0' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                 ^~~~
o8comm.h:14:13: warning: unused variable 'phi' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |             ^~~
o8comm.h:13:24: warning: unused variable 'psimin' [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |                        ^~~~~~
o8comm.h:13:18: warning: unused variable 'psist' [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |                  ^~~~~
o8comm.h:13:13: warning: unused variable 'psi1' [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |             ^~~~
o8comm.h:12:42: warning: unused variable 'psi0' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                                          ^~~~
o8comm.h:12:38: warning: unused variable 'psi' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                                      ^~~
o8comm.h:12:31: warning: unused variable 'upsist' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                               ^~~~~~
o8comm.h:12:25: warning: unused variable 'upsi1' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                         ^~~~~
o8comm.h:12:19: warning: unused variable 'upsi0' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                   ^~~~~
o8comm.h:12:14: warning: unused variable 'upsi' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |              ^~~~
o8comm.h:10:21: warning: unused variable 'phase' [-Wunused-variable]
   10 | X IINTEGER   itstep,phase;
      |                     ^~~~~
o8comm.h:10:14: warning: unused variable 'itstep' [-Wunused-variable]
   10 | X IINTEGER   itstep,phase;
      |              ^~~~~~
o8comm.h:9:16: warning: unused variable 'accinf' [-Wunused-variable]
    9 | X DDOUBLE    **accinf;
      |                ^~~~~~
o8comm.h:8:14: warning: unused variable 'optite' [-Wunused-variable]
    8 | X RREAL      optite;
      |              ^~~~~~
o8comm.h:7:14: warning: unused variable 'runtim' [-Wunused-variable]
    7 | X RREAL      runtim;
      |              ^~~~~~
In file included from o8comm.h:5:
o8fuco.h:33:13: warning: unused variable 'cfuerr' [-Wunused-variable]
   33 | X LLOGICAL *cfuerr;
      |             ^~~~~~
o8fuco.h:31:13: warning: unused variable 'gconst' [-Wunused-variable]
   31 | X LLOGICAL *gconst;
      |             ^~~~~~
o8fuco.h:29:14: warning: unused variable 'gunit' [-Wunused-variable]
   29 | X IINTEGER **gunit;
      |              ^~~~~
o8fuco.h:27:13: warning: unused variable 'nonlinlist' [-Wunused-variable]
   27 | X IINTEGER *nonlinlist;
      |             ^~~~~~~~~~
o8fuco.h:25:15: warning: unused variable 'ng' [-Wunused-variable]
   25 | X IINTEGER nh,ng;
      |               ^~
o8fuco.h:25:12: warning: unused variable 'nh' [-Wunused-variable]
   25 | X IINTEGER nh,ng;
      |            ^~
o8fuco.h:20:22: warning: unused variable 'confuerr' [-Wunused-variable]
   20 | X LLOGICAL   ffuerr,*confuerr;
      |                      ^~~~~~~~
o8fuco.h:20:14: warning: unused variable 'ffuerr' [-Wunused-variable]
   20 | X LLOGICAL   ffuerr,*confuerr;
      |              ^~~~~~
o8fuco.h:18:37: warning: unused variable 'cgres' [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                                     ^~~~~
o8fuco.h:18:31: warning: unused variable 'cres' [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                               ^~~~
o8fuco.h:18:23: warning: unused variable 'cfincr' [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                       ^~~~~~
o8fuco.h:18:18: warning: unused variable 'icgf' [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                  ^~~~
o8fuco.h:18:14: warning: unused variable 'icf' [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |              ^~~
o8fuco.h:16:40: warning: unused variable 'cold' [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                                        ^~~~
o8fuco.h:16:33: warning: unused variable 'analyt' [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                                 ^~~~~~
o8fuco.h:16:26: warning: unused variable 'silent' [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                          ^~~~~~
o8fuco.h:16:20: warning: unused variable 'eqres' [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                    ^~~~~
o8fuco.h:16:14: warning: unused variable 'ident' [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |              ^~~~~
o8fuco.h:15:37: warning: unused variable 'singul' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                                     ^~~~~~
o8fuco.h:15:33: warning: unused variable 'te3' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                                 ^~~
o8fuco.h:15:29: warning: unused variable 'te2' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                             ^~~
o8fuco.h:15:25: warning: unused variable 'te1' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                         ^~~
o8fuco.h:15:21: warning: unused variable 'te0' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                     ^~~
o8fuco.h:15:14: warning: unused variable 'intakt' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |              ^~~~~~
o8fuco.h:13:14: warning: unused variable 'epsdif' [-Wunused-variable]
   13 | X DDOUBLE    epsdif;
      |              ^~~~~~
o8fuco.h:11:13: warning: unused variable 'name' [-Wunused-variable]
   11 | X char      name[41];
      |             ^~~~
o8fuco.h:9:28: warning: unused variable 'deldif' [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |                            ^~~~~~
o8fuco.h:9:21: warning: unused variable 'tolmac' [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |                     ^~~~~~
o8fuco.h:9:14: warning: unused variable 'epsmac' [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |              ^~~~~~
o8fuco.h:7:52: warning: unused variable 'mdualm' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                                    ^~~~~~
o8fuco.h:7:44: warning: unused variable 'ndualm' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                            ^~~~~~
o8fuco.h:7:19: warning: unused variable 'nres' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                   ^~~~
o8fuco.h:7:16: warning: unused variable 'nr' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                ^~
o8fuco.h:5:26: warning: unused variable 'lup' [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |                          ^~~
o8fuco.h:5:20: warning: unused variable 'llow' [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |                    ^~~~
o8fuco.h:5:15: warning: unused variable 'val' [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |               ^~~
In file included from gme.c:663:
o8cons.h: In function 'solchk_gme':
o8cons.h:11:5: warning: unused variable 'tp4' [-Wunused-variable]
   11 | tp3,tp4;
      |     ^~~
o8cons.h:11:1: warning: unused variable 'tp3' [-Wunused-variable]
   11 | tp3,tp4;
      | ^~~
o8cons.h:10:21: warning: unused variable 'tp2' [-Wunused-variable]
   10 | tm4,tm3,tm2,tm1,tp1,tp2,
      |                     ^~~
o8cons.h:10:17: warning: unused variable 'tp1' [-Wunused-variable]
   10 | tm4,tm3,tm2,tm1,tp1,tp2,
      |                 ^~~
o8cons.h:10:13: warning: unused variable 'tm1' [-Wunused-variable]
   10 | tm4,tm3,tm2,tm1,tp1,tp2,
      |             ^~~
o8cons.h:10:9: warning: unused variable 'tm2' [-Wunused-variable]
   10 | tm4,tm3,tm2,tm1,tp1,tp2,
      |         ^~~
o8cons.h:10:5: warning: unused variable 'tm3' [-Wunused-variable]
   10 | tm4,tm3,tm2,tm1,tp1,tp2,
      |     ^~~
o8cons.h:10:1: warning: unused variable 'tm4' [-Wunused-variable]
   10 | tm4,tm3,tm2,tm1,tp1,tp2,
      | ^~~
o8cons.h:9:22: warning: unused variable 'tm5' [-Wunused-variable]
    9 | tm10,tm9,tm8,tm7,tm6,tm5,
      |                      ^~~
o8cons.h:9:18: warning: unused variable 'tm6' [-Wunused-variable]
    9 | tm10,tm9,tm8,tm7,tm6,tm5,
      |                  ^~~
o8cons.h:9:14: warning: unused variable 'tm7' [-Wunused-variable]
    9 | tm10,tm9,tm8,tm7,tm6,tm5,
      |              ^~~
o8cons.h:9:10: warning: unused variable 'tm8' [-Wunused-variable]
    9 | tm10,tm9,tm8,tm7,tm6,tm5,
      |          ^~~
o8cons.h:9:6: warning: unused variable 'tm9' [-Wunused-variable]
    9 | tm10,tm9,tm8,tm7,tm6,tm5,
      |      ^~~
o8cons.h:9:1: warning: unused variable 'tm10' [-Wunused-variable]
    9 | tm10,tm9,tm8,tm7,tm6,tm5,
      | ^~~~
o8cons.h:8:5: warning: unused variable 'tm12' [-Wunused-variable]
    8 | c45,tm12,
      |     ^~~~
o8cons.h:8:1: warning: unused variable 'c45' [-Wunused-variable]
    8 | c45,tm12,
      | ^~~
o8cons.h:7:22: warning: unused variable 'p9' [-Wunused-variable]
    7 | onep5,p2,p4,p5,p7,p8,p9,
      |                      ^~
o8cons.h:7:19: warning: unused variable 'p8' [-Wunused-variable]
    7 | onep5,p2,p4,p5,p7,p8,p9,
      |                   ^~
o8cons.h:7:16: warning: unused variable 'p7' [-Wunused-variable]
    7 | onep5,p2,p4,p5,p7,p8,p9,
      |                ^~
o8cons.h:7:13: warning: unused variable 'p5' [-Wunused-variable]
    7 | onep5,p2,p4,p5,p7,p8,p9,
      |             ^~
o8cons.h:7:10: warning: unused variable 'p4' [-Wunused-variable]
    7 | onep5,p2,p4,p5,p7,p8,p9,
      |          ^~
o8cons.h:7:7: warning: unused variable 'p2' [-Wunused-variable]
    7 | onep5,p2,p4,p5,p7,p8,p9,
      |       ^~
o8cons.h:7:1: warning: unused variable 'onep5' [-Wunused-variable]
    7 | onep5,p2,p4,p5,p7,p8,p9,
      | ^~~~~
o8cons.h:6:20: warning: unused variable 'onep3' [-Wunused-variable]
    6 | twom2,twop4,twop11,onep3,
      |                    ^~~~~
o8cons.h:6:13: warning: unused variable 'twop11' [-Wunused-variable]
    6 | twom2,twop4,twop11,onep3,
      |             ^~~~~~
o8cons.h:6:7: warning: unused variable 'twop4' [-Wunused-variable]
    6 | twom2,twop4,twop11,onep3,
      |       ^~~~~
o8cons.h:6:1: warning: unused variable 'twom2' [-Wunused-variable]
    6 | twom2,twop4,twop11,onep3,
      | ^~~~~
o8cons.h:5:10: warning: unused variable 'seven' [-Wunused-variable]
    5 | five,six,seven,
      |          ^~~~~
o8cons.h:5:6: warning: unused variable 'six' [-Wunused-variable]
    5 | five,six,seven,
      |      ^~~
o8cons.h:5:1: warning: unused variable 'five' [-Wunused-variable]
    5 | five,six,seven,
      | ^~~~
o8cons.h:4:41: warning: unused variable 'four' [-Wunused-variable]
    4 | extern const DDOUBLE zero,one,two,three,four,
      |                                         ^~~~
o8cons.h:4:35: warning: unused variable 'three' [-Wunused-variable]
    4 | extern const DDOUBLE zero,one,two,three,four,
      |                                   ^~~~~
o8cons.h:4:31: warning: unused variable 'two' [-Wunused-variable]
    4 | extern const DDOUBLE zero,one,two,three,four,
      |                               ^~~
o8cons.h:4:27: warning: unused variable 'one' [-Wunused-variable]
    4 | extern const DDOUBLE zero,one,two,three,four,
      |                           ^~~
o8cons.h:4:22: warning: unused variable 'zero' [-Wunused-variable]
    4 | extern const DDOUBLE zero,one,two,three,four,
      |                      ^~~~
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG     -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ipplr_c.c -o ipplr_c.o
ipplr_c.c: In function 'workout0':
ipplr_c.c:255:132: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  255 |                    while((fmaxn_ipplr(diff_mu1,in_param.conds)>in_param.eps)||(fmaxn_ipplr(diff_lamda,in_param.conds)>in_param.eps)&& (n<2000))
      |                                                                               ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
In file included from ipplr_c.c:150:
o8comm.h:60:15: warning: unused variable 'xst' [-Wunused-variable]
   60 | X DDOUBLE    *xst;
      |               ^~~
o8comm.h:58:14: warning: unused variable 'nreset' [-Wunused-variable]
   58 | X IINTEGER   nreset;
      |              ^~~~~~
o8comm.h:56:23: warning: unused variable 'big' [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |                       ^~~
o8comm.h:56:20: warning: unused variable 'up' [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |                    ^~
o8comm.h:56:15: warning: unused variable 'low' [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |               ^~~
o8comm.h:54:19: warning: unused variable 'og' [-Wunused-variable]
   54 | X DDOUBLE    *ug,*og;
      |                   ^~
o8comm.h:54:15: warning: unused variable 'ug' [-Wunused-variable]
   54 | X DDOUBLE    *ug,*og;
      |               ^~
o8comm.h:52:20: warning: unused variable 'meu' [-Wunused-variable]
   52 | X FILE      *prou,*meu;
      |                    ^~~
o8comm.h:52:14: warning: unused variable 'prou' [-Wunused-variable]
   52 | X FILE      *prou,*meu;
      |              ^~~~
o8comm.h:50:33: warning: unused variable 'lastch' [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                                 ^~~~~~
o8comm.h:50:26: warning: unused variable 'lastup' [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                          ^~~~~~
o8comm.h:50:19: warning: unused variable 'lastdw' [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                   ^~~~~~
o8comm.h:50:14: warning: unused variable 'clow' [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |              ^~~~
o8comm.h:49:14: warning: unused variable 'level' [-Wunused-variable]
   49 | X DDOUBLE    level;
      |              ^~~~~
o8comm.h:47:21: warning: unused variable 'stmaxl' [-Wunused-variable]
   47 | X DDOUBLE    delta1,stmaxl;
      |                     ^~~~~~
o8comm.h:47:14: warning: unused variable 'delta1' [-Wunused-variable]
   47 | X DDOUBLE    delta1,stmaxl;
      |              ^~~~~~
o8comm.h:46:50: warning: unused variable 'stptrm' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                                  ^~~~~~
o8comm.h:46:44: warning: unused variable 'delta' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                            ^~~~~
o8comm.h:46:38: warning: unused variable 'sigla' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                      ^~~~~
o8comm.h:46:32: warning: unused variable 'sigsm' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                ^~~~~
o8comm.h:46:26: warning: unused variable 'theta' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                          ^~~~~
o8comm.h:46:20: warning: unused variable 'bbeta' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                    ^~~~~
o8comm.h:46:14: warning: unused variable 'alpha' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |              ^~~~~
o8comm.h:44:40: warning: unused variable 'taumax' [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                                        ^~~~~~
o8comm.h:44:33: warning: unused variable 'taufac' [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                                 ^~~~~~
o8comm.h:44:27: warning: unused variable 'tauqp' [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                           ^~~~~
o8comm.h:44:20: warning: unused variable 'updmy0' [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                    ^~~~~~
o8comm.h:44:13: warning: unused variable 'scfmax' [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |             ^~~~~~
o8comm.h:43:46: warning: unused variable 'c1d' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                              ^~~
o8comm.h:43:41: warning: unused variable 'epsx' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                         ^~~~
o8comm.h:43:37: warning: unused variable 'eta' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                     ^~~
o8comm.h:43:32: warning: unused variable 'rho1' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                ^~~~
o8comm.h:43:28: warning: unused variable 'rho' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                            ^~~
o8comm.h:43:21: warning: unused variable 'smallw' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                     ^~~~~~
o8comm.h:43:14: warning: unused variable 'smalld' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |              ^~~~~~
o8comm.h:42:45: warning: unused variable 'ny' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                             ^~
o8comm.h:42:41: warning: unused variable 'tau' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                         ^~~
o8comm.h:42:36: warning: unused variable 'tau0' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                    ^~~~
o8comm.h:42:29: warning: unused variable 'delmin' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                             ^~~~~~
o8comm.h:42:23: warning: unused variable 'del01' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                       ^~~~~
o8comm.h:42:18: warning: unused variable 'del0' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                  ^~~~
o8comm.h:42:14: warning: unused variable 'del' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |              ^~~
o8comm.h:41:14: warning: unused variable 'iterma' [-Wunused-variable]
   41 | X IINTEGER   iterma;
      |              ^~~~~~
o8comm.h:39:32: warning: unused variable 'work' [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                                ^~~~
o8comm.h:39:24: warning: unused variable 'infeas' [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                        ^~~~~~
o8comm.h:39:18: warning: unused variable 'slack' [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                  ^~~~~
o8comm.h:39:14: warning: unused variable 'yu' [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |              ^~
o8comm.h:38:24: warning: unused variable 'scf0' [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |                        ^~~~
o8comm.h:38:20: warning: unused variable 'scf' [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |                    ^~~
o8comm.h:38:14: warning: unused variable 'resst' [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |              ^~~~~
o8comm.h:37:20: warning: unused variable 'res1' [-Wunused-variable]
   37 |             *res0,*res1,
      |                    ^~~~
o8comm.h:37:14: warning: unused variable 'res0' [-Wunused-variable]
   37 |             *res0,*res1,
      |              ^~~~
o8comm.h:36:21: warning: unused variable 'res' [-Wunused-variable]
   36 |             *w,*w1,*res,
      |                     ^~~
o8comm.h:36:17: warning: unused variable 'w1' [-Wunused-variable]
   36 |             *w,*w1,*res,
      |                 ^~
o8comm.h:36:14: warning: unused variable 'w' [-Wunused-variable]
   36 |             *w,*w1,*res,
      |              ^
o8comm.h:35:18: warning: unused variable 'u0' [-Wunused-variable]
   35 | X DDOUBLE    *u,*u0,
      |                  ^~
o8comm.h:35:15: warning: unused variable 'u' [-Wunused-variable]
   35 | X DDOUBLE    *u,*u0,
      |               ^
o8comm.h:33:32: warning: unused variable 'clist' [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |                                ^~~~~
o8comm.h:33:24: warning: unused variable 'aalist' [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |                        ^~~~~~
o8comm.h:33:14: warning: unused variable 'o8bind0' [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |              ^~~~~~~
o8comm.h:32:30: warning: unused variable 'o8bind' [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |                              ^~~~~~
o8comm.h:32:23: warning: unused variable 'alist' [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |                       ^~~~~
o8comm.h:32:15: warning: unused variable 'violis' [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |               ^~~~~~
o8comm.h:30:38: warning: unused variable 'matsc' [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                                      ^~~~~
o8comm.h:30:32: warning: unused variable 'diag0' [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                                ^~~~~
o8comm.h:30:24: warning: unused variable 'scalm2' [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                        ^~~~~~
o8comm.h:30:18: warning: unused variable 'scalm' [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                  ^~~~~
o8comm.h:30:16: warning: unused variable 'a' [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                ^
o8comm.h:26:14: warning: unused variable 'colle' [-Wunused-variable]
   26 |             *colle;
      |              ^~~~~
o8comm.h:25:14: warning: unused variable 'cscal' [-Wunused-variable]
   25 |             *cscal,
      |              ^~~~~
o8comm.h:24:27: warning: unused variable 'diag' [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                           ^~~~
o8comm.h:24:20: warning: unused variable 'betaq' [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                    ^~~~~
o8comm.h:24:16: warning: unused variable 'qr' [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                ^~
o8comm.h:23:34: warning: unused variable 'rank' [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                                  ^~~~
o8comm.h:23:28: warning: unused variable 'colno' [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                            ^~~~~
o8comm.h:23:21: warning: unused variable 'perm1' [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                     ^~~~~
o8comm.h:23:15: warning: unused variable 'perm' [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |               ^~~~
o8comm.h:21:21: warning: unused variable 'gresn' [-Wunused-variable]
   21 |             **gres,*gresn;
      |                     ^~~~~
o8comm.h:21:15: warning: unused variable 'gres' [-Wunused-variable]
   21 |             **gres,*gresn;
      |               ^~~~
o8comm.h:20:38: warning: unused variable 'gphi1' [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                                      ^~~~~
o8comm.h:20:31: warning: unused variable 'gphi0' [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                               ^~~~~
o8comm.h:20:26: warning: unused variable 'qgf' [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                          ^~~
o8comm.h:20:21: warning: unused variable 'gfn' [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                     ^~~
o8comm.h:20:15: warning: unused variable 'gradf' [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |               ^~~~~
o8comm.h:18:24: warning: unused variable 'resmin' [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |                        ^~~~~~
o8comm.h:18:18: warning: unused variable 'difx' [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |                  ^~~~
o8comm.h:18:14: warning: unused variable 'dd' [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |              ^~
o8comm.h:17:42: warning: unused variable 'd0' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                          ^~
o8comm.h:17:39: warning: unused variable 'd' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                       ^
o8comm.h:17:33: warning: unused variable 'xmin' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                 ^~~~
o8comm.h:17:29: warning: unused variable 'x1' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                             ^~
o8comm.h:17:25: warning: unused variable 'x0' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                         ^~
o8comm.h:17:15: warning: unused variable 'donlp2_x' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |               ^~~~~~~~
o8comm.h:16:39: warning: unused variable 'upsim' [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                                       ^~~~~
o8comm.h:16:32: warning: unused variable 'cosphi' [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                                ^~~~~~
o8comm.h:16:25: warning: unused variable 'dirder' [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                         ^~~~~~
o8comm.h:16:18: warning: unused variable 'sigmin' [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                  ^~~~~~
o8comm.h:16:14: warning: unused variable 'sig' [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |              ^~~
o8comm.h:15:70: warning: unused variable 'd0norm' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                                      ^~~~~~
o8comm.h:15:63: warning: unused variable 'ddnorm' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                               ^~~~~~
o8comm.h:15:57: warning: unused variable 'dscal' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                         ^~~~~
o8comm.h:15:52: warning: unused variable 'sig0' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                    ^~~~
o8comm.h:15:45: warning: unused variable 'x0norm' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                             ^~~~~~
o8comm.h:15:39: warning: unused variable 'xnorm' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                       ^~~~~
o8comm.h:15:34: warning: unused variable 'b2n0' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                  ^~~~
o8comm.h:15:30: warning: unused variable 'b2n' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                              ^~~
o8comm.h:15:18: warning: unused variable 'donlp2_fmin' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                  ^~~~~~~~~~~
o8comm.h:15:13: warning: unused variable 'fxst' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |             ^~~~
o8comm.h:14:41: warning: unused variable 'fx1' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                                         ^~~
o8comm.h:14:37: warning: unused variable 'fx0' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                                     ^~~
o8comm.h:14:27: warning: unused variable 'phimin' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                           ^~~~~~
o8comm.h:14:22: warning: unused variable 'phi1' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                      ^~~~
o8comm.h:14:17: warning: unused variable 'phi0' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                 ^~~~
o8comm.h:14:13: warning: unused variable 'phi' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |             ^~~
o8comm.h:13:24: warning: unused variable 'psimin' [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |                        ^~~~~~
o8comm.h:13:18: warning: unused variable 'psist' [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |                  ^~~~~
o8comm.h:13:13: warning: unused variable 'psi1' [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |             ^~~~
o8comm.h:12:42: warning: unused variable 'psi0' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                                          ^~~~
o8comm.h:12:38: warning: unused variable 'psi' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                                      ^~~
o8comm.h:12:31: warning: unused variable 'upsist' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                               ^~~~~~
o8comm.h:12:25: warning: unused variable 'upsi1' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                         ^~~~~
o8comm.h:12:19: warning: unused variable 'upsi0' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                   ^~~~~
o8comm.h:12:14: warning: unused variable 'upsi' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |              ^~~~
o8comm.h:10:21: warning: unused variable 'phase' [-Wunused-variable]
   10 | X IINTEGER   itstep,phase;
      |                     ^~~~~
o8comm.h:10:14: warning: unused variable 'itstep' [-Wunused-variable]
   10 | X IINTEGER   itstep,phase;
      |              ^~~~~~
o8comm.h:9:16: warning: unused variable 'accinf' [-Wunused-variable]
    9 | X DDOUBLE    **accinf;
      |                ^~~~~~
o8comm.h:8:14: warning: unused variable 'optite' [-Wunused-variable]
    8 | X RREAL      optite;
      |              ^~~~~~
o8comm.h:7:14: warning: unused variable 'runtim' [-Wunused-variable]
    7 | X RREAL      runtim;
      |              ^~~~~~
In file included from o8comm.h:5:
o8fuco.h:33:13: warning: unused variable 'cfuerr' [-Wunused-variable]
   33 | X LLOGICAL *cfuerr;
      |             ^~~~~~
o8fuco.h:31:13: warning: unused variable 'gconst' [-Wunused-variable]
   31 | X LLOGICAL *gconst;
      |             ^~~~~~
o8fuco.h:29:14: warning: unused variable 'gunit' [-Wunused-variable]
   29 | X IINTEGER **gunit;
      |              ^~~~~
o8fuco.h:27:13: warning: unused variable 'nonlinlist' [-Wunused-variable]
   27 | X IINTEGER *nonlinlist;
      |             ^~~~~~~~~~
o8fuco.h:25:15: warning: unused variable 'ng' [-Wunused-variable]
   25 | X IINTEGER nh,ng;
      |               ^~
o8fuco.h:25:12: warning: unused variable 'nh' [-Wunused-variable]
   25 | X IINTEGER nh,ng;
      |            ^~
o8fuco.h:20:22: warning: unused variable 'confuerr' [-Wunused-variable]
   20 | X LLOGICAL   ffuerr,*confuerr;
      |                      ^~~~~~~~
o8fuco.h:20:14: warning: unused variable 'ffuerr' [-Wunused-variable]
   20 | X LLOGICAL   ffuerr,*confuerr;
      |              ^~~~~~
o8fuco.h:18:37: warning: unused variable 'cgres' [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                                     ^~~~~
o8fuco.h:18:31: warning: unused variable 'cres' [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                               ^~~~
o8fuco.h:18:23: warning: unused variable 'cfincr' [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                       ^~~~~~
o8fuco.h:18:18: warning: unused variable 'icgf' [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                  ^~~~
o8fuco.h:18:14: warning: unused variable 'icf' [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |              ^~~
o8fuco.h:16:40: warning: unused variable 'cold' [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                                        ^~~~
o8fuco.h:16:33: warning: unused variable 'analyt' [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                                 ^~~~~~
o8fuco.h:16:26: warning: unused variable 'silent' [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                          ^~~~~~
o8fuco.h:16:20: warning: unused variable 'eqres' [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                    ^~~~~
o8fuco.h:16:14: warning: unused variable 'ident' [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |              ^~~~~
o8fuco.h:15:37: warning: unused variable 'singul' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                                     ^~~~~~
o8fuco.h:15:33: warning: unused variable 'te3' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                                 ^~~
o8fuco.h:15:29: warning: unused variable 'te2' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                             ^~~
o8fuco.h:15:25: warning: unused variable 'te1' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                         ^~~
o8fuco.h:15:21: warning: unused variable 'te0' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                     ^~~
o8fuco.h:15:14: warning: unused variable 'intakt' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |              ^~~~~~
o8fuco.h:13:14: warning: unused variable 'epsdif' [-Wunused-variable]
   13 | X DDOUBLE    epsdif;
      |              ^~~~~~
o8fuco.h:11:13: warning: unused variable 'name' [-Wunused-variable]
   11 | X char      name[41];
      |             ^~~~
o8fuco.h:9:28: warning: unused variable 'deldif' [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |                            ^~~~~~
o8fuco.h:9:21: warning: unused variable 'tolmac' [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |                     ^~~~~~
o8fuco.h:9:14: warning: unused variable 'epsmac' [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |              ^~~~~~
o8fuco.h:7:52: warning: unused variable 'mdualm' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                                    ^~~~~~
o8fuco.h:7:44: warning: unused variable 'ndualm' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                            ^~~~~~
o8fuco.h:7:37: warning: unused variable 'nstep' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                     ^~~~~
o8fuco.h:7:29: warning: unused variable 'nonlin' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                             ^~~~~~
o8fuco.h:7:24: warning: unused variable 'nlin' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                        ^~~~
o8fuco.h:7:19: warning: unused variable 'nres' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                   ^~~~
o8fuco.h:7:16: warning: unused variable 'nr' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                ^~
o8fuco.h:7:14: warning: unused variable 'n' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |              ^
o8fuco.h:5:26: warning: unused variable 'lup' [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |                          ^~~
o8fuco.h:5:20: warning: unused variable 'llow' [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |                    ^~~~
o8fuco.h:5:15: warning: unused variable 'val' [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |               ^~~
ipplr_c.c:209:20: warning: 'tempx' may be used uninitialized [-Wmaybe-uninitialized]
  209 |                 if (tempx<=1.0e-3)
      |                    ^
ipplr_c.c:159:21: note: 'tempx' was declared here
  159 |         double temp,tempx,alpha1,beta1,fopt,foptold,Fx1,Fx2;
      |                     ^~~~~
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG     -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c multimgmos.c -o multimgmos.o
In file included from multimgmos.c:156:
o8comm.h: In function 'calparameters':
o8comm.h:60:15: warning: unused variable 'xst' [-Wunused-variable]
   60 | X DDOUBLE    *xst;
      |               ^~~
o8comm.h:58:14: warning: unused variable 'nreset' [-Wunused-variable]
   58 | X IINTEGER   nreset;
      |              ^~~~~~
o8comm.h:56:23: warning: unused variable 'big' [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |                       ^~~
o8comm.h:56:20: warning: unused variable 'up' [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |                    ^~
o8comm.h:56:15: warning: unused variable 'low' [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |               ^~~
o8comm.h:54:19: warning: unused variable 'og' [-Wunused-variable]
   54 | X DDOUBLE    *ug,*og;
      |                   ^~
o8comm.h:54:15: warning: unused variable 'ug' [-Wunused-variable]
   54 | X DDOUBLE    *ug,*og;
      |               ^~
o8comm.h:52:20: warning: unused variable 'meu' [-Wunused-variable]
   52 | X FILE      *prou,*meu;
      |                    ^~~
o8comm.h:52:14: warning: unused variable 'prou' [-Wunused-variable]
   52 | X FILE      *prou,*meu;
      |              ^~~~
o8comm.h:50:33: warning: unused variable 'lastch' [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                                 ^~~~~~
o8comm.h:50:26: warning: unused variable 'lastup' [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                          ^~~~~~
o8comm.h:50:19: warning: unused variable 'lastdw' [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                   ^~~~~~
o8comm.h:50:14: warning: unused variable 'clow' [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |              ^~~~
o8comm.h:49:14: warning: unused variable 'level' [-Wunused-variable]
   49 | X DDOUBLE    level;
      |              ^~~~~
o8comm.h:47:21: warning: unused variable 'stmaxl' [-Wunused-variable]
   47 | X DDOUBLE    delta1,stmaxl;
      |                     ^~~~~~
o8comm.h:47:14: warning: unused variable 'delta1' [-Wunused-variable]
   47 | X DDOUBLE    delta1,stmaxl;
      |              ^~~~~~
o8comm.h:46:50: warning: unused variable 'stptrm' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                                  ^~~~~~
o8comm.h:46:44: warning: unused variable 'delta' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                            ^~~~~
o8comm.h:46:38: warning: unused variable 'sigla' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                      ^~~~~
o8comm.h:46:32: warning: unused variable 'sigsm' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                ^~~~~
o8comm.h:46:26: warning: unused variable 'theta' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                          ^~~~~
o8comm.h:46:20: warning: unused variable 'bbeta' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                    ^~~~~
o8comm.h:46:14: warning: unused variable 'alpha' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |              ^~~~~
o8comm.h:44:40: warning: unused variable 'taumax' [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                                        ^~~~~~
o8comm.h:44:33: warning: unused variable 'taufac' [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                                 ^~~~~~
o8comm.h:44:27: warning: unused variable 'tauqp' [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                           ^~~~~
o8comm.h:44:20: warning: unused variable 'updmy0' [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                    ^~~~~~
o8comm.h:44:13: warning: unused variable 'scfmax' [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |             ^~~~~~
o8comm.h:43:46: warning: unused variable 'c1d' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                              ^~~
o8comm.h:43:41: warning: unused variable 'epsx' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                         ^~~~
o8comm.h:43:37: warning: unused variable 'eta' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                     ^~~
o8comm.h:43:32: warning: unused variable 'rho1' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                ^~~~
o8comm.h:43:28: warning: unused variable 'rho' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                            ^~~
o8comm.h:43:21: warning: unused variable 'smallw' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                     ^~~~~~
o8comm.h:43:14: warning: unused variable 'smalld' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |              ^~~~~~
o8comm.h:42:45: warning: unused variable 'ny' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                             ^~
o8comm.h:42:41: warning: unused variable 'tau' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                         ^~~
o8comm.h:42:36: warning: unused variable 'tau0' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                    ^~~~
o8comm.h:42:29: warning: unused variable 'delmin' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                             ^~~~~~
o8comm.h:42:23: warning: unused variable 'del01' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                       ^~~~~
o8comm.h:42:18: warning: unused variable 'del0' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                  ^~~~
o8comm.h:42:14: warning: unused variable 'del' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |              ^~~
o8comm.h:41:14: warning: unused variable 'iterma' [-Wunused-variable]
   41 | X IINTEGER   iterma;
      |              ^~~~~~
o8comm.h:39:32: warning: unused variable 'work' [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                                ^~~~
o8comm.h:39:24: warning: unused variable 'infeas' [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                        ^~~~~~
o8comm.h:39:18: warning: unused variable 'slack' [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                  ^~~~~
o8comm.h:39:14: warning: unused variable 'yu' [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |              ^~
o8comm.h:38:24: warning: unused variable 'scf0' [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |                        ^~~~
o8comm.h:38:20: warning: unused variable 'scf' [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |                    ^~~
o8comm.h:38:14: warning: unused variable 'resst' [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |              ^~~~~
o8comm.h:37:20: warning: unused variable 'res1' [-Wunused-variable]
   37 |             *res0,*res1,
      |                    ^~~~
o8comm.h:37:14: warning: unused variable 'res0' [-Wunused-variable]
   37 |             *res0,*res1,
      |              ^~~~
o8comm.h:36:21: warning: unused variable 'res' [-Wunused-variable]
   36 |             *w,*w1,*res,
      |                     ^~~
o8comm.h:36:17: warning: unused variable 'w1' [-Wunused-variable]
   36 |             *w,*w1,*res,
      |                 ^~
o8comm.h:36:14: warning: unused variable 'w' [-Wunused-variable]
   36 |             *w,*w1,*res,
      |              ^
o8comm.h:35:18: warning: unused variable 'u0' [-Wunused-variable]
   35 | X DDOUBLE    *u,*u0,
      |                  ^~
o8comm.h:35:15: warning: unused variable 'u' [-Wunused-variable]
   35 | X DDOUBLE    *u,*u0,
      |               ^
o8comm.h:33:32: warning: unused variable 'clist' [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |                                ^~~~~
o8comm.h:33:24: warning: unused variable 'aalist' [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |                        ^~~~~~
o8comm.h:33:14: warning: unused variable 'o8bind0' [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |              ^~~~~~~
o8comm.h:32:30: warning: unused variable 'o8bind' [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |                              ^~~~~~
o8comm.h:32:23: warning: unused variable 'alist' [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |                       ^~~~~
o8comm.h:32:15: warning: unused variable 'violis' [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |               ^~~~~~
o8comm.h:30:38: warning: unused variable 'matsc' [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                                      ^~~~~
o8comm.h:30:32: warning: unused variable 'diag0' [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                                ^~~~~
o8comm.h:30:24: warning: unused variable 'scalm2' [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                        ^~~~~~
o8comm.h:30:18: warning: unused variable 'scalm' [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                  ^~~~~
o8comm.h:30:16: warning: unused variable 'a' [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                ^
o8comm.h:26:14: warning: unused variable 'colle' [-Wunused-variable]
   26 |             *colle;
      |              ^~~~~
o8comm.h:25:14: warning: unused variable 'cscal' [-Wunused-variable]
   25 |             *cscal,
      |              ^~~~~
o8comm.h:24:27: warning: unused variable 'diag' [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                           ^~~~
o8comm.h:24:20: warning: unused variable 'betaq' [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                    ^~~~~
o8comm.h:24:16: warning: unused variable 'qr' [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                ^~
o8comm.h:23:34: warning: unused variable 'rank' [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                                  ^~~~
o8comm.h:23:28: warning: unused variable 'colno' [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                            ^~~~~
o8comm.h:23:21: warning: unused variable 'perm1' [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                     ^~~~~
o8comm.h:23:15: warning: unused variable 'perm' [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |               ^~~~
o8comm.h:21:21: warning: unused variable 'gresn' [-Wunused-variable]
   21 |             **gres,*gresn;
      |                     ^~~~~
o8comm.h:21:15: warning: unused variable 'gres' [-Wunused-variable]
   21 |             **gres,*gresn;
      |               ^~~~
o8comm.h:20:38: warning: unused variable 'gphi1' [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                                      ^~~~~
o8comm.h:20:31: warning: unused variable 'gphi0' [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                               ^~~~~
o8comm.h:20:26: warning: unused variable 'qgf' [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                          ^~~
o8comm.h:20:21: warning: unused variable 'gfn' [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                     ^~~
o8comm.h:20:15: warning: unused variable 'gradf' [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |               ^~~~~
o8comm.h:18:24: warning: unused variable 'resmin' [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |                        ^~~~~~
o8comm.h:18:18: warning: unused variable 'difx' [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |                  ^~~~
o8comm.h:18:14: warning: unused variable 'dd' [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |              ^~
o8comm.h:17:42: warning: unused variable 'd0' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                          ^~
o8comm.h:17:39: warning: unused variable 'd' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                       ^
o8comm.h:17:33: warning: unused variable 'xmin' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                 ^~~~
o8comm.h:17:29: warning: unused variable 'x1' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                             ^~
o8comm.h:17:25: warning: unused variable 'x0' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                         ^~
o8comm.h:17:15: warning: unused variable 'donlp2_x' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |               ^~~~~~~~
o8comm.h:16:39: warning: unused variable 'upsim' [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                                       ^~~~~
o8comm.h:16:32: warning: unused variable 'cosphi' [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                                ^~~~~~
o8comm.h:16:25: warning: unused variable 'dirder' [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                         ^~~~~~
o8comm.h:16:18: warning: unused variable 'sigmin' [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                  ^~~~~~
o8comm.h:16:14: warning: unused variable 'sig' [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |              ^~~
o8comm.h:15:70: warning: unused variable 'd0norm' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                                      ^~~~~~
o8comm.h:15:63: warning: unused variable 'ddnorm' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                               ^~~~~~
o8comm.h:15:57: warning: unused variable 'dscal' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                         ^~~~~
o8comm.h:15:52: warning: unused variable 'sig0' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                    ^~~~
o8comm.h:15:45: warning: unused variable 'x0norm' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                             ^~~~~~
o8comm.h:15:39: warning: unused variable 'xnorm' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                       ^~~~~
o8comm.h:15:34: warning: unused variable 'b2n0' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                  ^~~~
o8comm.h:15:30: warning: unused variable 'b2n' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                              ^~~
o8comm.h:15:18: warning: unused variable 'donlp2_fmin' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                  ^~~~~~~~~~~
o8comm.h:15:13: warning: unused variable 'fxst' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |             ^~~~
o8comm.h:14:41: warning: unused variable 'fx1' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                                         ^~~
o8comm.h:14:37: warning: unused variable 'fx0' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                                     ^~~
o8comm.h:14:27: warning: unused variable 'phimin' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                           ^~~~~~
o8comm.h:14:22: warning: unused variable 'phi1' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                      ^~~~
o8comm.h:14:17: warning: unused variable 'phi0' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                 ^~~~
o8comm.h:14:13: warning: unused variable 'phi' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |             ^~~
o8comm.h:13:24: warning: unused variable 'psimin' [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |                        ^~~~~~
o8comm.h:13:18: warning: unused variable 'psist' [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |                  ^~~~~
o8comm.h:13:13: warning: unused variable 'psi1' [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |             ^~~~
o8comm.h:12:42: warning: unused variable 'psi0' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                                          ^~~~
o8comm.h:12:38: warning: unused variable 'psi' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                                      ^~~
o8comm.h:12:31: warning: unused variable 'upsist' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                               ^~~~~~
o8comm.h:12:25: warning: unused variable 'upsi1' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                         ^~~~~
o8comm.h:12:19: warning: unused variable 'upsi0' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                   ^~~~~
o8comm.h:12:14: warning: unused variable 'upsi' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |              ^~~~
o8comm.h:10:21: warning: unused variable 'phase' [-Wunused-variable]
   10 | X IINTEGER   itstep,phase;
      |                     ^~~~~
o8comm.h:10:14: warning: unused variable 'itstep' [-Wunused-variable]
   10 | X IINTEGER   itstep,phase;
      |              ^~~~~~
o8comm.h:9:16: warning: unused variable 'accinf' [-Wunused-variable]
    9 | X DDOUBLE    **accinf;
      |                ^~~~~~
o8comm.h:8:14: warning: unused variable 'optite' [-Wunused-variable]
    8 | X RREAL      optite;
      |              ^~~~~~
o8comm.h:7:14: warning: unused variable 'runtim' [-Wunused-variable]
    7 | X RREAL      runtim;
      |              ^~~~~~
In file included from o8comm.h:5:
o8fuco.h:33:13: warning: unused variable 'cfuerr' [-Wunused-variable]
   33 | X LLOGICAL *cfuerr;
      |             ^~~~~~
o8fuco.h:31:13: warning: unused variable 'gconst' [-Wunused-variable]
   31 | X LLOGICAL *gconst;
      |             ^~~~~~
o8fuco.h:29:14: warning: unused variable 'gunit' [-Wunused-variable]
   29 | X IINTEGER **gunit;
      |              ^~~~~
o8fuco.h:27:13: warning: unused variable 'nonlinlist' [-Wunused-variable]
   27 | X IINTEGER *nonlinlist;
      |             ^~~~~~~~~~
o8fuco.h:25:15: warning: unused variable 'ng' [-Wunused-variable]
   25 | X IINTEGER nh,ng;
      |               ^~
o8fuco.h:25:12: warning: unused variable 'nh' [-Wunused-variable]
   25 | X IINTEGER nh,ng;
      |            ^~
o8fuco.h:20:22: warning: unused variable 'confuerr' [-Wunused-variable]
   20 | X LLOGICAL   ffuerr,*confuerr;
      |                      ^~~~~~~~
o8fuco.h:20:14: warning: unused variable 'ffuerr' [-Wunused-variable]
   20 | X LLOGICAL   ffuerr,*confuerr;
      |              ^~~~~~
o8fuco.h:18:37: warning: unused variable 'cgres' [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                                     ^~~~~
o8fuco.h:18:31: warning: unused variable 'cres' [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                               ^~~~
o8fuco.h:18:23: warning: unused variable 'cfincr' [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                       ^~~~~~
o8fuco.h:18:18: warning: unused variable 'icgf' [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                  ^~~~
o8fuco.h:18:14: warning: unused variable 'icf' [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |              ^~~
o8fuco.h:16:40: warning: unused variable 'cold' [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                                        ^~~~
o8fuco.h:16:33: warning: unused variable 'analyt' [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                                 ^~~~~~
o8fuco.h:16:26: warning: unused variable 'silent' [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                          ^~~~~~
o8fuco.h:16:20: warning: unused variable 'eqres' [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                    ^~~~~
o8fuco.h:16:14: warning: unused variable 'ident' [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |              ^~~~~
o8fuco.h:15:37: warning: unused variable 'singul' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                                     ^~~~~~
o8fuco.h:15:33: warning: unused variable 'te3' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                                 ^~~
o8fuco.h:15:29: warning: unused variable 'te2' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                             ^~~
o8fuco.h:15:25: warning: unused variable 'te1' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                         ^~~
o8fuco.h:15:21: warning: unused variable 'te0' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                     ^~~
o8fuco.h:15:14: warning: unused variable 'intakt' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |              ^~~~~~
o8fuco.h:13:14: warning: unused variable 'epsdif' [-Wunused-variable]
   13 | X DDOUBLE    epsdif;
      |              ^~~~~~
o8fuco.h:11:13: warning: unused variable 'name' [-Wunused-variable]
   11 | X char      name[41];
      |             ^~~~
o8fuco.h:9:28: warning: unused variable 'deldif' [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |                            ^~~~~~
o8fuco.h:9:21: warning: unused variable 'tolmac' [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |                     ^~~~~~
o8fuco.h:9:14: warning: unused variable 'epsmac' [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |              ^~~~~~
o8fuco.h:7:52: warning: unused variable 'mdualm' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                                    ^~~~~~
o8fuco.h:7:44: warning: unused variable 'ndualm' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                            ^~~~~~
o8fuco.h:7:37: warning: unused variable 'nstep' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                     ^~~~~
o8fuco.h:7:29: warning: unused variable 'nonlin' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                             ^~~~~~
o8fuco.h:7:24: warning: unused variable 'nlin' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                        ^~~~
o8fuco.h:7:19: warning: unused variable 'nres' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                   ^~~~
o8fuco.h:7:16: warning: unused variable 'nr' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                ^~
o8fuco.h:7:14: warning: unused variable 'n' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |              ^
o8fuco.h:5:26: warning: unused variable 'lup' [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |                          ^~~
o8fuco.h:5:20: warning: unused variable 'llow' [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |                    ^~~~
o8fuco.h:5:15: warning: unused variable 'val' [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |               ^~~
multimgmos.c: In function 'ef_mmgmos':
multimgmos.c:771:16: warning: variable 'alphaii' set but not used [-Wunused-but-set-variable]
  771 |         double alphaii[MAX_NUM_COND]={0.0}, c, d_mmgmos, t1, t2;
      |                ^~~~~~~
multimgmos.c: In function 'egradf_mmgmos':
multimgmos.c:893:101: warning: missing braces around initializer [-Wmissing-braces]
  893 |         double alphaii[MAX_NUM_COND]={0.0}, s1[MAX_NUM_COND]={0.0}, s2[MAX_NUM_PROBE][MAX_NUM_COND]={0.0}, c, d_mmgmos, t1, s3, s4;
      |                                                                                                     ^
      |                                                                                                      {  }
multimgmos.c:893:16: warning: variable 'alphaii' set but not used [-Wunused-but-set-variable]
  893 |         double alphaii[MAX_NUM_COND]={0.0}, s1[MAX_NUM_COND]={0.0}, s2[MAX_NUM_PROBE][MAX_NUM_COND]={0.0}, c, d_mmgmos, t1, s3, s4;
      |                ^~~~~~~
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG     -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c newx.c -o newx.o
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG     -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c pplr_c.c -o pplr_c.o
pplr_c.c: In function 'workout_comb1':
pplr_c.c:185:68: warning: unused variable 'x_temp' [-Wunused-variable]
  185 |         double exp_c[MAX_NUM_REPLICATE], var_c[MAX_NUM_REPLICATE], x_temp[MAX_NUM_COND];
      |                                                                    ^~~~~~
In file included from pplr_c.c:181:
o8comm.h:60:15: warning: unused variable 'xst' [-Wunused-variable]
   60 | X DDOUBLE    *xst;
      |               ^~~
o8comm.h:58:14: warning: unused variable 'nreset' [-Wunused-variable]
   58 | X IINTEGER   nreset;
      |              ^~~~~~
o8comm.h:56:23: warning: unused variable 'big' [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |                       ^~~
o8comm.h:56:20: warning: unused variable 'up' [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |                    ^~
o8comm.h:56:15: warning: unused variable 'low' [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |               ^~~
o8comm.h:54:19: warning: unused variable 'og' [-Wunused-variable]
   54 | X DDOUBLE    *ug,*og;
      |                   ^~
o8comm.h:54:15: warning: unused variable 'ug' [-Wunused-variable]
   54 | X DDOUBLE    *ug,*og;
      |               ^~
o8comm.h:52:20: warning: unused variable 'meu' [-Wunused-variable]
   52 | X FILE      *prou,*meu;
      |                    ^~~
o8comm.h:52:14: warning: unused variable 'prou' [-Wunused-variable]
   52 | X FILE      *prou,*meu;
      |              ^~~~
o8comm.h:50:33: warning: unused variable 'lastch' [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                                 ^~~~~~
o8comm.h:50:26: warning: unused variable 'lastup' [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                          ^~~~~~
o8comm.h:50:19: warning: unused variable 'lastdw' [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                   ^~~~~~
o8comm.h:50:14: warning: unused variable 'clow' [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |              ^~~~
o8comm.h:49:14: warning: unused variable 'level' [-Wunused-variable]
   49 | X DDOUBLE    level;
      |              ^~~~~
o8comm.h:47:21: warning: unused variable 'stmaxl' [-Wunused-variable]
   47 | X DDOUBLE    delta1,stmaxl;
      |                     ^~~~~~
o8comm.h:47:14: warning: unused variable 'delta1' [-Wunused-variable]
   47 | X DDOUBLE    delta1,stmaxl;
      |              ^~~~~~
o8comm.h:46:50: warning: unused variable 'stptrm' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                                  ^~~~~~
o8comm.h:46:44: warning: unused variable 'delta' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                            ^~~~~
o8comm.h:46:38: warning: unused variable 'sigla' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                      ^~~~~
o8comm.h:46:32: warning: unused variable 'sigsm' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                ^~~~~
o8comm.h:46:26: warning: unused variable 'theta' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                          ^~~~~
o8comm.h:46:20: warning: unused variable 'bbeta' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                    ^~~~~
o8comm.h:46:14: warning: unused variable 'alpha' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |              ^~~~~
o8comm.h:44:40: warning: unused variable 'taumax' [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                                        ^~~~~~
o8comm.h:44:33: warning: unused variable 'taufac' [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                                 ^~~~~~
o8comm.h:44:27: warning: unused variable 'tauqp' [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                           ^~~~~
o8comm.h:44:20: warning: unused variable 'updmy0' [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                    ^~~~~~
o8comm.h:44:13: warning: unused variable 'scfmax' [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |             ^~~~~~
o8comm.h:43:46: warning: unused variable 'c1d' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                              ^~~
o8comm.h:43:41: warning: unused variable 'epsx' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                         ^~~~
o8comm.h:43:37: warning: unused variable 'eta' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                     ^~~
o8comm.h:43:32: warning: unused variable 'rho1' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                ^~~~
o8comm.h:43:28: warning: unused variable 'rho' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                            ^~~
o8comm.h:43:21: warning: unused variable 'smallw' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                     ^~~~~~
o8comm.h:43:14: warning: unused variable 'smalld' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |              ^~~~~~
o8comm.h:42:45: warning: unused variable 'ny' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                             ^~
o8comm.h:42:41: warning: unused variable 'tau' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                         ^~~
o8comm.h:42:36: warning: unused variable 'tau0' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                    ^~~~
o8comm.h:42:29: warning: unused variable 'delmin' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                             ^~~~~~
o8comm.h:42:23: warning: unused variable 'del01' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                       ^~~~~
o8comm.h:42:18: warning: unused variable 'del0' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                  ^~~~
o8comm.h:42:14: warning: unused variable 'del' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |              ^~~
o8comm.h:41:14: warning: unused variable 'iterma' [-Wunused-variable]
   41 | X IINTEGER   iterma;
      |              ^~~~~~
o8comm.h:39:32: warning: unused variable 'work' [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                                ^~~~
o8comm.h:39:24: warning: unused variable 'infeas' [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                        ^~~~~~
o8comm.h:39:18: warning: unused variable 'slack' [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                  ^~~~~
o8comm.h:39:14: warning: unused variable 'yu' [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |              ^~
o8comm.h:38:24: warning: unused variable 'scf0' [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |                        ^~~~
o8comm.h:38:20: warning: unused variable 'scf' [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |                    ^~~
o8comm.h:38:14: warning: unused variable 'resst' [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |              ^~~~~
o8comm.h:37:20: warning: unused variable 'res1' [-Wunused-variable]
   37 |             *res0,*res1,
      |                    ^~~~
o8comm.h:37:14: warning: unused variable 'res0' [-Wunused-variable]
   37 |             *res0,*res1,
      |              ^~~~
o8comm.h:36:21: warning: unused variable 'res' [-Wunused-variable]
   36 |             *w,*w1,*res,
      |                     ^~~
o8comm.h:36:17: warning: unused variable 'w1' [-Wunused-variable]
   36 |             *w,*w1,*res,
      |                 ^~
o8comm.h:36:14: warning: unused variable 'w' [-Wunused-variable]
   36 |             *w,*w1,*res,
      |              ^
o8comm.h:35:18: warning: unused variable 'u0' [-Wunused-variable]
   35 | X DDOUBLE    *u,*u0,
      |                  ^~
o8comm.h:35:15: warning: unused variable 'u' [-Wunused-variable]
   35 | X DDOUBLE    *u,*u0,
      |               ^
o8comm.h:33:32: warning: unused variable 'clist' [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |                                ^~~~~
o8comm.h:33:24: warning: unused variable 'aalist' [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |                        ^~~~~~
o8comm.h:33:14: warning: unused variable 'o8bind0' [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |              ^~~~~~~
o8comm.h:32:30: warning: unused variable 'o8bind' [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |                              ^~~~~~
o8comm.h:32:23: warning: unused variable 'alist' [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |                       ^~~~~
o8comm.h:32:15: warning: unused variable 'violis' [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |               ^~~~~~
o8comm.h:30:38: warning: unused variable 'matsc' [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                                      ^~~~~
o8comm.h:30:32: warning: unused variable 'diag0' [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                                ^~~~~
o8comm.h:30:24: warning: unused variable 'scalm2' [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                        ^~~~~~
o8comm.h:30:18: warning: unused variable 'scalm' [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                  ^~~~~
o8comm.h:30:16: warning: unused variable 'a' [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                ^
o8comm.h:26:14: warning: unused variable 'colle' [-Wunused-variable]
   26 |             *colle;
      |              ^~~~~
o8comm.h:25:14: warning: unused variable 'cscal' [-Wunused-variable]
   25 |             *cscal,
      |              ^~~~~
o8comm.h:24:27: warning: unused variable 'diag' [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                           ^~~~
o8comm.h:24:20: warning: unused variable 'betaq' [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                    ^~~~~
o8comm.h:24:16: warning: unused variable 'qr' [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                ^~
o8comm.h:23:34: warning: unused variable 'rank' [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                                  ^~~~
o8comm.h:23:28: warning: unused variable 'colno' [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                            ^~~~~
o8comm.h:23:21: warning: unused variable 'perm1' [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                     ^~~~~
o8comm.h:23:15: warning: unused variable 'perm' [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |               ^~~~
o8comm.h:21:21: warning: unused variable 'gresn' [-Wunused-variable]
   21 |             **gres,*gresn;
      |                     ^~~~~
o8comm.h:21:15: warning: unused variable 'gres' [-Wunused-variable]
   21 |             **gres,*gresn;
      |               ^~~~
o8comm.h:20:38: warning: unused variable 'gphi1' [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                                      ^~~~~
o8comm.h:20:31: warning: unused variable 'gphi0' [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                               ^~~~~
o8comm.h:20:26: warning: unused variable 'qgf' [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                          ^~~
o8comm.h:20:21: warning: unused variable 'gfn' [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                     ^~~
o8comm.h:20:15: warning: unused variable 'gradf' [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |               ^~~~~
o8comm.h:18:24: warning: unused variable 'resmin' [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |                        ^~~~~~
o8comm.h:18:18: warning: unused variable 'difx' [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |                  ^~~~
o8comm.h:18:14: warning: unused variable 'dd' [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |              ^~
o8comm.h:17:42: warning: unused variable 'd0' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                          ^~
o8comm.h:17:39: warning: unused variable 'd' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                       ^
o8comm.h:17:33: warning: unused variable 'xmin' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                 ^~~~
o8comm.h:17:29: warning: unused variable 'x1' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                             ^~
o8comm.h:17:25: warning: unused variable 'x0' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                         ^~
o8comm.h:17:15: warning: unused variable 'donlp2_x' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |               ^~~~~~~~
o8comm.h:16:39: warning: unused variable 'upsim' [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                                       ^~~~~
o8comm.h:16:32: warning: unused variable 'cosphi' [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                                ^~~~~~
o8comm.h:16:25: warning: unused variable 'dirder' [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                         ^~~~~~
o8comm.h:16:18: warning: unused variable 'sigmin' [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                  ^~~~~~
o8comm.h:16:14: warning: unused variable 'sig' [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |              ^~~
o8comm.h:15:70: warning: unused variable 'd0norm' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                                      ^~~~~~
o8comm.h:15:63: warning: unused variable 'ddnorm' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                               ^~~~~~
o8comm.h:15:57: warning: unused variable 'dscal' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                         ^~~~~
o8comm.h:15:52: warning: unused variable 'sig0' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                    ^~~~
o8comm.h:15:45: warning: unused variable 'x0norm' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                             ^~~~~~
o8comm.h:15:39: warning: unused variable 'xnorm' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                       ^~~~~
o8comm.h:15:34: warning: unused variable 'b2n0' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                  ^~~~
o8comm.h:15:30: warning: unused variable 'b2n' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                              ^~~
o8comm.h:15:18: warning: unused variable 'donlp2_fmin' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                  ^~~~~~~~~~~
o8comm.h:15:13: warning: unused variable 'fxst' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |             ^~~~
o8comm.h:14:41: warning: unused variable 'fx1' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                                         ^~~
o8comm.h:14:37: warning: unused variable 'fx0' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                                     ^~~
o8comm.h:14:27: warning: unused variable 'phimin' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                           ^~~~~~
o8comm.h:14:22: warning: unused variable 'phi1' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                      ^~~~
o8comm.h:14:17: warning: unused variable 'phi0' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                 ^~~~
o8comm.h:14:13: warning: unused variable 'phi' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |             ^~~
o8comm.h:13:24: warning: unused variable 'psimin' [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |                        ^~~~~~
o8comm.h:13:18: warning: unused variable 'psist' [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |                  ^~~~~
o8comm.h:13:13: warning: unused variable 'psi1' [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |             ^~~~
o8comm.h:12:42: warning: unused variable 'psi0' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                                          ^~~~
o8comm.h:12:38: warning: unused variable 'psi' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                                      ^~~
o8comm.h:12:31: warning: unused variable 'upsist' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                               ^~~~~~
o8comm.h:12:25: warning: unused variable 'upsi1' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                         ^~~~~
o8comm.h:12:19: warning: unused variable 'upsi0' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                   ^~~~~
o8comm.h:12:14: warning: unused variable 'upsi' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |              ^~~~
o8comm.h:10:21: warning: unused variable 'phase' [-Wunused-variable]
   10 | X IINTEGER   itstep,phase;
      |                     ^~~~~
o8comm.h:10:14: warning: unused variable 'itstep' [-Wunused-variable]
   10 | X IINTEGER   itstep,phase;
      |              ^~~~~~
o8comm.h:9:16: warning: unused variable 'accinf' [-Wunused-variable]
    9 | X DDOUBLE    **accinf;
      |                ^~~~~~
o8comm.h:8:14: warning: unused variable 'optite' [-Wunused-variable]
    8 | X RREAL      optite;
      |              ^~~~~~
o8comm.h:7:14: warning: unused variable 'runtim' [-Wunused-variable]
    7 | X RREAL      runtim;
      |              ^~~~~~
In file included from o8comm.h:5:
o8fuco.h:33:13: warning: unused variable 'cfuerr' [-Wunused-variable]
   33 | X LLOGICAL *cfuerr;
      |             ^~~~~~
o8fuco.h:31:13: warning: unused variable 'gconst' [-Wunused-variable]
   31 | X LLOGICAL *gconst;
      |             ^~~~~~
o8fuco.h:29:14: warning: unused variable 'gunit' [-Wunused-variable]
   29 | X IINTEGER **gunit;
      |              ^~~~~
o8fuco.h:27:13: warning: unused variable 'nonlinlist' [-Wunused-variable]
   27 | X IINTEGER *nonlinlist;
      |             ^~~~~~~~~~
o8fuco.h:25:15: warning: unused variable 'ng' [-Wunused-variable]
   25 | X IINTEGER nh,ng;
      |               ^~
o8fuco.h:25:12: warning: unused variable 'nh' [-Wunused-variable]
   25 | X IINTEGER nh,ng;
      |            ^~
o8fuco.h:20:22: warning: unused variable 'confuerr' [-Wunused-variable]
   20 | X LLOGICAL   ffuerr,*confuerr;
      |                      ^~~~~~~~
o8fuco.h:20:14: warning: unused variable 'ffuerr' [-Wunused-variable]
   20 | X LLOGICAL   ffuerr,*confuerr;
      |              ^~~~~~
o8fuco.h:18:37: warning: unused variable 'cgres' [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                                     ^~~~~
o8fuco.h:18:31: warning: unused variable 'cres' [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                               ^~~~
o8fuco.h:18:23: warning: unused variable 'cfincr' [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                       ^~~~~~
o8fuco.h:18:18: warning: unused variable 'icgf' [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                  ^~~~
o8fuco.h:18:14: warning: unused variable 'icf' [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |              ^~~
o8fuco.h:16:40: warning: unused variable 'cold' [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                                        ^~~~
o8fuco.h:16:33: warning: unused variable 'analyt' [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                                 ^~~~~~
o8fuco.h:16:26: warning: unused variable 'silent' [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                          ^~~~~~
o8fuco.h:16:20: warning: unused variable 'eqres' [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                    ^~~~~
o8fuco.h:16:14: warning: unused variable 'ident' [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |              ^~~~~
o8fuco.h:15:37: warning: unused variable 'singul' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                                     ^~~~~~
o8fuco.h:15:33: warning: unused variable 'te3' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                                 ^~~
o8fuco.h:15:29: warning: unused variable 'te2' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                             ^~~
o8fuco.h:15:25: warning: unused variable 'te1' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                         ^~~
o8fuco.h:15:21: warning: unused variable 'te0' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                     ^~~
o8fuco.h:15:14: warning: unused variable 'intakt' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |              ^~~~~~
o8fuco.h:13:14: warning: unused variable 'epsdif' [-Wunused-variable]
   13 | X DDOUBLE    epsdif;
      |              ^~~~~~
o8fuco.h:11:13: warning: unused variable 'name' [-Wunused-variable]
   11 | X char      name[41];
      |             ^~~~
o8fuco.h:9:28: warning: unused variable 'deldif' [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |                            ^~~~~~
o8fuco.h:9:21: warning: unused variable 'tolmac' [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |                     ^~~~~~
o8fuco.h:9:14: warning: unused variable 'epsmac' [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |              ^~~~~~
o8fuco.h:7:52: warning: unused variable 'mdualm' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                                    ^~~~~~
o8fuco.h:7:44: warning: unused variable 'ndualm' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                            ^~~~~~
o8fuco.h:7:37: warning: unused variable 'nstep' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                     ^~~~~
o8fuco.h:7:29: warning: unused variable 'nonlin' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                             ^~~~~~
o8fuco.h:7:24: warning: unused variable 'nlin' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                        ^~~~
o8fuco.h:7:19: warning: unused variable 'nres' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                   ^~~~
o8fuco.h:7:16: warning: unused variable 'nr' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                ^~
o8fuco.h:7:14: warning: unused variable 'n' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |              ^
o8fuco.h:5:26: warning: unused variable 'lup' [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |                          ^~~
o8fuco.h:5:20: warning: unused variable 'llow' [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |                    ^~~~
o8fuco.h:5:15: warning: unused variable 'val' [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |               ^~~
pplr_c.c:242:20: warning: 'tempx' may be used uninitialized [-Wmaybe-uninitialized]
  242 |                 if (tempx<=1.0e-3)
      |                    ^
pplr_c.c:186:39: note: 'tempx' was declared here
  186 |         double v[MAX_NUM_COND], temp, tempx, foptold, fopt, lamda10[MAX_NUM_COND];
      |                                       ^~~~~
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG     -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c pumaclust_c.c -o pumaclust_c.o
In file included from pumaclust_c.c:162:
o8comm.h: In function 'workout':
o8comm.h:60:15: warning: unused variable 'xst' [-Wunused-variable]
   60 | X DDOUBLE    *xst;
      |               ^~~
o8comm.h:58:14: warning: unused variable 'nreset' [-Wunused-variable]
   58 | X IINTEGER   nreset;
      |              ^~~~~~
o8comm.h:56:23: warning: unused variable 'big' [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |                       ^~~
o8comm.h:56:20: warning: unused variable 'up' [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |                    ^~
o8comm.h:56:15: warning: unused variable 'low' [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |               ^~~
o8comm.h:54:19: warning: unused variable 'og' [-Wunused-variable]
   54 | X DDOUBLE    *ug,*og;
      |                   ^~
o8comm.h:54:15: warning: unused variable 'ug' [-Wunused-variable]
   54 | X DDOUBLE    *ug,*og;
      |               ^~
o8comm.h:52:20: warning: unused variable 'meu' [-Wunused-variable]
   52 | X FILE      *prou,*meu;
      |                    ^~~
o8comm.h:52:14: warning: unused variable 'prou' [-Wunused-variable]
   52 | X FILE      *prou,*meu;
      |              ^~~~
o8comm.h:50:33: warning: unused variable 'lastch' [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                                 ^~~~~~
o8comm.h:50:26: warning: unused variable 'lastup' [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                          ^~~~~~
o8comm.h:50:19: warning: unused variable 'lastdw' [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                   ^~~~~~
o8comm.h:50:14: warning: unused variable 'clow' [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |              ^~~~
o8comm.h:49:14: warning: unused variable 'level' [-Wunused-variable]
   49 | X DDOUBLE    level;
      |              ^~~~~
o8comm.h:47:21: warning: unused variable 'stmaxl' [-Wunused-variable]
   47 | X DDOUBLE    delta1,stmaxl;
      |                     ^~~~~~
o8comm.h:47:14: warning: unused variable 'delta1' [-Wunused-variable]
   47 | X DDOUBLE    delta1,stmaxl;
      |              ^~~~~~
o8comm.h:46:50: warning: unused variable 'stptrm' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                                  ^~~~~~
o8comm.h:46:44: warning: unused variable 'delta' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                            ^~~~~
o8comm.h:46:38: warning: unused variable 'sigla' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                      ^~~~~
o8comm.h:46:32: warning: unused variable 'sigsm' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                ^~~~~
o8comm.h:46:26: warning: unused variable 'theta' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                          ^~~~~
o8comm.h:46:20: warning: unused variable 'bbeta' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                    ^~~~~
o8comm.h:46:14: warning: unused variable 'alpha' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |              ^~~~~
o8comm.h:44:40: warning: unused variable 'taumax' [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                                        ^~~~~~
o8comm.h:44:33: warning: unused variable 'taufac' [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                                 ^~~~~~
o8comm.h:44:27: warning: unused variable 'tauqp' [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                           ^~~~~
o8comm.h:44:20: warning: unused variable 'updmy0' [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                    ^~~~~~
o8comm.h:44:13: warning: unused variable 'scfmax' [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |             ^~~~~~
o8comm.h:43:46: warning: unused variable 'c1d' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                              ^~~
o8comm.h:43:41: warning: unused variable 'epsx' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                         ^~~~
o8comm.h:43:37: warning: unused variable 'eta' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                     ^~~
o8comm.h:43:32: warning: unused variable 'rho1' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                ^~~~
o8comm.h:43:28: warning: unused variable 'rho' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                            ^~~
o8comm.h:43:21: warning: unused variable 'smallw' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                     ^~~~~~
o8comm.h:43:14: warning: unused variable 'smalld' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |              ^~~~~~
o8comm.h:42:45: warning: unused variable 'ny' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                             ^~
o8comm.h:42:41: warning: unused variable 'tau' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                         ^~~
o8comm.h:42:36: warning: unused variable 'tau0' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                    ^~~~
o8comm.h:42:29: warning: unused variable 'delmin' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                             ^~~~~~
o8comm.h:42:23: warning: unused variable 'del01' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                       ^~~~~
o8comm.h:42:18: warning: unused variable 'del0' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                  ^~~~
o8comm.h:42:14: warning: unused variable 'del' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |              ^~~
o8comm.h:41:14: warning: unused variable 'iterma' [-Wunused-variable]
   41 | X IINTEGER   iterma;
      |              ^~~~~~
o8comm.h:39:32: warning: unused variable 'work' [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                                ^~~~
o8comm.h:39:24: warning: unused variable 'infeas' [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                        ^~~~~~
o8comm.h:39:18: warning: unused variable 'slack' [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                  ^~~~~
o8comm.h:39:14: warning: unused variable 'yu' [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |              ^~
o8comm.h:38:24: warning: unused variable 'scf0' [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |                        ^~~~
o8comm.h:38:20: warning: unused variable 'scf' [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |                    ^~~
o8comm.h:38:14: warning: unused variable 'resst' [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |              ^~~~~
o8comm.h:37:20: warning: unused variable 'res1' [-Wunused-variable]
   37 |             *res0,*res1,
      |                    ^~~~
o8comm.h:37:14: warning: unused variable 'res0' [-Wunused-variable]
   37 |             *res0,*res1,
      |              ^~~~
o8comm.h:36:21: warning: unused variable 'res' [-Wunused-variable]
   36 |             *w,*w1,*res,
      |                     ^~~
o8comm.h:36:17: warning: unused variable 'w1' [-Wunused-variable]
   36 |             *w,*w1,*res,
      |                 ^~
o8comm.h:36:14: warning: unused variable 'w' [-Wunused-variable]
   36 |             *w,*w1,*res,
      |              ^
o8comm.h:35:18: warning: unused variable 'u0' [-Wunused-variable]
   35 | X DDOUBLE    *u,*u0,
      |                  ^~
o8comm.h:35:15: warning: unused variable 'u' [-Wunused-variable]
   35 | X DDOUBLE    *u,*u0,
      |               ^
o8comm.h:33:32: warning: unused variable 'clist' [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |                                ^~~~~
o8comm.h:33:24: warning: unused variable 'aalist' [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |                        ^~~~~~
o8comm.h:33:14: warning: unused variable 'o8bind0' [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |              ^~~~~~~
o8comm.h:32:30: warning: unused variable 'o8bind' [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |                              ^~~~~~
o8comm.h:32:23: warning: unused variable 'alist' [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |                       ^~~~~
o8comm.h:32:15: warning: unused variable 'violis' [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |               ^~~~~~
o8comm.h:30:38: warning: unused variable 'matsc' [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                                      ^~~~~
o8comm.h:30:32: warning: unused variable 'diag0' [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                                ^~~~~
o8comm.h:30:24: warning: unused variable 'scalm2' [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                        ^~~~~~
o8comm.h:30:18: warning: unused variable 'scalm' [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                  ^~~~~
o8comm.h:30:16: warning: unused variable 'a' [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                ^
o8comm.h:26:14: warning: unused variable 'colle' [-Wunused-variable]
   26 |             *colle;
      |              ^~~~~
o8comm.h:25:14: warning: unused variable 'cscal' [-Wunused-variable]
   25 |             *cscal,
      |              ^~~~~
o8comm.h:24:27: warning: unused variable 'diag' [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                           ^~~~
o8comm.h:24:20: warning: unused variable 'betaq' [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                    ^~~~~
o8comm.h:24:16: warning: unused variable 'qr' [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                ^~
o8comm.h:23:34: warning: unused variable 'rank' [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                                  ^~~~
o8comm.h:23:28: warning: unused variable 'colno' [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                            ^~~~~
o8comm.h:23:21: warning: unused variable 'perm1' [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                     ^~~~~
o8comm.h:23:15: warning: unused variable 'perm' [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |               ^~~~
o8comm.h:21:21: warning: unused variable 'gresn' [-Wunused-variable]
   21 |             **gres,*gresn;
      |                     ^~~~~
o8comm.h:21:15: warning: unused variable 'gres' [-Wunused-variable]
   21 |             **gres,*gresn;
      |               ^~~~
o8comm.h:20:38: warning: unused variable 'gphi1' [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                                      ^~~~~
o8comm.h:20:31: warning: unused variable 'gphi0' [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                               ^~~~~
o8comm.h:20:26: warning: unused variable 'qgf' [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                          ^~~
o8comm.h:20:21: warning: unused variable 'gfn' [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                     ^~~
o8comm.h:20:15: warning: unused variable 'gradf' [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |               ^~~~~
o8comm.h:18:24: warning: unused variable 'resmin' [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |                        ^~~~~~
o8comm.h:18:18: warning: unused variable 'difx' [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |                  ^~~~
o8comm.h:18:14: warning: unused variable 'dd' [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |              ^~
o8comm.h:17:42: warning: unused variable 'd0' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                          ^~
o8comm.h:17:39: warning: unused variable 'd' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                       ^
o8comm.h:17:33: warning: unused variable 'xmin' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                 ^~~~
o8comm.h:17:29: warning: unused variable 'x1' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                             ^~
o8comm.h:17:25: warning: unused variable 'x0' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                         ^~
o8comm.h:17:15: warning: unused variable 'donlp2_x' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |               ^~~~~~~~
o8comm.h:16:39: warning: unused variable 'upsim' [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                                       ^~~~~
o8comm.h:16:32: warning: unused variable 'cosphi' [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                                ^~~~~~
o8comm.h:16:25: warning: unused variable 'dirder' [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                         ^~~~~~
o8comm.h:16:18: warning: unused variable 'sigmin' [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                  ^~~~~~
o8comm.h:16:14: warning: unused variable 'sig' [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |              ^~~
o8comm.h:15:70: warning: unused variable 'd0norm' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                                      ^~~~~~
o8comm.h:15:63: warning: unused variable 'ddnorm' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                               ^~~~~~
o8comm.h:15:57: warning: unused variable 'dscal' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                         ^~~~~
o8comm.h:15:52: warning: unused variable 'sig0' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                    ^~~~
o8comm.h:15:45: warning: unused variable 'x0norm' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                             ^~~~~~
o8comm.h:15:39: warning: unused variable 'xnorm' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                       ^~~~~
o8comm.h:15:34: warning: unused variable 'b2n0' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                  ^~~~
o8comm.h:15:30: warning: unused variable 'b2n' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                              ^~~
o8comm.h:15:18: warning: unused variable 'donlp2_fmin' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                  ^~~~~~~~~~~
o8comm.h:15:13: warning: unused variable 'fxst' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |             ^~~~
o8comm.h:14:41: warning: unused variable 'fx1' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                                         ^~~
o8comm.h:14:37: warning: unused variable 'fx0' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                                     ^~~
o8comm.h:14:27: warning: unused variable 'phimin' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                           ^~~~~~
o8comm.h:14:22: warning: unused variable 'phi1' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                      ^~~~
o8comm.h:14:17: warning: unused variable 'phi0' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                 ^~~~
o8comm.h:14:13: warning: unused variable 'phi' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |             ^~~
o8comm.h:13:24: warning: unused variable 'psimin' [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |                        ^~~~~~
o8comm.h:13:18: warning: unused variable 'psist' [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |                  ^~~~~
o8comm.h:13:13: warning: unused variable 'psi1' [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |             ^~~~
o8comm.h:12:42: warning: unused variable 'psi0' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                                          ^~~~
o8comm.h:12:38: warning: unused variable 'psi' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                                      ^~~
o8comm.h:12:31: warning: unused variable 'upsist' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                               ^~~~~~
o8comm.h:12:25: warning: unused variable 'upsi1' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                         ^~~~~
o8comm.h:12:19: warning: unused variable 'upsi0' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                   ^~~~~
o8comm.h:12:14: warning: unused variable 'upsi' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |              ^~~~
o8comm.h:10:21: warning: unused variable 'phase' [-Wunused-variable]
   10 | X IINTEGER   itstep,phase;
      |                     ^~~~~
o8comm.h:10:14: warning: unused variable 'itstep' [-Wunused-variable]
   10 | X IINTEGER   itstep,phase;
      |              ^~~~~~
o8comm.h:9:16: warning: unused variable 'accinf' [-Wunused-variable]
    9 | X DDOUBLE    **accinf;
      |                ^~~~~~
o8comm.h:8:14: warning: unused variable 'optite' [-Wunused-variable]
    8 | X RREAL      optite;
      |              ^~~~~~
o8comm.h:7:14: warning: unused variable 'runtim' [-Wunused-variable]
    7 | X RREAL      runtim;
      |              ^~~~~~
In file included from o8comm.h:5:
o8fuco.h:33:13: warning: unused variable 'cfuerr' [-Wunused-variable]
   33 | X LLOGICAL *cfuerr;
      |             ^~~~~~
o8fuco.h:31:13: warning: unused variable 'gconst' [-Wunused-variable]
   31 | X LLOGICAL *gconst;
      |             ^~~~~~
o8fuco.h:29:14: warning: unused variable 'gunit' [-Wunused-variable]
   29 | X IINTEGER **gunit;
      |              ^~~~~
o8fuco.h:27:13: warning: unused variable 'nonlinlist' [-Wunused-variable]
   27 | X IINTEGER *nonlinlist;
      |             ^~~~~~~~~~
o8fuco.h:25:15: warning: unused variable 'ng' [-Wunused-variable]
   25 | X IINTEGER nh,ng;
      |               ^~
o8fuco.h:25:12: warning: unused variable 'nh' [-Wunused-variable]
   25 | X IINTEGER nh,ng;
      |            ^~
o8fuco.h:20:22: warning: unused variable 'confuerr' [-Wunused-variable]
   20 | X LLOGICAL   ffuerr,*confuerr;
      |                      ^~~~~~~~
o8fuco.h:20:14: warning: unused variable 'ffuerr' [-Wunused-variable]
   20 | X LLOGICAL   ffuerr,*confuerr;
      |              ^~~~~~
o8fuco.h:18:37: warning: unused variable 'cgres' [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                                     ^~~~~
o8fuco.h:18:31: warning: unused variable 'cres' [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                               ^~~~
o8fuco.h:18:23: warning: unused variable 'cfincr' [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                       ^~~~~~
o8fuco.h:18:18: warning: unused variable 'icgf' [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                  ^~~~
o8fuco.h:18:14: warning: unused variable 'icf' [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |              ^~~
o8fuco.h:16:40: warning: unused variable 'cold' [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                                        ^~~~
o8fuco.h:16:33: warning: unused variable 'analyt' [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                                 ^~~~~~
o8fuco.h:16:26: warning: unused variable 'silent' [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                          ^~~~~~
o8fuco.h:16:20: warning: unused variable 'eqres' [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                    ^~~~~
o8fuco.h:16:14: warning: unused variable 'ident' [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |              ^~~~~
o8fuco.h:15:37: warning: unused variable 'singul' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                                     ^~~~~~
o8fuco.h:15:33: warning: unused variable 'te3' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                                 ^~~
o8fuco.h:15:29: warning: unused variable 'te2' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                             ^~~
o8fuco.h:15:25: warning: unused variable 'te1' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                         ^~~
o8fuco.h:15:21: warning: unused variable 'te0' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                     ^~~
o8fuco.h:15:14: warning: unused variable 'intakt' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |              ^~~~~~
o8fuco.h:13:14: warning: unused variable 'epsdif' [-Wunused-variable]
   13 | X DDOUBLE    epsdif;
      |              ^~~~~~
o8fuco.h:11:13: warning: unused variable 'name' [-Wunused-variable]
   11 | X char      name[41];
      |             ^~~~
o8fuco.h:9:28: warning: unused variable 'deldif' [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |                            ^~~~~~
o8fuco.h:9:21: warning: unused variable 'tolmac' [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |                     ^~~~~~
o8fuco.h:9:14: warning: unused variable 'epsmac' [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |              ^~~~~~
o8fuco.h:7:52: warning: unused variable 'mdualm' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                                    ^~~~~~
o8fuco.h:7:44: warning: unused variable 'ndualm' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                            ^~~~~~
o8fuco.h:7:37: warning: unused variable 'nstep' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                     ^~~~~
o8fuco.h:7:29: warning: unused variable 'nonlin' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                             ^~~~~~
o8fuco.h:7:24: warning: unused variable 'nlin' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                        ^~~~
o8fuco.h:7:19: warning: unused variable 'nres' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                   ^~~~
o8fuco.h:7:16: warning: unused variable 'nr' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                ^~
o8fuco.h:7:14: warning: unused variable 'n' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |              ^
o8fuco.h:5:26: warning: unused variable 'lup' [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |                          ^~~
o8fuco.h:5:20: warning: unused variable 'llow' [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |                    ^~~~
o8fuco.h:5:15: warning: unused variable 'val' [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |               ^~~
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG     -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c pumaclustii_c.c -o pumaclustii_c.o
pumaclustii_c.c: In function 'workout_pumaclustii':
pumaclustii_c.c:255:49: warning: variable 'temp2' set but not used [-Wunused-but-set-variable]
  255 |         double  *exprs=NULL, *vars=NULL, temp, *temp2, temp3, **t3=NULL, *t4=NULL;
      |                                                 ^~~~~
In file included from pumaclustii_c.c:248:
o8comm.h:60:15: warning: unused variable 'xst' [-Wunused-variable]
   60 | X DDOUBLE    *xst;
      |               ^~~
o8comm.h:58:14: warning: unused variable 'nreset' [-Wunused-variable]
   58 | X IINTEGER   nreset;
      |              ^~~~~~
o8comm.h:56:23: warning: unused variable 'big' [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |                       ^~~
o8comm.h:56:20: warning: unused variable 'up' [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |                    ^~
o8comm.h:56:15: warning: unused variable 'low' [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |               ^~~
o8comm.h:54:19: warning: unused variable 'og' [-Wunused-variable]
   54 | X DDOUBLE    *ug,*og;
      |                   ^~
o8comm.h:54:15: warning: unused variable 'ug' [-Wunused-variable]
   54 | X DDOUBLE    *ug,*og;
      |               ^~
o8comm.h:52:20: warning: unused variable 'meu' [-Wunused-variable]
   52 | X FILE      *prou,*meu;
      |                    ^~~
o8comm.h:52:14: warning: unused variable 'prou' [-Wunused-variable]
   52 | X FILE      *prou,*meu;
      |              ^~~~
o8comm.h:50:33: warning: unused variable 'lastch' [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                                 ^~~~~~
o8comm.h:50:26: warning: unused variable 'lastup' [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                          ^~~~~~
o8comm.h:50:19: warning: unused variable 'lastdw' [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                   ^~~~~~
o8comm.h:50:14: warning: unused variable 'clow' [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |              ^~~~
o8comm.h:49:14: warning: unused variable 'level' [-Wunused-variable]
   49 | X DDOUBLE    level;
      |              ^~~~~
o8comm.h:47:21: warning: unused variable 'stmaxl' [-Wunused-variable]
   47 | X DDOUBLE    delta1,stmaxl;
      |                     ^~~~~~
o8comm.h:47:14: warning: unused variable 'delta1' [-Wunused-variable]
   47 | X DDOUBLE    delta1,stmaxl;
      |              ^~~~~~
o8comm.h:46:50: warning: unused variable 'stptrm' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                                  ^~~~~~
o8comm.h:46:44: warning: unused variable 'delta' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                            ^~~~~
o8comm.h:46:38: warning: unused variable 'sigla' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                      ^~~~~
o8comm.h:46:32: warning: unused variable 'sigsm' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                ^~~~~
o8comm.h:46:26: warning: unused variable 'theta' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                          ^~~~~
o8comm.h:46:20: warning: unused variable 'bbeta' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                    ^~~~~
o8comm.h:46:14: warning: unused variable 'alpha' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |              ^~~~~
o8comm.h:44:40: warning: unused variable 'taumax' [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                                        ^~~~~~
o8comm.h:44:33: warning: unused variable 'taufac' [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                                 ^~~~~~
o8comm.h:44:27: warning: unused variable 'tauqp' [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                           ^~~~~
o8comm.h:44:20: warning: unused variable 'updmy0' [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                    ^~~~~~
o8comm.h:44:13: warning: unused variable 'scfmax' [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |             ^~~~~~
o8comm.h:43:46: warning: unused variable 'c1d' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                              ^~~
o8comm.h:43:41: warning: unused variable 'epsx' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                         ^~~~
o8comm.h:43:37: warning: unused variable 'eta' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                     ^~~
o8comm.h:43:32: warning: unused variable 'rho1' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                ^~~~
o8comm.h:43:28: warning: unused variable 'rho' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                            ^~~
o8comm.h:43:21: warning: unused variable 'smallw' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                     ^~~~~~
o8comm.h:43:14: warning: unused variable 'smalld' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |              ^~~~~~
o8comm.h:42:45: warning: unused variable 'ny' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                             ^~
o8comm.h:42:41: warning: unused variable 'tau' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                         ^~~
o8comm.h:42:36: warning: unused variable 'tau0' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                    ^~~~
o8comm.h:42:29: warning: unused variable 'delmin' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                             ^~~~~~
o8comm.h:42:23: warning: unused variable 'del01' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                       ^~~~~
o8comm.h:42:18: warning: unused variable 'del0' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                  ^~~~
o8comm.h:42:14: warning: unused variable 'del' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |              ^~~
o8comm.h:41:14: warning: unused variable 'iterma' [-Wunused-variable]
   41 | X IINTEGER   iterma;
      |              ^~~~~~
o8comm.h:39:32: warning: unused variable 'work' [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                                ^~~~
o8comm.h:39:24: warning: unused variable 'infeas' [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                        ^~~~~~
o8comm.h:39:18: warning: unused variable 'slack' [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                  ^~~~~
o8comm.h:39:14: warning: unused variable 'yu' [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |              ^~
o8comm.h:38:24: warning: unused variable 'scf0' [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |                        ^~~~
o8comm.h:38:20: warning: unused variable 'scf' [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |                    ^~~
o8comm.h:38:14: warning: unused variable 'resst' [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |              ^~~~~
o8comm.h:37:20: warning: unused variable 'res1' [-Wunused-variable]
   37 |             *res0,*res1,
      |                    ^~~~
o8comm.h:37:14: warning: unused variable 'res0' [-Wunused-variable]
   37 |             *res0,*res1,
      |              ^~~~
o8comm.h:36:21: warning: unused variable 'res' [-Wunused-variable]
   36 |             *w,*w1,*res,
      |                     ^~~
o8comm.h:36:17: warning: unused variable 'w1' [-Wunused-variable]
   36 |             *w,*w1,*res,
      |                 ^~
o8comm.h:36:14: warning: unused variable 'w' [-Wunused-variable]
   36 |             *w,*w1,*res,
      |              ^
o8comm.h:35:18: warning: unused variable 'u0' [-Wunused-variable]
   35 | X DDOUBLE    *u,*u0,
      |                  ^~
o8comm.h:35:15: warning: unused variable 'u' [-Wunused-variable]
   35 | X DDOUBLE    *u,*u0,
      |               ^
o8comm.h:33:32: warning: unused variable 'clist' [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |                                ^~~~~
o8comm.h:33:24: warning: unused variable 'aalist' [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |                        ^~~~~~
o8comm.h:33:14: warning: unused variable 'o8bind0' [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |              ^~~~~~~
o8comm.h:32:30: warning: unused variable 'o8bind' [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |                              ^~~~~~
o8comm.h:32:23: warning: unused variable 'alist' [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |                       ^~~~~
o8comm.h:32:15: warning: unused variable 'violis' [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |               ^~~~~~
o8comm.h:30:38: warning: unused variable 'matsc' [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                                      ^~~~~
o8comm.h:30:32: warning: unused variable 'diag0' [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                                ^~~~~
o8comm.h:30:24: warning: unused variable 'scalm2' [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                        ^~~~~~
o8comm.h:30:18: warning: unused variable 'scalm' [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                  ^~~~~
o8comm.h:30:16: warning: unused variable 'a' [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                ^
o8comm.h:26:14: warning: unused variable 'colle' [-Wunused-variable]
   26 |             *colle;
      |              ^~~~~
o8comm.h:25:14: warning: unused variable 'cscal' [-Wunused-variable]
   25 |             *cscal,
      |              ^~~~~
o8comm.h:24:27: warning: unused variable 'diag' [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                           ^~~~
o8comm.h:24:20: warning: unused variable 'betaq' [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                    ^~~~~
o8comm.h:24:16: warning: unused variable 'qr' [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                ^~
o8comm.h:23:34: warning: unused variable 'rank' [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                                  ^~~~
o8comm.h:23:28: warning: unused variable 'colno' [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                            ^~~~~
o8comm.h:23:21: warning: unused variable 'perm1' [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                     ^~~~~
o8comm.h:23:15: warning: unused variable 'perm' [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |               ^~~~
o8comm.h:21:21: warning: unused variable 'gresn' [-Wunused-variable]
   21 |             **gres,*gresn;
      |                     ^~~~~
o8comm.h:21:15: warning: unused variable 'gres' [-Wunused-variable]
   21 |             **gres,*gresn;
      |               ^~~~
o8comm.h:20:38: warning: unused variable 'gphi1' [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                                      ^~~~~
o8comm.h:20:31: warning: unused variable 'gphi0' [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                               ^~~~~
o8comm.h:20:26: warning: unused variable 'qgf' [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                          ^~~
o8comm.h:20:21: warning: unused variable 'gfn' [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                     ^~~
o8comm.h:20:15: warning: unused variable 'gradf' [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |               ^~~~~
o8comm.h:18:24: warning: unused variable 'resmin' [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |                        ^~~~~~
o8comm.h:18:18: warning: unused variable 'difx' [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |                  ^~~~
o8comm.h:18:14: warning: unused variable 'dd' [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |              ^~
o8comm.h:17:42: warning: unused variable 'd0' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                          ^~
o8comm.h:17:39: warning: unused variable 'd' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                       ^
o8comm.h:17:33: warning: unused variable 'xmin' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                 ^~~~
o8comm.h:17:29: warning: unused variable 'x1' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                             ^~
o8comm.h:17:25: warning: unused variable 'x0' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                         ^~
o8comm.h:17:15: warning: unused variable 'donlp2_x' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |               ^~~~~~~~
o8comm.h:16:39: warning: unused variable 'upsim' [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                                       ^~~~~
o8comm.h:16:32: warning: unused variable 'cosphi' [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                                ^~~~~~
o8comm.h:16:25: warning: unused variable 'dirder' [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                         ^~~~~~
o8comm.h:16:18: warning: unused variable 'sigmin' [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                  ^~~~~~
o8comm.h:16:14: warning: unused variable 'sig' [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |              ^~~
o8comm.h:15:70: warning: unused variable 'd0norm' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                                      ^~~~~~
o8comm.h:15:63: warning: unused variable 'ddnorm' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                               ^~~~~~
o8comm.h:15:57: warning: unused variable 'dscal' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                         ^~~~~
o8comm.h:15:52: warning: unused variable 'sig0' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                    ^~~~
o8comm.h:15:45: warning: unused variable 'x0norm' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                             ^~~~~~
o8comm.h:15:39: warning: unused variable 'xnorm' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                       ^~~~~
o8comm.h:15:34: warning: unused variable 'b2n0' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                  ^~~~
o8comm.h:15:30: warning: unused variable 'b2n' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                              ^~~
o8comm.h:15:18: warning: unused variable 'donlp2_fmin' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                  ^~~~~~~~~~~
o8comm.h:15:13: warning: unused variable 'fxst' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |             ^~~~
o8comm.h:14:41: warning: unused variable 'fx1' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                                         ^~~
o8comm.h:14:37: warning: unused variable 'fx0' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                                     ^~~
o8comm.h:14:34: warning: unused variable 'fx' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                                  ^~
o8comm.h:14:27: warning: unused variable 'phimin' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                           ^~~~~~
o8comm.h:14:22: warning: unused variable 'phi1' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                      ^~~~
o8comm.h:14:17: warning: unused variable 'phi0' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                 ^~~~
o8comm.h:14:13: warning: unused variable 'phi' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |             ^~~
o8comm.h:13:24: warning: unused variable 'psimin' [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |                        ^~~~~~
o8comm.h:13:18: warning: unused variable 'psist' [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |                  ^~~~~
o8comm.h:13:13: warning: unused variable 'psi1' [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |             ^~~~
o8comm.h:12:42: warning: unused variable 'psi0' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                                          ^~~~
o8comm.h:12:38: warning: unused variable 'psi' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                                      ^~~
o8comm.h:12:31: warning: unused variable 'upsist' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                               ^~~~~~
o8comm.h:12:25: warning: unused variable 'upsi1' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                         ^~~~~
o8comm.h:12:19: warning: unused variable 'upsi0' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                   ^~~~~
o8comm.h:12:14: warning: unused variable 'upsi' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |              ^~~~
o8comm.h:10:21: warning: unused variable 'phase' [-Wunused-variable]
   10 | X IINTEGER   itstep,phase;
      |                     ^~~~~
o8comm.h:10:14: warning: unused variable 'itstep' [-Wunused-variable]
   10 | X IINTEGER   itstep,phase;
      |              ^~~~~~
o8comm.h:9:16: warning: unused variable 'accinf' [-Wunused-variable]
    9 | X DDOUBLE    **accinf;
      |                ^~~~~~
o8comm.h:8:14: warning: unused variable 'optite' [-Wunused-variable]
    8 | X RREAL      optite;
      |              ^~~~~~
o8comm.h:7:14: warning: unused variable 'runtim' [-Wunused-variable]
    7 | X RREAL      runtim;
      |              ^~~~~~
In file included from o8comm.h:5:
o8fuco.h:33:13: warning: unused variable 'cfuerr' [-Wunused-variable]
   33 | X LLOGICAL *cfuerr;
      |             ^~~~~~
o8fuco.h:31:13: warning: unused variable 'gconst' [-Wunused-variable]
   31 | X LLOGICAL *gconst;
      |             ^~~~~~
o8fuco.h:29:14: warning: unused variable 'gunit' [-Wunused-variable]
   29 | X IINTEGER **gunit;
      |              ^~~~~
o8fuco.h:27:13: warning: unused variable 'nonlinlist' [-Wunused-variable]
   27 | X IINTEGER *nonlinlist;
      |             ^~~~~~~~~~
o8fuco.h:25:15: warning: unused variable 'ng' [-Wunused-variable]
   25 | X IINTEGER nh,ng;
      |               ^~
o8fuco.h:25:12: warning: unused variable 'nh' [-Wunused-variable]
   25 | X IINTEGER nh,ng;
      |            ^~
o8fuco.h:20:22: warning: unused variable 'confuerr' [-Wunused-variable]
   20 | X LLOGICAL   ffuerr,*confuerr;
      |                      ^~~~~~~~
o8fuco.h:20:14: warning: unused variable 'ffuerr' [-Wunused-variable]
   20 | X LLOGICAL   ffuerr,*confuerr;
      |              ^~~~~~
o8fuco.h:18:37: warning: unused variable 'cgres' [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                                     ^~~~~
o8fuco.h:18:31: warning: unused variable 'cres' [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                               ^~~~
o8fuco.h:18:23: warning: unused variable 'cfincr' [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                       ^~~~~~
o8fuco.h:18:18: warning: unused variable 'icgf' [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                  ^~~~
o8fuco.h:18:14: warning: unused variable 'icf' [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |              ^~~
o8fuco.h:16:40: warning: unused variable 'cold' [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                                        ^~~~
o8fuco.h:16:33: warning: unused variable 'analyt' [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                                 ^~~~~~
o8fuco.h:16:26: warning: unused variable 'silent' [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                          ^~~~~~
o8fuco.h:16:20: warning: unused variable 'eqres' [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                    ^~~~~
o8fuco.h:16:14: warning: unused variable 'ident' [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |              ^~~~~
o8fuco.h:15:37: warning: unused variable 'singul' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                                     ^~~~~~
o8fuco.h:15:33: warning: unused variable 'te3' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                                 ^~~
o8fuco.h:15:29: warning: unused variable 'te2' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                             ^~~
o8fuco.h:15:25: warning: unused variable 'te1' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                         ^~~
o8fuco.h:15:21: warning: unused variable 'te0' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                     ^~~
o8fuco.h:15:14: warning: unused variable 'intakt' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |              ^~~~~~
o8fuco.h:13:14: warning: unused variable 'epsdif' [-Wunused-variable]
   13 | X DDOUBLE    epsdif;
      |              ^~~~~~
o8fuco.h:11:13: warning: unused variable 'name' [-Wunused-variable]
   11 | X char      name[41];
      |             ^~~~
o8fuco.h:9:28: warning: unused variable 'deldif' [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |                            ^~~~~~
o8fuco.h:9:21: warning: unused variable 'tolmac' [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |                     ^~~~~~
o8fuco.h:9:14: warning: unused variable 'epsmac' [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |              ^~~~~~
o8fuco.h:7:52: warning: unused variable 'mdualm' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                                    ^~~~~~
o8fuco.h:7:44: warning: unused variable 'ndualm' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                            ^~~~~~
o8fuco.h:7:37: warning: unused variable 'nstep' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                     ^~~~~
o8fuco.h:7:29: warning: unused variable 'nonlin' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                             ^~~~~~
o8fuco.h:7:24: warning: unused variable 'nlin' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                        ^~~~
o8fuco.h:7:19: warning: unused variable 'nres' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                   ^~~~
o8fuco.h:7:16: warning: unused variable 'nr' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                ^~
o8fuco.h:7:14: warning: unused variable 'n' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |              ^
o8fuco.h:5:26: warning: unused variable 'lup' [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |                          ^~~
o8fuco.h:5:20: warning: unused variable 'llow' [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |                    ^~~~
o8fuco.h:5:15: warning: unused variable 'val' [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |               ^~~
pumaclustii_c.c:696:42: warning: 'F_t' may be used uninitialized [-Wmaybe-uninitialized]
  696 |                         in_param.F_value = F_t;
      |                         ~~~~~~~~~~~~~~~~~^~~~~
pumaclustii_c.c:258:46: note: 'F_t' was declared here
  258 |         double F_max, F0, F, Ft0, Ft, max_A, F_t;
      |                                              ^~~
pumaclustii_c.c:695:41: warning: 'K_nz_t' may be used uninitialized [-Wmaybe-uninitialized]
  695 |                         in_param.K_best = K_nz_t;
      |                         ~~~~~~~~~~~~~~~~^~~~~~~~
pumaclustii_c.c:257:19: note: 'K_nz_t' was declared here
  257 |         int K_nz, K_nz_t, n_hat, iit;
      |                   ^~~~~~
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG     -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c user_eval.c -o user_eval.o
In file included from user_eval.c:67:
o8cons.h: In function 'user_eval':
o8cons.h:11:5: warning: unused variable 'tp4' [-Wunused-variable]
   11 | tp3,tp4;
      |     ^~~
o8cons.h:11:1: warning: unused variable 'tp3' [-Wunused-variable]
   11 | tp3,tp4;
      | ^~~
o8cons.h:10:21: warning: unused variable 'tp2' [-Wunused-variable]
   10 | tm4,tm3,tm2,tm1,tp1,tp2,
      |                     ^~~
o8cons.h:10:17: warning: unused variable 'tp1' [-Wunused-variable]
   10 | tm4,tm3,tm2,tm1,tp1,tp2,
      |                 ^~~
o8cons.h:10:5: warning: unused variable 'tm3' [-Wunused-variable]
   10 | tm4,tm3,tm2,tm1,tp1,tp2,
      |     ^~~
o8cons.h:10:1: warning: unused variable 'tm4' [-Wunused-variable]
   10 | tm4,tm3,tm2,tm1,tp1,tp2,
      | ^~~
o8cons.h:9:22: warning: unused variable 'tm5' [-Wunused-variable]
    9 | tm10,tm9,tm8,tm7,tm6,tm5,
      |                      ^~~
o8cons.h:9:18: warning: unused variable 'tm6' [-Wunused-variable]
    9 | tm10,tm9,tm8,tm7,tm6,tm5,
      |                  ^~~
o8cons.h:9:14: warning: unused variable 'tm7' [-Wunused-variable]
    9 | tm10,tm9,tm8,tm7,tm6,tm5,
      |              ^~~
o8cons.h:9:10: warning: unused variable 'tm8' [-Wunused-variable]
    9 | tm10,tm9,tm8,tm7,tm6,tm5,
      |          ^~~
o8cons.h:9:6: warning: unused variable 'tm9' [-Wunused-variable]
    9 | tm10,tm9,tm8,tm7,tm6,tm5,
      |      ^~~
o8cons.h:9:1: warning: unused variable 'tm10' [-Wunused-variable]
    9 | tm10,tm9,tm8,tm7,tm6,tm5,
      | ^~~~
o8cons.h:8:5: warning: unused variable 'tm12' [-Wunused-variable]
    8 | c45,tm12,
      |     ^~~~
o8cons.h:7:22: warning: unused variable 'p9' [-Wunused-variable]
    7 | onep5,p2,p4,p5,p7,p8,p9,
      |                      ^~
o8cons.h:7:19: warning: unused variable 'p8' [-Wunused-variable]
    7 | onep5,p2,p4,p5,p7,p8,p9,
      |                   ^~
o8cons.h:7:16: warning: unused variable 'p7' [-Wunused-variable]
    7 | onep5,p2,p4,p5,p7,p8,p9,
      |                ^~
o8cons.h:7:13: warning: unused variable 'p5' [-Wunused-variable]
    7 | onep5,p2,p4,p5,p7,p8,p9,
      |             ^~
o8cons.h:7:7: warning: unused variable 'p2' [-Wunused-variable]
    7 | onep5,p2,p4,p5,p7,p8,p9,
      |       ^~
o8cons.h:7:1: warning: unused variable 'onep5' [-Wunused-variable]
    7 | onep5,p2,p4,p5,p7,p8,p9,
      | ^~~~~
o8cons.h:6:20: warning: unused variable 'onep3' [-Wunused-variable]
    6 | twom2,twop4,twop11,onep3,
      |                    ^~~~~
o8cons.h:6:13: warning: unused variable 'twop11' [-Wunused-variable]
    6 | twom2,twop4,twop11,onep3,
      |             ^~~~~~
o8cons.h:6:7: warning: unused variable 'twop4' [-Wunused-variable]
    6 | twom2,twop4,twop11,onep3,
      |       ^~~~~
o8cons.h:6:1: warning: unused variable 'twom2' [-Wunused-variable]
    6 | twom2,twop4,twop11,onep3,
      | ^~~~~
o8cons.h:5:6: warning: unused variable 'six' [-Wunused-variable]
    5 | five,six,seven,
      |      ^~~
o8cons.h:5:1: warning: unused variable 'five' [-Wunused-variable]
    5 | five,six,seven,
      | ^~~~
o8cons.h:4:31: warning: unused variable 'two' [-Wunused-variable]
    4 | extern const DDOUBLE zero,one,two,three,four,
      |                               ^~~
In file included from user_eval.c:65:
o8fint.h:23:25: warning: unused variable 'corr' [-Wunused-variable]
   23 | X LLOGICAL   bloc,valid,corr;
      |                         ^~~~
o8fint.h:23:14: warning: unused variable 'bloc' [-Wunused-variable]
   23 | X LLOGICAL   bloc,valid,corr;
      |              ^~~~
In file included from user_eval.c:64:
o8comm.h:60:15: warning: unused variable 'xst' [-Wunused-variable]
   60 | X DDOUBLE    *xst;
      |               ^~~
o8comm.h:58:14: warning: unused variable 'nreset' [-Wunused-variable]
   58 | X IINTEGER   nreset;
      |              ^~~~~~
o8comm.h:56:23: warning: unused variable 'big' [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |                       ^~~
o8comm.h:56:20: warning: unused variable 'up' [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |                    ^~
o8comm.h:56:15: warning: unused variable 'low' [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |               ^~~
o8comm.h:54:19: warning: unused variable 'og' [-Wunused-variable]
   54 | X DDOUBLE    *ug,*og;
      |                   ^~
o8comm.h:54:15: warning: unused variable 'ug' [-Wunused-variable]
   54 | X DDOUBLE    *ug,*og;
      |               ^~
o8comm.h:52:20: warning: unused variable 'meu' [-Wunused-variable]
   52 | X FILE      *prou,*meu;
      |                    ^~~
o8comm.h:52:14: warning: unused variable 'prou' [-Wunused-variable]
   52 | X FILE      *prou,*meu;
      |              ^~~~
o8comm.h:50:33: warning: unused variable 'lastch' [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                                 ^~~~~~
o8comm.h:50:26: warning: unused variable 'lastup' [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                          ^~~~~~
o8comm.h:50:19: warning: unused variable 'lastdw' [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                   ^~~~~~
o8comm.h:50:14: warning: unused variable 'clow' [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |              ^~~~
o8comm.h:49:14: warning: unused variable 'level' [-Wunused-variable]
   49 | X DDOUBLE    level;
      |              ^~~~~
o8comm.h:47:21: warning: unused variable 'stmaxl' [-Wunused-variable]
   47 | X DDOUBLE    delta1,stmaxl;
      |                     ^~~~~~
o8comm.h:47:14: warning: unused variable 'delta1' [-Wunused-variable]
   47 | X DDOUBLE    delta1,stmaxl;
      |              ^~~~~~
o8comm.h:46:50: warning: unused variable 'stptrm' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                                  ^~~~~~
o8comm.h:46:44: warning: unused variable 'delta' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                            ^~~~~
o8comm.h:46:38: warning: unused variable 'sigla' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                      ^~~~~
o8comm.h:46:32: warning: unused variable 'sigsm' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                ^~~~~
o8comm.h:46:26: warning: unused variable 'theta' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                          ^~~~~
o8comm.h:46:20: warning: unused variable 'bbeta' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                    ^~~~~
o8comm.h:46:14: warning: unused variable 'alpha' [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |              ^~~~~
o8comm.h:44:40: warning: unused variable 'taumax' [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                                        ^~~~~~
o8comm.h:44:33: warning: unused variable 'taufac' [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                                 ^~~~~~
o8comm.h:44:27: warning: unused variable 'tauqp' [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                           ^~~~~
o8comm.h:44:20: warning: unused variable 'updmy0' [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                    ^~~~~~
o8comm.h:44:13: warning: unused variable 'scfmax' [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |             ^~~~~~
o8comm.h:43:46: warning: unused variable 'c1d' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                              ^~~
o8comm.h:43:41: warning: unused variable 'epsx' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                         ^~~~
o8comm.h:43:37: warning: unused variable 'eta' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                     ^~~
o8comm.h:43:32: warning: unused variable 'rho1' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                ^~~~
o8comm.h:43:28: warning: unused variable 'rho' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                            ^~~
o8comm.h:43:21: warning: unused variable 'smallw' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                     ^~~~~~
o8comm.h:43:14: warning: unused variable 'smalld' [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |              ^~~~~~
o8comm.h:42:45: warning: unused variable 'ny' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                             ^~
o8comm.h:42:41: warning: unused variable 'tau' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                         ^~~
o8comm.h:42:36: warning: unused variable 'tau0' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                    ^~~~
o8comm.h:42:29: warning: unused variable 'delmin' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                             ^~~~~~
o8comm.h:42:23: warning: unused variable 'del01' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                       ^~~~~
o8comm.h:42:18: warning: unused variable 'del0' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                  ^~~~
o8comm.h:42:14: warning: unused variable 'del' [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |              ^~~
o8comm.h:41:14: warning: unused variable 'iterma' [-Wunused-variable]
   41 | X IINTEGER   iterma;
      |              ^~~~~~
o8comm.h:39:32: warning: unused variable 'work' [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                                ^~~~
o8comm.h:39:24: warning: unused variable 'infeas' [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                        ^~~~~~
o8comm.h:39:18: warning: unused variable 'slack' [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                  ^~~~~
o8comm.h:39:14: warning: unused variable 'yu' [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |              ^~
o8comm.h:38:24: warning: unused variable 'scf0' [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |                        ^~~~
o8comm.h:38:20: warning: unused variable 'scf' [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |                    ^~~
o8comm.h:38:14: warning: unused variable 'resst' [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |              ^~~~~
o8comm.h:37:20: warning: unused variable 'res1' [-Wunused-variable]
   37 |             *res0,*res1,
      |                    ^~~~
o8comm.h:37:14: warning: unused variable 'res0' [-Wunused-variable]
   37 |             *res0,*res1,
      |              ^~~~
o8comm.h:36:21: warning: unused variable 'res' [-Wunused-variable]
   36 |             *w,*w1,*res,
      |                     ^~~
o8comm.h:36:17: warning: unused variable 'w1' [-Wunused-variable]
   36 |             *w,*w1,*res,
      |                 ^~
o8comm.h:36:14: warning: unused variable 'w' [-Wunused-variable]
   36 |             *w,*w1,*res,
      |              ^
o8comm.h:35:18: warning: unused variable 'u0' [-Wunused-variable]
   35 | X DDOUBLE    *u,*u0,
      |                  ^~
o8comm.h:35:15: warning: unused variable 'u' [-Wunused-variable]
   35 | X DDOUBLE    *u,*u0,
      |               ^
o8comm.h:33:32: warning: unused variable 'clist' [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |                                ^~~~~
o8comm.h:33:24: warning: unused variable 'aalist' [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |                        ^~~~~~
o8comm.h:33:14: warning: unused variable 'o8bind0' [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |              ^~~~~~~
o8comm.h:32:30: warning: unused variable 'o8bind' [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |                              ^~~~~~
o8comm.h:32:23: warning: unused variable 'alist' [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |                       ^~~~~
o8comm.h:32:15: warning: unused variable 'violis' [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |               ^~~~~~
o8comm.h:30:38: warning: unused variable 'matsc' [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                                      ^~~~~
o8comm.h:30:32: warning: unused variable 'diag0' [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                                ^~~~~
o8comm.h:30:24: warning: unused variable 'scalm2' [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                        ^~~~~~
o8comm.h:30:18: warning: unused variable 'scalm' [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                  ^~~~~
o8comm.h:30:16: warning: unused variable 'a' [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                ^
o8comm.h:26:14: warning: unused variable 'colle' [-Wunused-variable]
   26 |             *colle;
      |              ^~~~~
o8comm.h:25:14: warning: unused variable 'cscal' [-Wunused-variable]
   25 |             *cscal,
      |              ^~~~~
o8comm.h:24:27: warning: unused variable 'diag' [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                           ^~~~
o8comm.h:24:20: warning: unused variable 'betaq' [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                    ^~~~~
o8comm.h:24:16: warning: unused variable 'qr' [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                ^~
o8comm.h:23:34: warning: unused variable 'rank' [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                                  ^~~~
o8comm.h:23:28: warning: unused variable 'colno' [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                            ^~~~~
o8comm.h:23:21: warning: unused variable 'perm1' [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                     ^~~~~
o8comm.h:23:15: warning: unused variable 'perm' [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |               ^~~~
o8comm.h:21:21: warning: unused variable 'gresn' [-Wunused-variable]
   21 |             **gres,*gresn;
      |                     ^~~~~
o8comm.h:21:15: warning: unused variable 'gres' [-Wunused-variable]
   21 |             **gres,*gresn;
      |               ^~~~
o8comm.h:20:38: warning: unused variable 'gphi1' [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                                      ^~~~~
o8comm.h:20:31: warning: unused variable 'gphi0' [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                               ^~~~~
o8comm.h:20:26: warning: unused variable 'qgf' [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                          ^~~
o8comm.h:20:21: warning: unused variable 'gfn' [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                     ^~~
o8comm.h:20:15: warning: unused variable 'gradf' [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |               ^~~~~
o8comm.h:18:24: warning: unused variable 'resmin' [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |                        ^~~~~~
o8comm.h:18:18: warning: unused variable 'difx' [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |                  ^~~~
o8comm.h:18:14: warning: unused variable 'dd' [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |              ^~
o8comm.h:17:42: warning: unused variable 'd0' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                          ^~
o8comm.h:17:39: warning: unused variable 'd' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                       ^
o8comm.h:17:33: warning: unused variable 'xmin' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                 ^~~~
o8comm.h:17:29: warning: unused variable 'x1' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                             ^~
o8comm.h:17:25: warning: unused variable 'x0' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                         ^~
o8comm.h:17:15: warning: unused variable 'donlp2_x' [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |               ^~~~~~~~
o8comm.h:16:39: warning: unused variable 'upsim' [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                                       ^~~~~
o8comm.h:16:32: warning: unused variable 'cosphi' [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                                ^~~~~~
o8comm.h:16:25: warning: unused variable 'dirder' [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                         ^~~~~~
o8comm.h:16:18: warning: unused variable 'sigmin' [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                  ^~~~~~
o8comm.h:16:14: warning: unused variable 'sig' [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |              ^~~
o8comm.h:15:70: warning: unused variable 'd0norm' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                                      ^~~~~~
o8comm.h:15:63: warning: unused variable 'ddnorm' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                               ^~~~~~
o8comm.h:15:57: warning: unused variable 'dscal' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                         ^~~~~
o8comm.h:15:52: warning: unused variable 'sig0' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                    ^~~~
o8comm.h:15:45: warning: unused variable 'x0norm' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                             ^~~~~~
o8comm.h:15:39: warning: unused variable 'xnorm' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                       ^~~~~
o8comm.h:15:34: warning: unused variable 'b2n0' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                  ^~~~
o8comm.h:15:30: warning: unused variable 'b2n' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                              ^~~
o8comm.h:15:18: warning: unused variable 'donlp2_fmin' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                  ^~~~~~~~~~~
o8comm.h:15:13: warning: unused variable 'fxst' [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |             ^~~~
o8comm.h:14:41: warning: unused variable 'fx1' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                                         ^~~
o8comm.h:14:37: warning: unused variable 'fx0' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                                     ^~~
o8comm.h:14:34: warning: unused variable 'fx' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                                  ^~
o8comm.h:14:27: warning: unused variable 'phimin' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                           ^~~~~~
o8comm.h:14:22: warning: unused variable 'phi1' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                      ^~~~
o8comm.h:14:17: warning: unused variable 'phi0' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                 ^~~~
o8comm.h:14:13: warning: unused variable 'phi' [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |             ^~~
o8comm.h:13:24: warning: unused variable 'psimin' [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |                        ^~~~~~
o8comm.h:13:18: warning: unused variable 'psist' [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |                  ^~~~~
o8comm.h:13:13: warning: unused variable 'psi1' [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |             ^~~~
o8comm.h:12:42: warning: unused variable 'psi0' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                                          ^~~~
o8comm.h:12:38: warning: unused variable 'psi' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                                      ^~~
o8comm.h:12:31: warning: unused variable 'upsist' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                               ^~~~~~
o8comm.h:12:25: warning: unused variable 'upsi1' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                         ^~~~~
o8comm.h:12:19: warning: unused variable 'upsi0' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                   ^~~~~
o8comm.h:12:14: warning: unused variable 'upsi' [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |              ^~~~
o8comm.h:10:21: warning: unused variable 'phase' [-Wunused-variable]
   10 | X IINTEGER   itstep,phase;
      |                     ^~~~~
o8comm.h:10:14: warning: unused variable 'itstep' [-Wunused-variable]
   10 | X IINTEGER   itstep,phase;
      |              ^~~~~~
o8comm.h:9:16: warning: unused variable 'accinf' [-Wunused-variable]
    9 | X DDOUBLE    **accinf;
      |                ^~~~~~
o8comm.h:8:14: warning: unused variable 'optite' [-Wunused-variable]
    8 | X RREAL      optite;
      |              ^~~~~~
o8comm.h:7:14: warning: unused variable 'runtim' [-Wunused-variable]
    7 | X RREAL      runtim;
      |              ^~~~~~
In file included from o8comm.h:5:
o8fuco.h:33:13: warning: unused variable 'cfuerr' [-Wunused-variable]
   33 | X LLOGICAL *cfuerr;
      |             ^~~~~~
o8fuco.h:31:13: warning: unused variable 'gconst' [-Wunused-variable]
   31 | X LLOGICAL *gconst;
      |             ^~~~~~
o8fuco.h:29:14: warning: unused variable 'gunit' [-Wunused-variable]
   29 | X IINTEGER **gunit;
      |              ^~~~~
o8fuco.h:27:13: warning: unused variable 'nonlinlist' [-Wunused-variable]
   27 | X IINTEGER *nonlinlist;
      |             ^~~~~~~~~~
o8fuco.h:25:15: warning: unused variable 'ng' [-Wunused-variable]
   25 | X IINTEGER nh,ng;
      |               ^~
o8fuco.h:25:12: warning: unused variable 'nh' [-Wunused-variable]
   25 | X IINTEGER nh,ng;
      |            ^~
o8fuco.h:20:22: warning: unused variable 'confuerr' [-Wunused-variable]
   20 | X LLOGICAL   ffuerr,*confuerr;
      |                      ^~~~~~~~
o8fuco.h:20:14: warning: unused variable 'ffuerr' [-Wunused-variable]
   20 | X LLOGICAL   ffuerr,*confuerr;
      |              ^~~~~~
o8fuco.h:18:37: warning: unused variable 'cgres' [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                                     ^~~~~
o8fuco.h:18:31: warning: unused variable 'cres' [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                               ^~~~
o8fuco.h:18:23: warning: unused variable 'cfincr' [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                       ^~~~~~
o8fuco.h:18:18: warning: unused variable 'icgf' [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                  ^~~~
o8fuco.h:18:14: warning: unused variable 'icf' [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |              ^~~
o8fuco.h:16:40: warning: unused variable 'cold' [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                                        ^~~~
o8fuco.h:16:26: warning: unused variable 'silent' [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                          ^~~~~~
o8fuco.h:16:20: warning: unused variable 'eqres' [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                    ^~~~~
o8fuco.h:16:14: warning: unused variable 'ident' [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |              ^~~~~
o8fuco.h:15:37: warning: unused variable 'singul' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                                     ^~~~~~
o8fuco.h:15:33: warning: unused variable 'te3' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                                 ^~~
o8fuco.h:15:29: warning: unused variable 'te2' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                             ^~~
o8fuco.h:15:25: warning: unused variable 'te1' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                         ^~~
o8fuco.h:15:21: warning: unused variable 'te0' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                     ^~~
o8fuco.h:15:14: warning: unused variable 'intakt' [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |              ^~~~~~
o8fuco.h:13:14: warning: unused variable 'epsdif' [-Wunused-variable]
   13 | X DDOUBLE    epsdif;
      |              ^~~~~~
o8fuco.h:11:13: warning: unused variable 'name' [-Wunused-variable]
   11 | X char      name[41];
      |             ^~~~
o8fuco.h:9:21: warning: unused variable 'tolmac' [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |                     ^~~~~~
o8fuco.h:9:14: warning: unused variable 'epsmac' [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |              ^~~~~~
o8fuco.h:7:52: warning: unused variable 'mdualm' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                                    ^~~~~~
o8fuco.h:7:44: warning: unused variable 'ndualm' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                            ^~~~~~
o8fuco.h:7:37: warning: unused variable 'nstep' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                     ^~~~~
o8fuco.h:7:19: warning: unused variable 'nres' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                   ^~~~
o8fuco.h:7:16: warning: unused variable 'nr' [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                ^~
o8fuco.h:5:26: warning: unused variable 'lup' [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |                          ^~~
o8fuco.h:5:20: warning: unused variable 'llow' [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |                    ^~~~
o8fuco.h:5:15: warning: unused variable 'val' [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |               ^~~
gcc -shared -s -static-libgcc -o puma.dll tmp.def PMmultimgmos.o cregistration.o donlp2.o gme.o ipplr_c.o multimgmos.o newx.o pplr_c.o pumaclust_c.o pumaclustii_c.o user_eval.o -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.18-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.18-bioc/R/library/00LOCK-puma/00new/puma/libs/x64
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (puma)

Tests output


Example timings

puma.Rcheck/puma-Ex.timings

nameusersystemelapsed
DEResult-class0.020.000.02
PMmmgmos000
bcomb000
calcAUC000
calculateFC000
calculateLimma000
calculateTtest000
clusterNormE000
clusterNormVar000
createContrastMatrix0.010.000.01
createDesignMatrix0.030.000.03
erfc000
exprReslt-class000
gmhta000
gmoExon000
hcomb000
igmoExon000
legend2000
license.puma0.020.000.02
matrixDistance000
mgmos000
mmgmos000
normalisation.gs000
numFP000
numOfFactorsToUse000
numTP000
orig_pplr000
plot-methods5.480.395.87
plotErrorBars0.250.000.25
plotHistTwoClasses0.010.000.01
plotROC000
pplr0.100.010.11
puma-package36.28 0.4336.71
pumaClustii2.590.062.66
pumaComb13.46 0.0013.45
pumaCombImproved8.070.008.08
pumaDE21.27 0.0121.28
pumaFull000
pumaNormalize0.260.000.27
pumaPCA4.540.224.75
pumaclust6.260.006.26
removeUninformativeFactors0.030.000.03