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This page was generated on 2024-04-17 11:37:03 -0400 (Wed, 17 Apr 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4676
palomino4Windows Server 2022 Datacenterx644.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" 4414
merida1macOS 12.7.1 Montereyx86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4437
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1407/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
netresponse 1.62.0  (landing page)
Leo Lahti
Snapshot Date: 2024-04-15 14:05:01 -0400 (Mon, 15 Apr 2024)
git_url: https://git.bioconductor.org/packages/netresponse
git_branch: RELEASE_3_18
git_last_commit: b3dff34
git_last_commit_date: 2023-10-24 09:44:54 -0400 (Tue, 24 Oct 2023)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    ERROR  
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.1 Ventura / arm64see weekly results here

BUILD BIN results for netresponse on palomino4


To the developers/maintainers of the netresponse package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/netresponse.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: netresponse
Version: 1.62.0
Command: rm -rf netresponse.buildbin-libdir && mkdir netresponse.buildbin-libdir && F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD INSTALL --build --library=netresponse.buildbin-libdir netresponse_1.62.0.tar.gz
StartedAt: 2024-04-16 07:22:10 -0400 (Tue, 16 Apr 2024)
EndedAt: 2024-04-16 07:22:33 -0400 (Tue, 16 Apr 2024)
EllapsedTime: 23.3 seconds
RetCode: 0
Status:   OK  
PackageFile: netresponse_1.62.0.zip
PackageFileSize: 1.296 MiB

Command output

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###
### Running command:
###
###   rm -rf netresponse.buildbin-libdir && mkdir netresponse.buildbin-libdir && F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD INSTALL --build --library=netresponse.buildbin-libdir netresponse_1.62.0.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'netresponse' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 12.3.0'
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG     -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c netresponse.c -o netresponse.o
netresponse.c: In function 'mHPpost':
netresponse.c:264:15: warning: unused variable 'prior_fields' [-Wunused-variable]
  264 |   const char *prior_fields[]={"Mumu","S2mu",
      |               ^~~~~~~~~~~~
netresponse.c: In function 'mLogLambda':
netresponse.c:713:3: warning: 'U_p' may be used uninitialized [-Wmaybe-uninitialized]
  713 |   vdp_mk_log_lambda(Mumu, S2mu, Mubar, Mutilde,
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  714 |                     AlphaKsi, BetaKsi, KsiAlpha, KsiBeta,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  715 |                     post_gamma, log_lambda, prior_alpha,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  716 |                     U_p, U_hat,
      |                     ~~~~~~~~~~~
  717 |                     datalen, dim1, dim2, data1, data2,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  718 |                     Ns, ncentroids, implicitnoisevar);
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
netresponse.c:656:48: note: 'U_p' was declared here
  656 |     *AlphaKsi, *BetaKsi, *KsiAlpha, *KsiBeta, *U_p, *prior_alpha,
      |                                                ^~~
netresponse.c:713:3: warning: 'KsiBeta' may be used uninitialized [-Wmaybe-uninitialized]
  713 |   vdp_mk_log_lambda(Mumu, S2mu, Mubar, Mutilde,
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  714 |                     AlphaKsi, BetaKsi, KsiAlpha, KsiBeta,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  715 |                     post_gamma, log_lambda, prior_alpha,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  716 |                     U_p, U_hat,
      |                     ~~~~~~~~~~~
  717 |                     datalen, dim1, dim2, data1, data2,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  718 |                     Ns, ncentroids, implicitnoisevar);
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
netresponse.c:656:38: note: 'KsiBeta' was declared here
  656 |     *AlphaKsi, *BetaKsi, *KsiAlpha, *KsiBeta, *U_p, *prior_alpha,
      |                                      ^~~~~~~
netresponse.c:713:3: warning: 'KsiAlpha' may be used uninitialized [-Wmaybe-uninitialized]
  713 |   vdp_mk_log_lambda(Mumu, S2mu, Mubar, Mutilde,
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  714 |                     AlphaKsi, BetaKsi, KsiAlpha, KsiBeta,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  715 |                     post_gamma, log_lambda, prior_alpha,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  716 |                     U_p, U_hat,
      |                     ~~~~~~~~~~~
  717 |                     datalen, dim1, dim2, data1, data2,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  718 |                     Ns, ncentroids, implicitnoisevar);
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
netresponse.c:656:27: note: 'KsiAlpha' was declared here
  656 |     *AlphaKsi, *BetaKsi, *KsiAlpha, *KsiBeta, *U_p, *prior_alpha,
      |                           ^~~~~~~~
netresponse.c:713:3: warning: 'BetaKsi' may be used uninitialized [-Wmaybe-uninitialized]
  713 |   vdp_mk_log_lambda(Mumu, S2mu, Mubar, Mutilde,
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  714 |                     AlphaKsi, BetaKsi, KsiAlpha, KsiBeta,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  715 |                     post_gamma, log_lambda, prior_alpha,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  716 |                     U_p, U_hat,
      |                     ~~~~~~~~~~~
  717 |                     datalen, dim1, dim2, data1, data2,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  718 |                     Ns, ncentroids, implicitnoisevar);
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
netresponse.c:656:17: note: 'BetaKsi' was declared here
  656 |     *AlphaKsi, *BetaKsi, *KsiAlpha, *KsiBeta, *U_p, *prior_alpha,
      |                 ^~~~~~~
netresponse.c:713:3: warning: 'AlphaKsi' may be used uninitialized [-Wmaybe-uninitialized]
  713 |   vdp_mk_log_lambda(Mumu, S2mu, Mubar, Mutilde,
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  714 |                     AlphaKsi, BetaKsi, KsiAlpha, KsiBeta,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  715 |                     post_gamma, log_lambda, prior_alpha,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  716 |                     U_p, U_hat,
      |                     ~~~~~~~~~~~
  717 |                     datalen, dim1, dim2, data1, data2,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  718 |                     Ns, ncentroids, implicitnoisevar);
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
netresponse.c:656:6: note: 'AlphaKsi' was declared here
  656 |     *AlphaKsi, *BetaKsi, *KsiAlpha, *KsiBeta, *U_p, *prior_alpha,
      |      ^~~~~~~~
netresponse.c:713:3: warning: 'Mutilde' may be used uninitialized [-Wmaybe-uninitialized]
  713 |   vdp_mk_log_lambda(Mumu, S2mu, Mubar, Mutilde,
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  714 |                     AlphaKsi, BetaKsi, KsiAlpha, KsiBeta,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  715 |                     post_gamma, log_lambda, prior_alpha,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  716 |                     U_p, U_hat,
      |                     ~~~~~~~~~~~
  717 |                     datalen, dim1, dim2, data1, data2,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  718 |                     Ns, ncentroids, implicitnoisevar);
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
netresponse.c:655:33: note: 'Mutilde' was declared here
  655 |   double *Mumu, *S2mu, *Mubar, *Mutilde,
      |                                 ^~~~~~~
netresponse.c:713:3: warning: 'Mubar' may be used uninitialized [-Wmaybe-uninitialized]
  713 |   vdp_mk_log_lambda(Mumu, S2mu, Mubar, Mutilde,
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  714 |                     AlphaKsi, BetaKsi, KsiAlpha, KsiBeta,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  715 |                     post_gamma, log_lambda, prior_alpha,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  716 |                     U_p, U_hat,
      |                     ~~~~~~~~~~~
  717 |                     datalen, dim1, dim2, data1, data2,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  718 |                     Ns, ncentroids, implicitnoisevar);
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
netresponse.c:655:25: note: 'Mubar' was declared here
  655 |   double *Mumu, *S2mu, *Mubar, *Mutilde,
      |                         ^~~~~
netresponse.c:713:3: warning: 'S2mu' may be used uninitialized [-Wmaybe-uninitialized]
  713 |   vdp_mk_log_lambda(Mumu, S2mu, Mubar, Mutilde,
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  714 |                     AlphaKsi, BetaKsi, KsiAlpha, KsiBeta,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  715 |                     post_gamma, log_lambda, prior_alpha,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  716 |                     U_p, U_hat,
      |                     ~~~~~~~~~~~
  717 |                     datalen, dim1, dim2, data1, data2,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  718 |                     Ns, ncentroids, implicitnoisevar);
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
netresponse.c:655:18: note: 'S2mu' was declared here
  655 |   double *Mumu, *S2mu, *Mubar, *Mutilde,
      |                  ^~~~
netresponse.c:713:3: warning: 'Mumu' may be used uninitialized [-Wmaybe-uninitialized]
  713 |   vdp_mk_log_lambda(Mumu, S2mu, Mubar, Mutilde,
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  714 |                     AlphaKsi, BetaKsi, KsiAlpha, KsiBeta,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  715 |                     post_gamma, log_lambda, prior_alpha,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  716 |                     U_p, U_hat,
      |                     ~~~~~~~~~~~
  717 |                     datalen, dim1, dim2, data1, data2,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  718 |                     Ns, ncentroids, implicitnoisevar);
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
netresponse.c:655:11: note: 'Mumu' was declared here
  655 |   double *Mumu, *S2mu, *Mubar, *Mutilde,
      |           ^~~~
gcc -shared -s -static-libgcc -o netresponse.dll tmp.def netresponse.o -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.18-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.18-bioc/meat/netresponse.buildbin-libdir/00LOCK-netresponse/00new/netresponse/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'netresponse' as netresponse_1.62.0.zip
* DONE (netresponse)