Build/check report for BioC 3.18 - BUILD results for pkgDepTools on nebbiolo2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 20.04.5 LTS)	x86_64	R Under development (unstable) (2023-04-19 r84288) -- "Unsuffered Consequences"	3941
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

To the developers/maintainers of the pkgDepTools package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/pkgDepTools.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

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### Running command:
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###   /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data pkgDepTools
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* checking for file ‘pkgDepTools/DESCRIPTION’ ... OK
* preparing ‘pkgDepTools’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘pkgDepTools.Rnw’ using Sweave
Loading required package: graph
Loading required package: BiocGenerics

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm,
    append, as.data.frame, basename, cbind, colnames, dirname,
    do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, mapply, match, mget, order,
    paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
    rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit, which.max, which.min

Loading required package: RBGL
Warning: Package 'pkgDepTools' is deprecated and will be removed from
  Bioconductor version 3.18
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages
    'citation("pkgname")'.

Loading required package: grid
Bioconductor does not yet build and check packages for R version 4.4;
  see https://bioconductor.org/install

Error: processing vignette 'pkgDepTools.Rnw' failed with diagnostics:
 chunk 3 (label = testMakeDepGraph0) 
Error : Bioconductor does not yet build and check packages for R version 4.4;
  see https://bioconductor.org/install

--- failed re-building ‘pkgDepTools.Rnw’

SUMMARY: processing the following file failed:
  ‘pkgDepTools.Rnw’

Error: Vignette re-building failed.
Execution halted

BUILD results for pkgDepTools on nebbiolo2

Summary

Command output