Pierrick Roger
| Snapshot Date: 2024-03-27 14:05:05 -0400 (Wed, 27 Mar 2024) |
| git_url: https://git.bioconductor.org/packages/biodbHmdb |
| git_branch: RELEASE_3_18 |
| git_last_commit: 0efcfbf |
| git_last_commit_date: 2023-10-24 11:38:18 -0400 (Tue, 24 Oct 2023) |
| Back to Multiple platform build/check report for BioC 3.18: simplified long |
|
This page was generated on 2024-03-29 11:36:34 -0400 (Fri, 29 Mar 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4669 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" | 4404 |
| merida1 | macOS 12.7.1 Monterey | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4427 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 198/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biodbHmdb 1.8.0 (landing page) Pierrick Roger
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the biodbHmdb package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: biodbHmdb |
| Version: 1.8.0 |
| Command: F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbHmdb.install-out.txt --library=F:\biocbuild\bbs-3.18-bioc\R\library --no-vignettes --timings biodbHmdb_1.8.0.tar.gz |
| StartedAt: 2024-03-27 22:48:38 -0400 (Wed, 27 Mar 2024) |
| EndedAt: 2024-03-27 22:51:28 -0400 (Wed, 27 Mar 2024) |
| EllapsedTime: 169.3 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: biodbHmdb.Rcheck |
| Warnings: 2 |
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###
### Running command:
###
### F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbHmdb.install-out.txt --library=F:\biocbuild\bbs-3.18-bioc\R\library --no-vignettes --timings biodbHmdb_1.8.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'F:/biocbuild/bbs-3.18-bioc/meat/biodbHmdb.Rcheck'
* using R version 4.3.3 (2024-02-29 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
gcc.exe (GCC) 12.3.0
GNU Fortran (GCC) 12.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'biodbHmdb/DESCRIPTION' ... OK
* this is package 'biodbHmdb' version '1.8.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbHmdb' can be installed ... WARNING
Found the following significant warnings:
EntryMaker.hpp:23:21: warning: 'EntryMaker::accession_tag' will be initialized after [-Wreorder]
EntryMaker.hpp:22:14: warning: 'bool EntryMaker::closed' [-Wreorder]
EntryMaker.cpp:5:1: warning: when initialized here [-Wreorder]
See 'F:/biocbuild/bbs-3.18-bioc/meat/biodbHmdb.Rcheck/00install.out' for details.
* used C++ compiler: 'G__~1.EXE (GCC) 12.3.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: 'zip'
All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
'HmdbMetabolitesConn' 'HmdbMetabolitesEntry' 'hmdbToSqlite'
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
File 'F:/biocbuild/bbs-3.18-bioc/R/library/biodbHmdb/libs/x64/biodbHmdb.dll':
Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.
See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ... NONE
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 WARNINGs, 2 NOTEs
See
'F:/biocbuild/bbs-3.18-bioc/meat/biodbHmdb.Rcheck/00check.log'
for details.
biodbHmdb.Rcheck/00install.out
##############################################################################
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###
### Running command:
###
### F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################
* installing to library 'F:/biocbuild/bbs-3.18-bioc/R/library'
* installing *source* package 'biodbHmdb' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 12.3.0'
g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.18-bioc/R/library/testthat/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c EntryMaker.cpp -o EntryMaker.o
In file included from EntryMaker.cpp:1:
EntryMaker.hpp: In constructor 'EntryMaker::EntryMaker()':
EntryMaker.hpp:23:21: warning: 'EntryMaker::accession_tag' will be initialized after [-Wreorder]
23 | TagDetector accession_tag;
| ^~~~~~~~~~~~~
EntryMaker.hpp:22:14: warning: 'bool EntryMaker::closed' [-Wreorder]
22 | bool closed;
| ^~~~~~
EntryMaker.cpp:5:1: warning: when initialized here [-Wreorder]
5 | EntryMaker::EntryMaker() :
| ^~~~~~~~~~
g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.18-bioc/R/library/testthat/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c FileEntryMaker.cpp -o FileEntryMaker.o
g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.18-bioc/R/library/testthat/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.18-bioc/R/library/testthat/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.18-bioc/R/library/testthat/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c TagDetector.cpp -o TagDetector.o
g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.18-bioc/R/library/testthat/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c XmlSplitter.cpp -o XmlSplitter.o
g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.18-bioc/R/library/testthat/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c extractXmlEntries.cpp -o extractXmlEntries.o
g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.18-bioc/R/library/testthat/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c test-100-TagDetector.cpp -o test-100-TagDetector.o
g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.18-bioc/R/library/testthat/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.18-bioc/R/library/testthat/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.18-bioc/R/library/testthat/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c test-runner.cpp -o test-runner.o
g++ -std=gnu++17 -shared -s -static-libgcc -o biodbHmdb.dll tmp.def EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.18-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.18-bioc/R/library/00LOCK-biodbHmdb/00new/biodbHmdb/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package 'biodbHmdb'
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)
biodbHmdb.Rcheck/tests/testthat.Rout
R version 4.3.3 (2024-02-29 ucrt) -- "Angel Food Cake"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2024-03-27 22:49:50.284][biodb::testContext]
biodb.INFO [2024-03-27 22:49:50.289][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-27 22:49:50.291][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2024-03-27 22:49:50.293][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-27 22:49:50.296][biodb::testContext]
biodb.INFO [2024-03-27 22:49:50.299][biodb::testThat]
biodb.INFO [2024-03-27 22:49:50.301][biodb::testThat] Running test function test_extractXmlEntries (" extractXmlEntries() works fine. ").
biodb.INFO [2024-03-27 22:49:50.303][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-27 22:49:50.305][biodb::testThat]
biodb.INFO [2024-03-27 22:49:50.468][biodb::testContext]
biodb.INFO [2024-03-27 22:49:50.470][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-27 22:49:50.472][biodb::testContext] Test context - Generic tests
biodb.INFO [2024-03-27 22:49:50.475][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-27 22:49:50.477][biodb::testContext]
biodb.INFO [2024-03-27 22:49:50.493][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.10.0.
biodb.DEBUG[2024-03-27 22:49:50.497][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.18-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-03-27 22:49:50.509][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-27 22:49:50.512][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-03-27 22:49:50.514][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-03-27 22:49:50.516][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:50.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:50.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:50.521][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-03-27 22:49:50.549][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-03-27 22:49:50.552][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:50.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:50.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:50.558][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-03-27 22:49:50.560][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-03-27 22:49:50.562][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:50.563][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:50.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:50.567][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-03-27 22:49:50.569][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-03-27 22:49:50.571][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-03-27 22:49:50.573][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:50.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:50.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:50.578][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-03-27 22:49:50.580][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-03-27 22:49:50.582][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-03-27 22:49:50.584][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:50.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:50.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:50.589][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-03-27 22:49:50.591][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-03-27 22:49:50.593][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:50.594][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:50.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:50.598][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-03-27 22:49:50.600][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-03-27 22:49:50.602][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-03-27 22:49:50.603][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:50.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:50.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:50.609][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-03-27 22:49:50.611][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-03-27 22:49:50.612][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:50.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:50.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:50.618][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-03-27 22:49:50.619][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-03-27 22:49:50.621][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-03-27 22:49:50.623][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:50.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:50.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:50.628][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-03-27 22:49:50.630][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-03-27 22:49:50.632][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-03-27 22:49:50.634][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-03-27 22:49:50.636][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-03-27 22:49:50.638][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-03-27 22:49:50.640][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:50.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:50.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:50.645][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-03-27 22:49:50.647][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-03-27 22:49:50.649][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:50.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:50.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:50.654][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-03-27 22:49:50.656][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-03-27 22:49:50.658][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:50.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:50.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:50.663][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-03-27 22:49:50.665][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-03-27 22:49:50.667][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:50.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:50.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:50.672][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-03-27 22:49:50.674][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-03-27 22:49:50.676][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:50.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:50.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:50.681][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-03-27 22:49:50.683][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-03-27 22:49:50.684][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:50.686][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:50.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:50.690][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-03-27 22:49:50.692][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-03-27 22:49:50.698][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-03-27 22:49:50.699][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:50.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:50.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:50.705][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-03-27 22:49:50.707][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-03-27 22:49:50.709][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-03-27 22:49:50.711][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:50.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:50.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:50.719][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-03-27 22:49:50.768][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-27 22:49:50.788][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-03-27 22:49:50.790][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-27 22:49:50.791][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-27 22:49:50.792][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-27 22:49:50.793][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-27 22:49:50.795][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-27 22:49:50.796][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-27 22:49:50.798][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-03-27 22:49:50.800][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-27 22:49:50.802][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-27 22:49:50.804][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-03-27 22:49:50.806][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-27 22:49:50.808][self$setPropertyValue]
biodb.DEBUG[2024-03-27 22:49:50.810][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-27 22:49:50.812][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-27 22:49:50.812][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-27 22:49:50.812][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-27 22:49:50.812][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-03-27 22:49:50.812][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-03-27 22:49:50.814][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-27 22:49:50.816][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 22:49:50.817][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 22:49:50.819][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-27 22:49:50.821][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 22:49:50.822][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 22:49:50.824][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-27 22:49:50.825][self$setPropertyValue]
biodb.DEBUG[2024-03-27 22:49:50.826][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-27 22:49:50.827][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-27 22:49:50.828][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-27 22:49:50.830][self$setPropertyValue]
biodb.DEBUG[2024-03-27 22:49:50.831][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-03-27 22:49:50.833][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-27 22:49:50.834][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-03-27 22:49:50.835][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-27 22:49:50.837][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-27 22:49:50.838][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-27 22:49:50.839][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-27 22:49:50.840][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-27 22:49:50.842][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-27 22:49:50.843][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-03-27 22:49:50.844][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-27 22:49:50.845][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-27 22:49:50.846][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-03-27 22:49:50.848][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-27 22:49:50.849][self$setPropertyValue]
biodb.DEBUG[2024-03-27 22:49:50.850][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-27 22:49:50.851][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-27 22:49:50.851][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-27 22:49:50.851][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-27 22:49:50.851][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-03-27 22:49:50.851][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-03-27 22:49:50.853][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-27 22:49:50.854][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 22:49:50.855][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 22:49:50.856][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-27 22:49:50.857][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 22:49:50.858][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 22:49:50.860][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-27 22:49:50.861][self$setPropertyValue]
biodb.DEBUG[2024-03-27 22:49:50.862][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-27 22:49:50.863][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-27 22:49:50.864][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-27 22:49:50.865][self$setPropertyValue]
biodb.DEBUG[2024-03-27 22:49:50.867][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-03-27 22:49:50.869][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-27 22:49:50.870][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-03-27 22:49:50.871][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-27 22:49:50.873][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-27 22:49:50.874][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-27 22:49:50.875][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-27 22:49:50.876][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-27 22:49:50.877][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-27 22:49:50.879][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-03-27 22:49:50.880][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-27 22:49:50.882][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-03-27 22:49:50.884][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-03-27 22:49:50.886][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-27 22:49:50.888][self$setPropertyValue]
biodb.DEBUG[2024-03-27 22:49:50.890][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-27 22:49:50.892][self$setPropertyValue]
biodb.DEBUG[2024-03-27 22:49:50.894][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-27 22:49:50.896][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 22:49:50.898][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 22:49:50.900][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-27 22:49:50.902][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 22:49:50.903][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 22:49:50.905][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-27 22:49:50.906][self$setPropertyValue]
biodb.DEBUG[2024-03-27 22:49:50.908][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-27 22:49:50.909][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-27 22:49:50.910][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-27 22:49:50.911][self$setPropertyValue]
biodb.DEBUG[2024-03-27 22:49:50.913][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-03-27 22:49:50.915][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-27 22:49:50.916][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-03-27 22:49:50.917][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-27 22:49:50.919][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-27 22:49:50.920][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-27 22:49:50.922][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-27 22:49:50.924][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-27 22:49:50.926][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-27 22:49:50.928][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-03-27 22:49:50.930][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-27 22:49:50.932][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-03-27 22:49:50.934][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-03-27 22:49:50.936][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-27 22:49:50.938][self$setPropertyValue]
biodb.DEBUG[2024-03-27 22:49:50.940][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-27 22:49:50.942][self$setPropertyValue]
biodb.DEBUG[2024-03-27 22:49:50.944][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-27 22:49:50.946][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 22:49:50.948][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 22:49:50.950][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-27 22:49:50.952][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 22:49:50.954][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 22:49:50.956][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-27 22:49:50.958][self$setPropertyValue]
biodb.DEBUG[2024-03-27 22:49:50.960][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-27 22:49:50.962][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-27 22:49:50.964][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-27 22:49:50.966][self$setPropertyValue]
biodb.DEBUG[2024-03-27 22:49:50.972][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-27 22:49:50.974][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:50.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:50.978][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:50.980][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:49:50.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:49:50.984][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:50.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:50.987][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:50.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:49:50.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:49:50.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:50.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:50.997][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:50.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:49:51.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:49:51.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:51.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:51.006][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:51.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:49:51.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:49:51.011][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:51.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:51.015][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:51.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:49:51.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:49:51.020][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:51.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:51.024][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:51.026][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:49:51.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:49:51.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:51.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:51.032][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:51.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:49:51.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:49:51.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:51.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:51.041][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:51.043][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:49:51.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:49:51.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:51.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:51.050][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:51.052][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:49:51.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:49:51.055][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:51.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:51.059][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:51.061][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:49:51.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:49:51.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:51.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:51.068][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:51.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:49:51.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:49:51.073][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:51.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:51.077][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:51.078][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:49:51.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:49:51.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:51.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:51.085][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:51.087][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:49:51.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:49:51.091][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:51.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:51.095][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:51.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:49:51.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:49:51.100][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:51.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:51.111][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:51.113][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:49:51.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:49:51.116][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:51.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:51.120][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:51.121][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:49:51.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:49:51.125][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:51.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:51.128][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:51.130][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:49:51.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:49:51.134][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:51.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:51.137][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-03-27 22:49:51.145][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-03-27 22:49:51.148][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-03-27 22:49:51.150][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-03-27 22:49:51.153][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-03-27 22:49:51.156][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-03-27 22:49:51.159][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-03-27 22:49:51.161][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-03-27 22:49:51.164][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-03-27 22:49:51.167][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-03-27 22:49:51.169][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-03-27 22:49:51.172][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-03-27 22:49:51.175][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-03-27 22:49:51.178][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-03-27 22:49:51.180][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-03-27 22:49:51.183][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-03-27 22:49:51.185][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-03-27 22:49:51.188][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-03-27 22:49:51.191][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-03-27 22:49:51.193][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-03-27 22:49:51.196][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-03-27 22:49:51.199][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-03-27 22:49:51.201][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-03-27 22:49:51.204][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-03-27 22:49:51.207][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-03-27 22:49:51.210][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-03-27 22:49:51.212][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-03-27 22:49:51.215][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-03-27 22:49:51.217][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-03-27 22:49:51.220][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-03-27 22:49:51.222][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-03-27 22:49:51.225][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-03-27 22:49:51.228][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-03-27 22:49:51.230][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-03-27 22:49:51.233][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-03-27 22:49:51.236][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-03-27 22:49:51.239][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-03-27 22:49:51.241][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-03-27 22:49:51.244][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-03-27 22:49:51.246][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-03-27 22:49:51.249][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-03-27 22:49:51.252][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-03-27 22:49:51.254][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-03-27 22:49:51.257][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-03-27 22:49:51.260][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-03-27 22:49:51.262][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-03-27 22:49:51.265][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-03-27 22:49:51.268][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-03-27 22:49:51.271][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-03-27 22:49:51.273][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-03-27 22:49:51.276][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-03-27 22:49:51.279][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-03-27 22:49:51.281][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-03-27 22:49:51.284][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-03-27 22:49:51.286][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-03-27 22:49:51.289][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-03-27 22:49:51.292][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-03-27 22:49:51.294][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-03-27 22:49:51.297][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-03-27 22:49:51.299][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-03-27 22:49:51.302][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-03-27 22:49:51.305][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-03-27 22:49:51.307][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-03-27 22:49:51.310][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-03-27 22:49:51.313][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-03-27 22:49:51.315][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-03-27 22:49:51.318][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-03-27 22:49:51.321][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-03-27 22:49:51.323][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-03-27 22:49:51.326][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-03-27 22:49:51.328][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-03-27 22:49:51.330][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-03-27 22:49:51.331][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-03-27 22:49:51.333][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-03-27 22:49:51.334][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-03-27 22:49:51.337][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-03-27 22:49:51.339][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-03-27 22:49:51.342][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-03-27 22:49:51.344][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-03-27 22:49:51.347][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-03-27 22:49:51.350][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-03-27 22:49:51.352][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-03-27 22:49:51.355][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-03-27 22:49:51.401][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-03-27 22:49:51.405][initialize] This is biodb version 1.10.0.
biodb.DEBUG[2024-03-27 22:49:51.410][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-27 22:49:51.412][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:49:51.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:49:51.416][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:51.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:51.426][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:51.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:49:51.431][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:49:51.432][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:49:51.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:49:51.436][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:51.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:51.440][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:51.442][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:49:51.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:49:51.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:49:51.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:49:51.449][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:51.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:51.453][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:51.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:49:51.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:49:51.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:49:51.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:49:51.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:51.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:51.466][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:51.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:49:51.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:49:51.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:49:51.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:49:51.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:51.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:51.478][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:51.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:49:51.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:49:51.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:49:51.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:49:51.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:51.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:51.491][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:51.493][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:49:51.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:49:51.496][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:49:51.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:49:51.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:51.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:51.504][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:51.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:49:51.507][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:49:51.509][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:49:51.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:49:51.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:51.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:51.516][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:51.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:49:51.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:49:51.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:49:51.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:49:51.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:51.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:51.533][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:51.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:49:51.535][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:49:51.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:49:51.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:49:51.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:51.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:51.541][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:51.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:49:51.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:49:51.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:49:51.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:49:51.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:51.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:51.551][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:51.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:49:51.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:49:51.556][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:49:51.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:49:51.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:51.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:51.563][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:51.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:49:51.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:49:51.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:49:51.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:49:51.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:51.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:51.575][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:51.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:49:51.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:49:51.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:49:51.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:49:51.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:51.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:51.588][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:51.590][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:49:51.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:49:51.594][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:49:51.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:49:51.597][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:51.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:51.601][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:51.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:49:51.604][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:49:51.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:49:51.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:49:51.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:51.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:51.614][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:51.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:49:51.617][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:49:51.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:49:51.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:49:51.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:51.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:51.626][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:49:51.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:49:51.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:49:51.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:49:51.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:49:51.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:51.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:49:51.642][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.18-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-03-27 22:49:51.658][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-03-27 22:49:51.662][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-27 22:49:51.664][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-03-27 22:49:51.667][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-27 22:49:51.669][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-27 22:49:51.671][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-03-27 22:49:51.673][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-03-27 22:49:51.676][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-03-27 22:49:51.678][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-27 22:49:51.680][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-03-27 22:49:51.682][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-27 22:49:51.684][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-27 22:49:51.686][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-03-27 22:49:51.689][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-27 22:49:51.691][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-03-27 22:49:51.691][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-03-27 22:49:51.691][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-03-27 22:49:51.691][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-03-27 22:49:51.691][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-03-27 22:49:51.691][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-03-27 22:49:51.691][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-03-27 22:49:51.691][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-03-27 22:49:51.691][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-03-27 22:49:51.691][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-03-27 22:49:51.691][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-03-27 22:49:51.691][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-03-27 22:49:51.691][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-03-27 22:49:51.691][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-03-27 22:49:51.691][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-03-27 22:49:51.691][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-03-27 22:49:51.691][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-03-27 22:49:51.691][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-03-27 22:49:51.693][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-03-27 22:49:51.695][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-27 22:49:51.695][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-03-27 22:49:51.695][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-03-27 22:49:51.697][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-03-27 22:49:51.699][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 22:49:51.701][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 22:49:51.703][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-27 22:49:51.705][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 22:49:51.707][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 22:49:51.709][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-27 22:49:51.711][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-03-27 22:49:51.711][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-03-27 22:49:51.713][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-27 22:49:51.715][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-27 22:49:51.717][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-03-27 22:49:51.719][self$setPropertyValue]
biodb.DEBUG[2024-03-27 22:49:51.728][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-03-27 22:49:51.731][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-03-27 22:49:51.734][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-03-27 22:49:51.738][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-03-27 22:49:51.741][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-03-27 22:49:51.776][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-03-27 22:49:51.779][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-03-27 22:49:51.785][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-03-27 22:49:51.792][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-03-27 22:49:51.799][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-27 22:49:51.801][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-27 22:49:51.804][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-03-27 22:49:51.806][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-03-27 22:49:51.808][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-03-27 22:49:51.808][self$setPropertyValue] Setting property "urls" to "F:/biocbuild/bbs-3.18-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-03-27 22:49:51.810][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-27 22:49:51.812][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-27 22:49:51.814][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-03-27 22:49:51.816][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-03-27 22:49:51.818][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-03-27 22:49:51.845][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-03-27 22:49:51.848][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-27 22:49:51.850][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-27 22:49:51.853][private$addConnectorRules] Create new rule for URL "F:/biocbuild/bbs-3.18-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-03-27 22:49:51.856][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-27 22:49:51.858][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-03-27 22:49:51.872][biodb::testThat]
biodb.INFO [2024-03-27 22:49:51.874][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2024-03-27 22:49:51.876][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-27 22:49:51.878][biodb::testThat]
biodb.TRACE[2024-03-27 22:49:51.887][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.18-bioc/R/library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2024-03-27 22:49:51.891][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-03-27 22:49:51.897][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-03-27 22:49:51.908][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-27 22:49:51.909][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:49:51.956][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:49:51.968][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:49:51.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:49:51.972][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:51.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-27 22:49:51.987][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:49:51.989][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:49:51.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:51.991][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:51.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:49:52.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:49:52.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.009][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:52.010][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:52.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.013][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.037][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:52.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:52.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.042][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 22:49:52.043][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 22:49:52.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.046][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.048][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 22:49:52.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 22:49:52.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.053][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 22:49:52.054][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 22:49:52.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.057][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.059][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 22:49:52.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 22:49:52.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.065][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 22:49:52.067][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 22:49:52.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.069][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 22:49:52.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 22:49:52.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.076][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 22:49:52.077][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 22:49:52.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.080][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.082][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 22:49:52.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 22:49:52.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.087][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:49:52.089][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:49:52.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.091][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.093][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:49:52.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:49:52.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.099][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:49:52.100][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:49:52.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.102][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.104][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:49:52.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:49:52.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.109][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:49:52.111][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:49:52.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.114][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.115][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:49:52.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:49:52.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.120][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:49:52.122][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:49:52.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.124][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.126][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:49:52.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:49:52.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.131][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 22:49:52.133][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 22:49:52.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.135][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.137][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 22:49:52.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 22:49:52.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.142][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 22:49:52.143][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 22:49:52.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.146][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.147][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 22:49:52.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 22:49:52.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.152][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 22:49:52.154][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:49:52.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.156][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.158][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 22:49:52.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:49:52.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.163][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:49:52.164][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:49:52.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.166][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:49:52.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:49:52.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.173][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:49:52.180][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:49:52.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.183][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.184][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:49:52.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:49:52.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.189][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:49:52.191][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:49:52.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.193][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.195][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:49:52.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:49:52.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.200][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 22:49:52.201][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 22:49:52.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.204][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.205][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 22:49:52.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 22:49:52.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.210][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-03-27 22:49:52.212][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 22:49:52.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.214][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.216][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-03-27 22:49:52.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 22:49:52.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:49:52.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:49:52.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:49:52.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:49:52.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:49:52.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:49:52.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.273][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 22:49:52.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 22:49:52.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.280][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 22:49:52.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 22:49:52.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.286][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 22:49:52.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 22:49:52.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.291][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 22:49:52.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 22:49:52.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.298][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 22:49:52.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 22:49:52.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.304][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 22:49:52.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 22:49:52.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 22:49:52.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 22:49:52.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 22:49:52.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 22:49:52.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 22:49:52.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 22:49:52.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 22:49:52.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 22:49:52.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 22:49:52.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 22:49:52.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 22:49:52.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 22:49:52.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.343][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:49:52.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:49:52.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.348][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:49:52.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:49:52.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.354][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:49:52.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:49:52.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.359][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:49:52.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:49:52.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.364][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:49:52.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:49:52.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.370][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:49:52.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:49:52.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.375][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-27 22:49:52.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 22:49:52.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.380][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-27 22:49:52.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 22:49:52.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.386][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-27 22:49:52.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 22:49:52.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.393][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:49:52.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:49:52.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.403][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:49:52.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:49:52.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.409][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:49:52.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:49:52.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.414][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 22:49:52.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 22:49:52.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.419][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 22:49:52.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 22:49:52.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.425][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 22:49:52.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 22:49:52.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.433][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 22:49:52.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 22:49:52.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.440][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 22:49:52.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 22:49:52.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.445][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 22:49:52.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 22:49:52.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.450][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 22:49:52.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:49:52.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.455][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 22:49:52.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:49:52.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.460][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 22:49:52.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:49:52.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.465][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:49:52.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:49:52.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.470][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:49:52.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:49:52.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.478][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:49:52.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:49:52.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:49:52.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:49:52.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.494][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:49:52.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:49:52.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.501][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:49:52.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:49:52.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.509][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:49:52.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:49:52.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.517][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:49:52.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:49:52.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.525][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:49:52.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:49:52.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.533][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:49:52.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:49:52.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.540][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:49:52.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:49:52.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.548][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:49:52.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:49:52.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.557][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:52.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:52.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.565][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:52.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:52.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.572][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:52.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:52.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.580][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 22:49:52.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 22:49:52.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.588][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 22:49:52.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 22:49:52.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.596][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 22:49:52.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 22:49:52.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.604][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-03-27 22:49:52.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:49:52.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.612][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 22:49:52.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:49:52.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.620][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 22:49:52.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:49:52.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.627][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 22:49:52.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:49:52.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.635][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-03-27 22:49:52.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:49:52.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.668][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:49:52.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:49:52.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.676][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:49:52.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:49:52.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.684][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:49:52.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:49:52.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.700][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:49:52.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:49:52.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.708][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:49:52.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:49:52.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.716][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 22:49:52.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 22:49:52.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.723][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 22:49:52.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 22:49:52.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:49:52.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:49:52.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.738][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 22:49:52.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 22:49:52.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:49:52.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:49:52.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:49:52.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:49:52.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:49:52.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:49:52.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:49:52.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:49:52.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:49:52.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:49:52.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:49:52.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:49:52.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-27 22:49:52.794][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2024-03-27 22:49:52.798][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-27 22:49:52.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-27 22:49:52.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.807][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-27 22:49:52.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-27 22:49:52.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.815][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-03-27 22:49:52.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-03-27 22:49:52.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.823][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-03-27 22:49:52.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-03-27 22:49:52.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:49:52.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:49:52.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.885][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 22:49:52.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 22:49:52.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:49:52.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:49:52.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:49:52.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:49:52.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:49:52.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:49:52.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:49:52.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:49:52.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:49:52.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:49:52.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:49:52.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:49:52.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.952][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 22:49:52.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 22:49:52.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.961][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 22:49:52.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 22:49:52.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.969][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 22:49:52.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 22:49:52.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:52.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:49:52.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:49:52.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:52.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:49:53.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:49:53.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:49:53.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:49:53.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.011][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:49:53.012][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:49:53.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.014][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:49:53.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:49:53.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.033][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:53.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:53.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.038][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:53.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:53.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.049][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:53.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:53.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.054][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:53.056][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:53.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.058][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.059][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:53.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:53.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 22:49:53.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 22:49:53.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.081][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 22:49:53.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 22:49:53.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 22:49:53.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 22:49:53.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.091][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 22:49:53.092][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 22:49:53.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.094][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.096][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 22:49:53.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 22:49:53.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.111][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:49:53.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:49:53.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.117][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:49:53.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:49:53.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.121][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:49:53.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:49:53.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.127][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:49:53.128][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:49:53.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.130][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.131][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:49:53.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:49:53.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 22:49:53.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 22:49:53.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 22:49:53.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 22:49:53.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 22:49:53.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 22:49:53.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.162][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 22:49:53.163][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 22:49:53.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.166][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 22:49:53.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 22:49:53.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.184][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:49:53.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:49:53.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.189][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:49:53.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:49:53.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.194][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:49:53.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:49:53.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.199][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:49:53.200][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:49:53.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.203][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.204][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:49:53.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:49:53.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.225][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:49:53.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:49:53.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.234][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:49:53.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:49:53.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.242][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:49:53.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:49:53.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.247][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:49:53.248][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:49:53.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.250][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.251][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:49:53.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:49:53.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.266][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:49:53.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:49:53.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.272][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:49:53.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:49:53.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.277][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:49:53.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:49:53.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.287][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:49:53.288][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:49:53.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.291][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.292][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:49:53.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:49:53.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.309][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 22:49:53.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 22:49:53.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.318][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 22:49:53.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 22:49:53.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.326][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 22:49:53.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 22:49:53.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.334][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 22:49:53.336][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 22:49:53.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.340][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.342][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 22:49:53.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 22:49:53.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.367][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 22:49:53.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 22:49:53.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.376][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 22:49:53.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 22:49:53.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.384][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 22:49:53.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 22:49:53.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.392][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 22:49:53.394][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 22:49:53.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.398][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.400][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 22:49:53.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 22:49:53.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.424][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:49:53.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:49:53.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:49:53.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:49:53.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.441][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:49:53.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:49:53.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.449][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:49:53.451][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:49:53.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.454][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.456][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:49:53.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:49:53.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.481][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-27 22:49:53.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 22:49:53.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.490][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-27 22:49:53.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 22:49:53.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.498][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-27 22:49:53.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 22:49:53.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.504][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-27 22:49:53.506][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 22:49:53.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.508][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.510][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-27 22:49:53.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 22:49:53.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.527][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:49:53.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:49:53.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.536][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:49:53.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:49:53.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.545][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:49:53.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:49:53.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.553][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:49:53.555][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:49:53.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.559][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.562][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:49:53.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:49:53.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.586][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:49:53.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:49:53.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.593][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:49:53.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:49:53.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:49:53.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:49:53.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.605][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:49:53.606][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:49:53.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.608][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.615][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:49:53.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:49:53.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.632][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 22:49:53.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 22:49:53.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.638][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 22:49:53.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 22:49:53.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.643][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 22:49:53.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 22:49:53.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.649][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 22:49:53.650][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 22:49:53.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.653][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.654][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 22:49:53.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 22:49:53.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.670][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 22:49:53.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 22:49:53.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.675][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 22:49:53.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 22:49:53.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.681][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 22:49:53.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 22:49:53.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.686][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 22:49:53.687][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 22:49:53.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.690][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.691][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 22:49:53.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 22:49:53.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.707][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 22:49:53.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:49:53.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.712][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 22:49:53.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:49:53.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.717][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 22:49:53.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:49:53.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.724][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 22:49:53.725][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:49:53.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.727][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.729][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 22:49:53.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:49:53.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.744][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 22:49:53.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 22:49:53.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.750][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 22:49:53.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 22:49:53.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.755][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 22:49:53.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 22:49:53.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.760][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 22:49:53.761][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 22:49:53.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.764][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.765][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 22:49:53.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 22:49:53.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.782][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:49:53.784][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:49:53.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.786][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.794][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 22:49:53.795][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 22:49:53.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.798][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.805][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 22:49:53.807][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 22:49:53.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.809][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.817][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 22:49:53.818][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 22:49:53.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.821][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.828][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 22:49:53.830][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 22:49:53.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.832][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.840][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:49:53.841][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:49:53.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.844][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.851][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:49:53.852][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:49:53.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.855][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.868][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-27 22:49:53.869][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 22:49:53.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.872][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.879][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:49:53.881][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:49:53.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.884][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.891][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 22:49:53.893][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 22:49:53.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.895][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.903][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 22:49:53.905][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 22:49:53.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.907][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.915][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 22:49:53.916][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:49:53.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.919][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.929][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:49:53.931][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:49:53.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.936][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.947][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:49:53.950][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:49:53.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.954][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.966][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:49:53.969][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:49:53.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.973][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:53.986][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:49:53.988][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:49:53.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:53.993][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.005][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:54.008][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:54.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.012][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.024][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 22:49:54.027][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 22:49:54.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.031][ef$get] fields variable is a list.
biodb.INFO [2024-03-27 22:49:54.053][biodb::testThat]
biodb.INFO [2024-03-27 22:49:54.055][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-03-27 22:49:54.058][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-27 22:49:54.060][biodb::testThat]
biodb.DEBUG[2024-03-27 22:49:54.085][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-03-27 22:49:54.096][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-03-27 22:49:54.106][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 22:49:54.108][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-03-27 22:49:54.112][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-03-27 22:49:54.114][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-27 22:49:54.130][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-03-27 22:49:54.132][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-03-27 22:49:54.153][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-03-27 22:49:54.155][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-03-27 22:49:54.157][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-27 22:49:54.158][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:49:54.159][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:49:54.167][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:49:54.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:49:54.169][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:49:54.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-27 22:49:54.175][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:49:54.176][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:49:54.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.179][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:49:54.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:49:54.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.192][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:54.193][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:54.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.195][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.197][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:54.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:54.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.204][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 22:49:54.205][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 22:49:54.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.208][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.210][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 22:49:54.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 22:49:54.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.217][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 22:49:54.218][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 22:49:54.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.221][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.223][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 22:49:54.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 22:49:54.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.228][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 22:49:54.229][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 22:49:54.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.232][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 22:49:54.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 22:49:54.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.238][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 22:49:54.240][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 22:49:54.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.242][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 22:49:54.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 22:49:54.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.252][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:49:54.254][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:49:54.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.257][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.259][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:49:54.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:49:54.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.264][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:49:54.266][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:49:54.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.270][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.272][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:49:54.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:49:54.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.281][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:49:54.283][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:49:54.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.287][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.290][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:49:54.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:49:54.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.299][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:49:54.301][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:49:54.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.304][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.307][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:49:54.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:49:54.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.314][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 22:49:54.316][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 22:49:54.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.319][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.322][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 22:49:54.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 22:49:54.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.330][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 22:49:54.332][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 22:49:54.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.335][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.337][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 22:49:54.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 22:49:54.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.342][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 22:49:54.343][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:49:54.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.346][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.348][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 22:49:54.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:49:54.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.353][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:49:54.354][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:49:54.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.357][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.358][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:49:54.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:49:54.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.364][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:49:54.365][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:49:54.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.367][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.369][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:49:54.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:49:54.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.374][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:49:54.375][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:49:54.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.378][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.379][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:49:54.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:49:54.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.385][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 22:49:54.386][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 22:49:54.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.389][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.391][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 22:49:54.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 22:49:54.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.396][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-03-27 22:49:54.397][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 22:49:54.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.399][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.401][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-03-27 22:49:54.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 22:49:54.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:49:54.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:49:54.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:49:54.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:49:54.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:49:54.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:49:54.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.428][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 22:49:54.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 22:49:54.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.436][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 22:49:54.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 22:49:54.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.444][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 22:49:54.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 22:49:54.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.460][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 22:49:54.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 22:49:54.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.468][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 22:49:54.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 22:49:54.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.477][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 22:49:54.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 22:49:54.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 22:49:54.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 22:49:54.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 22:49:54.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 22:49:54.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 22:49:54.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 22:49:54.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 22:49:54.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 22:49:54.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 22:49:54.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 22:49:54.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 22:49:54.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 22:49:54.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.533][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:49:54.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:49:54.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.541][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:49:54.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:49:54.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.549][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:49:54.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:49:54.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.557][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:49:54.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:49:54.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.565][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:49:54.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:49:54.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.573][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:49:54.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:49:54.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.581][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-27 22:49:54.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 22:49:54.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.588][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-27 22:49:54.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 22:49:54.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.596][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-27 22:49:54.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 22:49:54.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.603][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:49:54.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:49:54.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.611][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:49:54.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:49:54.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.619][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:49:54.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:49:54.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.627][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 22:49:54.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 22:49:54.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.635][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 22:49:54.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 22:49:54.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.642][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 22:49:54.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 22:49:54.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.650][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 22:49:54.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 22:49:54.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.658][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 22:49:54.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 22:49:54.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.666][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 22:49:54.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 22:49:54.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.674][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 22:49:54.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:49:54.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.682][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 22:49:54.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:49:54.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.690][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 22:49:54.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:49:54.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.698][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:49:54.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:49:54.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.706][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:49:54.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:49:54.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.713][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:49:54.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:49:54.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.721][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:49:54.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:49:54.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:49:54.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:49:54.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:49:54.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:49:54.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.745][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:49:54.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:49:54.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.752][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:49:54.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:49:54.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.760][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:49:54.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:49:54.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.767][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:49:54.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:49:54.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.775][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:49:54.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:49:54.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.790][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:49:54.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:49:54.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.798][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:54.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:54.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.805][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:54.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:54.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.813][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:54.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:54.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.820][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 22:49:54.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 22:49:54.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.827][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 22:49:54.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 22:49:54.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.835][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 22:49:54.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 22:49:54.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.842][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-03-27 22:49:54.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:49:54.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.850][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 22:49:54.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:49:54.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.857][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 22:49:54.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:49:54.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.865][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 22:49:54.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:49:54.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.872][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-03-27 22:49:54.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:49:54.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.882][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:49:54.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:49:54.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.891][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:49:54.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:49:54.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.900][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:49:54.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:49:54.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.909][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:49:54.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:49:54.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.917][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:49:54.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:49:54.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.926][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 22:49:54.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 22:49:54.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.933][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 22:49:54.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 22:49:54.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:49:54.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:49:54.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.949][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 22:49:54.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 22:49:54.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:49:54.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:49:54.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:49:54.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:49:54.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:49:54.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:49:54.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:49:54.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:49:54.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:49:54.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:49:54.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:54.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:54.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:49:54.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:49:55.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:55.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-27 22:49:55.005][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-03-27 22:49:55.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-03-27 22:49:55.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-03-27 22:49:55.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:55.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:55.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-03-27 22:49:55.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-03-27 22:49:55.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:55.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:55.020][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-03-27 22:49:55.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-03-27 22:49:55.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:55.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-03-27 22:49:55.037][biodb::testThat]
biodb.INFO [2024-03-27 22:49:55.039][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2024-03-27 22:49:55.040][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-27 22:49:55.041][biodb::testThat]
biodb.TRACE[2024-03-27 22:49:55.045][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:49:55.046][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:49:55.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:55.049][ef$get] fields variable is a list.
biodb.DEBUG[2024-03-27 22:49:55.051][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2024-03-27 22:49:55.086][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:49:55.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:49:55.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:55.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:55.091][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:49:55.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:49:55.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:55.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:55.096][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:49:55.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:49:55.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:55.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-27 22:49:55.104][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2024-03-27 22:49:55.106][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-03-27 22:49:55.107][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-03-27 22:49:55.108][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-03-27 22:49:55.111][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 22:49:55.112][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 22:49:55.114][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-03-27 22:49:55.116][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 22:49:55.118][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-03-27 22:49:55.119][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-03-27 22:49:55.121][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-03-27 22:49:55.122][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-03-27 22:49:55.123][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-03-27 22:49:55.125][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-03-27 22:49:55.126][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-03-27 22:49:55.128][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:49:55.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:49:55.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:55.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:55.133][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:49:55.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:49:55.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:55.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:55.138][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:49:55.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:49:55.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:55.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:55.143][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:49:55.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:49:55.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:55.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-27 22:49:55.148][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-03-27 22:49:55.149][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-03-27 22:49:55.150][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-03-27 22:49:55.174][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:49:55.177][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:49:55.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:55.181][ef$get] fields variable is a list.
biodb.DEBUG[2024-03-27 22:49:55.184][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2024-03-27 22:49:55.214][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:49:55.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:49:55.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:55.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:55.222][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:49:55.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:49:55.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:55.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:55.230][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:49:55.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:49:55.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:55.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-27 22:49:55.242][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2024-03-27 22:49:55.325][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-03-27 22:49:55.327][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-03-27 22:49:55.330][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-03-27 22:49:55.346][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 22:49:55.349][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 22:49:55.351][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-03-27 22:49:55.352][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 22:49:55.354][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-03-27 22:49:55.368][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-03-27 22:49:55.370][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-03-27 22:49:55.371][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-03-27 22:49:55.372][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-03-27 22:49:55.374][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-03-27 22:49:55.375][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-03-27 22:49:55.377][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:49:55.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:49:55.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:55.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:55.382][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:49:55.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:49:55.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:55.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:55.388][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:49:55.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:49:55.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:55.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:55.394][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:49:55.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:49:55.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:55.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-27 22:49:55.403][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-03-27 22:49:55.404][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-03-27 22:49:55.405][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-03-27 22:49:55.429][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:55.431][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:55.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:55.433][ef$get] fields variable is a list.
biodb.DEBUG[2024-03-27 22:49:55.435][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2024-03-27 22:49:55.457][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:55.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:55.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:55.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:55.462][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:55.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:55.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:55.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:55.468][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:55.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:55.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:55.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-27 22:49:55.478][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2024-03-27 22:49:55.481][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2024-03-27 22:49:55.483][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-03-27 22:49:55.484][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-03-27 22:49:55.488][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 22:49:55.490][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 22:49:55.493][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-03-27 22:49:55.495][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 22:49:55.497][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-03-27 22:49:55.499][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-03-27 22:49:55.500][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-03-27 22:49:55.502][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-03-27 22:49:55.503][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-03-27 22:49:55.504][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-03-27 22:49:55.505][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-03-27 22:49:55.507][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:55.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:55.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:55.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:55.513][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:55.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:55.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:55.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:55.519][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:55.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:55.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:55.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:55.527][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:55.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 22:49:55.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:55.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-27 22:49:55.534][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-03-27 22:49:55.536][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-03-27 22:49:55.538][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2024-03-27 22:49:55.577][biodb::testThat]
biodb.INFO [2024-03-27 22:49:55.579][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2024-03-27 22:49:55.581][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-27 22:49:55.583][biodb::testThat]
biodb.TRACE[2024-03-27 22:49:55.611][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:49:55.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:49:55.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:55.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:55.616][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:49:55.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:49:55.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:55.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:55.621][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:49:55.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:49:55.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:55.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-27 22:49:55.638][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-03-27 22:49:55.640][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-03-27 22:49:55.641][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-03-27 22:49:55.643][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 22:49:55.645][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 22:49:55.647][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-03-27 22:49:55.649][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 22:49:55.650][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-03-27 22:49:55.652][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-03-27 22:49:55.653][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-03-27 22:49:55.654][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-03-27 22:49:55.655][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-03-27 22:49:55.657][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-03-27 22:49:55.658][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-03-27 22:49:55.660][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:49:55.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:49:55.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:55.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:55.665][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:49:55.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:49:55.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:55.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:55.670][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:49:55.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:49:55.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:55.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:55.675][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:49:55.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:49:55.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:55.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-27 22:49:55.680][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-03-27 22:49:55.681][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2024-03-27 22:49:55.705][biodb::testThat]
biodb.INFO [2024-03-27 22:49:55.707][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2024-03-27 22:49:55.708][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-27 22:49:55.710][biodb::testThat]
biodb.TRACE[2024-03-27 22:49:55.736][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-27 22:49:55.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-27 22:49:55.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:55.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:55.742][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-27 22:49:55.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-27 22:49:55.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:55.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:55.747][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-03-27 22:49:55.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-03-27 22:49:55.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:55.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:55.753][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-03-27 22:49:55.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-03-27 22:49:55.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:55.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:55.828][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-27 22:49:55.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-27 22:49:55.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:55.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:55.837][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-27 22:49:55.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-27 22:49:55.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:55.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:55.846][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-03-27 22:49:55.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-03-27 22:49:55.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:55.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:49:55.854][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-03-27 22:49:55.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-03-27 22:49:55.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:49:55.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-03-27 22:49:55.874][biodb::testThat]
biodb.INFO [2024-03-27 22:49:55.876][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-03-27 22:49:55.879][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-27 22:49:55.881][biodb::testThat]
biodb.INFO [2024-03-27 22:49:55.897][biodb::testThat]
biodb.INFO [2024-03-27 22:49:55.899][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-03-27 22:49:55.901][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-27 22:49:55.902][biodb::testThat]
biodb.INFO [2024-03-27 22:49:55.915][biodb::testThat]
biodb.INFO [2024-03-27 22:49:55.916][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2024-03-27 22:49:55.918][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-27 22:49:55.919][biodb::testThat]
biodb.DEBUG[2024-03-27 22:49:55.924][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2024-03-27 22:49:56.270][getUrlContent] Use base::url() for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2024-03-27 22:51:00.690][biodb::testThat]
biodb.INFO [2024-03-27 22:51:00.692][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2024-03-27 22:51:00.694][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-27 22:51:00.697][biodb::testThat]
biodb.DEBUG[2024-03-27 22:51:00.844][getUrlContent] Use base::url() for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2024-03-27 22:51:18.981][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:51:18.983][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:51:18.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:18.986][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:18.988][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:18.990][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:18.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:18.994][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:18.996][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 22:51:18.998][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 22:51:19.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:19.001][ef$get] fields variable is a list.
biodb.INFO [2024-03-27 22:51:19.003][biodb::testThat]
biodb.INFO [2024-03-27 22:51:19.004][biodb::testThat] Running test function test.wrong.entry (" Wrong entry gives NULL ").
biodb.INFO [2024-03-27 22:51:19.006][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-27 22:51:19.007][biodb::testThat]
biodb.DEBUG[2024-03-27 22:51:19.010][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2024-03-27 22:51:19.068][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.INFO [2024-03-27 22:51:19.071][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34" for "hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34".
biodb.DEBUG[2024-03-27 22:51:19.075][self$isDownloaded] Database hmdb.metabolites has not yet been downloaded.
biodb.INFO [2024-03-27 22:51:19.076][self$download] Downloading whole database of hmdb.metabolites.
biodb.INFO [2024-03-27 22:51:19.078][private$doDownload] Downloading HMDB metabolite database at "F:/biocbuild/bbs-3.18-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" ...
biodb.TRACE[2024-03-27 22:51:19.081][cch$addFilesToCache] Moving files to cache [1]: "F:/biocbuild/bbs-3.18-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.TRACE[2024-03-27 22:51:19.082][private$doAddFilesToCache] Destination files are [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip".
biodb.DEBUG[2024-03-27 22:51:19.087][cch$addFilesToCache] Done adding files.
biodb.DEBUG[2024-03-27 22:51:19.089][self$getDownloadPath] Download path of hmdb.metabolites is "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip".
biodb.DEBUG[2024-03-27 22:51:19.091][self$download] Downloading of hmdb.metabolites completed.
biodb.TRACE[2024-03-27 22:51:19.094][self$addFilesToCache] Moving files to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/tmp\marker326022d05268marker".
biodb.TRACE[2024-03-27 22:51:19.096][private$doAddFilesToCache] Destination files are [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/downloaded.marker".
biodb.DEBUG[2024-03-27 22:51:19.101][self$addFilesToCache] Done adding files.
biodb.DEBUG[2024-03-27 22:51:19.104][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2024-03-27 22:51:19.107][self$download] Extract whole database of hmdb.metabolites.
biodb.INFO [2024-03-27 22:51:19.109][private$doExtractDownload] Extracting content of downloaded',
' HMDB metabolite database...
biodb.DEBUG[2024-03-27 22:51:19.112][self$getDownloadPath] Download path of hmdb.metabolites is "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip".
biodb.DEBUG[2024-03-27 22:51:19.114][private$doExtractDownload] Unzipping C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip into C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/tmp...
biodb.DEBUG[2024-03-27 22:51:19.153][private$findXmlDatabaseFile] Found files [1]: "hmdb_two_full_entries.xml" into C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip.
biodb.DEBUG[2024-03-27 22:51:19.155][private$findXmlDatabaseFile] Found XML file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/tmp/hmdb_two_full_entries.xml in ZIP file.
biodb.DEBUG[2024-03-27 22:51:19.156][private$doExtractDownload] Delete existing entry files in cache system.
biodb.DEBUG[2024-03-27 22:51:19.158][private$doExtractDownload] Extract entries from XML file "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/tmp/hmdb_two_full_entries.xml", into "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/tmp".
biodb.TRACE[2024-03-27 22:51:19.171][self$addFilesToCache] Moving files to cache [2]: "C:\Users\biocbuild\AppData\Local\R\cache\R\biodb\tmp/HMDB0000001.xml, C:\Users\biocbuild\AppData\Local\R\cache\R\biodb\tmp/HMDB0000002.xml".
biodb.TRACE[2024-03-27 22:51:19.173][private$doAddFilesToCache] Destination files are [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-03-27 22:51:19.184][self$addFilesToCache] Done adding files.
biodb.DEBUG[2024-03-27 22:51:19.186][private$doExtractDownload] Delete extracted database.
biodb.TRACE[2024-03-27 22:51:19.190][self$addFilesToCache] Moving files to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/tmp\marker326035032c39marker".
biodb.TRACE[2024-03-27 22:51:19.191][private$doAddFilesToCache] Destination files are [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/extracted.marker".
biodb.DEBUG[2024-03-27 22:51:19.200][self$addFilesToCache] Done adding files.
biodb.TRACE[2024-03-27 22:51:19.223][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2024-03-27 22:51:19.225][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-27 22:51:19.227][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-27 22:51:19.228][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-03-27 22:51:19.230][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 22:51:19.232][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-03-27 22:51:19.234][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-03-27 22:51:19.236][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-27 22:51:19.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:19.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:19.248][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:19.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:19.251][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:19.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-27 22:51:19.255][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 22:51:19.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 22:51:19.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:19.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:19.261][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 22:51:19.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 22:51:19.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:19.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:19.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:19.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:19.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:19.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:19.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:19.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:19.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:19.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:19.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:19.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:19.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:19.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:19.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:19.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:19.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:19.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:19.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:19.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:19.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:19.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:19.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:19.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:19.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:19.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-27 22:51:19.296][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-03-27 22:51:19.297][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2024-03-27 22:51:19.319][biodb::testThat]
biodb.INFO [2024-03-27 22:51:19.320][biodb::testThat] Running test function test.wrong.entry.among.good.ones (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2024-03-27 22:51:19.321][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-27 22:51:19.323][biodb::testThat]
biodb.DEBUG[2024-03-27 22:51:19.337][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2024-03-27 22:51:19.340][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2024-03-27 22:51:19.342][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-03-27 22:51:19.345][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 22:51:19.348][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-03-27 22:51:19.351][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2024-03-27 22:51:19.353][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-27 22:51:19.355][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-27 22:51:19.357][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-03-27 22:51:19.361][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 22:51:19.363][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-03-27 22:51:19.366][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-03-27 22:51:19.368][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-27 22:51:19.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:19.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:19.383][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:19.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:19.387][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:19.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-27 22:51:19.393][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 22:51:19.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 22:51:19.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:19.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:19.400][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 22:51:19.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 22:51:19.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:19.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:19.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:19.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:19.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:19.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:19.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:19.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:19.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:19.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:19.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:19.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:19.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:19.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:19.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:19.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:19.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:19.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:19.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:19.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:19.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:19.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:19.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:19.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:19.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:19.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-27 22:51:19.442][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-03-27 22:51:19.443][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2024-03-27 22:51:19.444][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2024-03-27 22:51:19.469][biodb::testThat]
biodb.INFO [2024-03-27 22:51:19.471][biodb::testThat] Running test function test.peak.table (" The peak table is correct. ").
biodb.INFO [2024-03-27 22:51:19.473][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-27 22:51:19.475][biodb::testThat]
biodb.INFO [2024-03-27 22:51:19.518][biodb::testThat]
biodb.INFO [2024-03-27 22:51:19.520][biodb::testThat] Running test function test.nb.entries (" Nb entries is positive. ").
biodb.INFO [2024-03-27 22:51:19.522][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-27 22:51:19.524][biodb::testThat]
biodb.DEBUG[2024-03-27 22:51:19.529][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 22:51:19.532][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 22:51:19.535][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-03-27 22:51:19.538][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 22:51:19.540][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-03-27 22:51:19.543][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-03-27 22:51:19.545][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-03-27 22:51:19.547][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-03-27 22:51:19.549][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2024-03-27 22:51:19.564][biodb::testThat]
biodb.INFO [2024-03-27 22:51:19.565][biodb::testThat] Running test function test.entry.ids (" We can get a list of entry ids. ").
biodb.INFO [2024-03-27 22:51:19.566][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-27 22:51:19.567][biodb::testThat]
biodb.DEBUG[2024-03-27 22:51:19.571][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 22:51:19.573][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 22:51:19.575][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-03-27 22:51:19.578][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 22:51:19.579][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-03-27 22:51:19.582][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-03-27 22:51:19.584][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-03-27 22:51:19.586][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-03-27 22:51:19.588][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2024-03-27 22:51:19.610][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:51:19.612][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:51:19.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:19.616][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:19.618][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:19.620][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:19.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:19.624][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:19.626][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 22:51:19.628][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 22:51:19.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:19.632][ef$get] fields variable is a list.
biodb.INFO [2024-03-27 22:51:19.634][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-03-27 22:51:19.636][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-03-27 22:51:19.649][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-03-27 22:51:19.652][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-03-27 22:51:19.654][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:19.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:19.657][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:19.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:19.661][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:19.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-03-27 22:51:19.679][biodb::testContext]
biodb.INFO [2024-03-27 22:51:19.681][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-27 22:51:19.683][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2024-03-27 22:51:19.685][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-27 22:51:19.687][biodb::testContext]
biodb.INFO [2024-03-27 22:51:19.696][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.10.0.
biodb.DEBUG[2024-03-27 22:51:19.700][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.18-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-03-27 22:51:19.708][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-27 22:51:19.711][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-03-27 22:51:19.713][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-03-27 22:51:19.715][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:19.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:19.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:19.721][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-03-27 22:51:19.723][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-03-27 22:51:19.725][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:19.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:19.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:19.730][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-03-27 22:51:19.732][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-03-27 22:51:19.734][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:19.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:19.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:19.740][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-03-27 22:51:19.742][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-03-27 22:51:19.744][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-03-27 22:51:19.746][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:19.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:19.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:19.752][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-03-27 22:51:19.754][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-03-27 22:51:19.756][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-03-27 22:51:19.758][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:19.760][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:19.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:19.764][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-03-27 22:51:19.766][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-03-27 22:51:19.768][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:19.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:19.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:19.773][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-03-27 22:51:19.775][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-03-27 22:51:19.778][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-03-27 22:51:19.780][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:19.781][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:19.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:19.785][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-03-27 22:51:19.787][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-03-27 22:51:19.789][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:19.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:19.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:19.795][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-03-27 22:51:19.797][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-03-27 22:51:19.799][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-03-27 22:51:19.801][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:19.803][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:19.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:19.806][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-03-27 22:51:19.808][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-03-27 22:51:19.810][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-03-27 22:51:19.812][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-03-27 22:51:19.815][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-03-27 22:51:19.817][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-03-27 22:51:19.819][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:19.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:19.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:19.824][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-03-27 22:51:19.826][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-03-27 22:51:19.828][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:19.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:19.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:19.834][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-03-27 22:51:19.836][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-03-27 22:51:19.837][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:19.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:19.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:19.841][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-03-27 22:51:19.842][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-03-27 22:51:19.843][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:19.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:19.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:19.847][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-03-27 22:51:19.848][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-03-27 22:51:19.849][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:19.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:19.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:19.853][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-03-27 22:51:19.854][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-03-27 22:51:19.855][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:19.856][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:19.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:19.859][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-03-27 22:51:19.860][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-03-27 22:51:19.864][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-03-27 22:51:19.865][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:19.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:19.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:19.869][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-03-27 22:51:19.870][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-03-27 22:51:19.871][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-03-27 22:51:19.872][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:19.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:19.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:19.876][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-03-27 22:51:19.878][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-27 22:51:19.879][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-03-27 22:51:19.880][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-27 22:51:19.882][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-27 22:51:19.883][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-27 22:51:19.884][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-27 22:51:19.885][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-27 22:51:19.887][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-27 22:51:19.888][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-03-27 22:51:19.889][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-27 22:51:19.890][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-27 22:51:19.892][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-03-27 22:51:19.893][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-27 22:51:19.894][self$setPropertyValue]
biodb.DEBUG[2024-03-27 22:51:19.896][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-27 22:51:19.897][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-27 22:51:19.897][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-27 22:51:19.897][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-27 22:51:19.897][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-03-27 22:51:19.897][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-03-27 22:51:19.899][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-27 22:51:19.901][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 22:51:19.902][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 22:51:19.903][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-27 22:51:19.905][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 22:51:19.906][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 22:51:19.907][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-27 22:51:19.908][self$setPropertyValue]
biodb.DEBUG[2024-03-27 22:51:19.909][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-27 22:51:19.910][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-27 22:51:19.912][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-27 22:51:19.913][self$setPropertyValue]
biodb.DEBUG[2024-03-27 22:51:19.922][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-03-27 22:51:19.926][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-27 22:51:19.928][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-03-27 22:51:19.930][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-27 22:51:19.932][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-27 22:51:19.934][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-27 22:51:19.937][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-27 22:51:19.939][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-27 22:51:19.941][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-27 22:51:19.943][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-03-27 22:51:19.945][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-27 22:51:19.947][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-27 22:51:19.949][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-03-27 22:51:19.951][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-27 22:51:19.953][self$setPropertyValue]
biodb.DEBUG[2024-03-27 22:51:19.955][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-27 22:51:19.956][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-27 22:51:19.956][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-27 22:51:19.956][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-27 22:51:19.956][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-03-27 22:51:19.956][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-03-27 22:51:19.958][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-27 22:51:19.959][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 22:51:19.960][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 22:51:19.962][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-27 22:51:19.963][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 22:51:19.964][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 22:51:19.965][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-27 22:51:19.966][self$setPropertyValue]
biodb.DEBUG[2024-03-27 22:51:19.968][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-27 22:51:19.969][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-27 22:51:19.970][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-27 22:51:19.971][self$setPropertyValue]
biodb.DEBUG[2024-03-27 22:51:19.973][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-03-27 22:51:19.975][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-27 22:51:19.976][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-03-27 22:51:19.977][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-27 22:51:19.979][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-27 22:51:19.980][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-27 22:51:19.982][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-27 22:51:19.984][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-27 22:51:19.986][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-27 22:51:19.988][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-03-27 22:51:19.990][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-27 22:51:19.992][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-03-27 22:51:19.993][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-03-27 22:51:19.995][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-27 22:51:19.996][self$setPropertyValue]
biodb.DEBUG[2024-03-27 22:51:19.997][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-27 22:51:19.998][self$setPropertyValue]
biodb.DEBUG[2024-03-27 22:51:19.999][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-27 22:51:20.001][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 22:51:20.002][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 22:51:20.003][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-27 22:51:20.004][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 22:51:20.005][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 22:51:20.007][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-27 22:51:20.008][self$setPropertyValue]
biodb.DEBUG[2024-03-27 22:51:20.009][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-27 22:51:20.010][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-27 22:51:20.011][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-27 22:51:20.013][self$setPropertyValue]
biodb.DEBUG[2024-03-27 22:51:20.014][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-03-27 22:51:20.016][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-27 22:51:20.017][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-03-27 22:51:20.019][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-27 22:51:20.020][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-27 22:51:20.021][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-27 22:51:20.022][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-27 22:51:20.023][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-27 22:51:20.025][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-27 22:51:20.026][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-03-27 22:51:20.027][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-27 22:51:20.028][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-03-27 22:51:20.030][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-03-27 22:51:20.031][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-27 22:51:20.032][self$setPropertyValue]
biodb.DEBUG[2024-03-27 22:51:20.033][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-27 22:51:20.035][self$setPropertyValue]
biodb.DEBUG[2024-03-27 22:51:20.036][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-27 22:51:20.037][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 22:51:20.038][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 22:51:20.039][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-27 22:51:20.041][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 22:51:20.042][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 22:51:20.043][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-27 22:51:20.044][self$setPropertyValue]
biodb.DEBUG[2024-03-27 22:51:20.045][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-27 22:51:20.047][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-27 22:51:20.048][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-27 22:51:20.049][self$setPropertyValue]
biodb.DEBUG[2024-03-27 22:51:20.051][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-27 22:51:20.052][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:20.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:20.054][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:20.055][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:20.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:20.057][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:20.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:20.060][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:20.061][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:20.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:20.063][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:20.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:20.065][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:20.066][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:20.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:20.068][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:20.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:20.071][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:20.072][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:20.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:20.074][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:20.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:20.076][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:20.077][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:20.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:20.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:20.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:20.082][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:20.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:20.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:20.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:20.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:20.087][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:20.089][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:20.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:20.091][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:20.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:20.093][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:20.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:20.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:20.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:20.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:20.099][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:20.100][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:20.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:20.102][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:20.103][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:20.110][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:20.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:20.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:20.113][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:20.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:20.115][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:20.117][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:20.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:20.119][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:20.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:20.121][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:20.122][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:20.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:20.124][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:20.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:20.127][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:20.128][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:20.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:20.130][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:20.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:20.132][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:20.133][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:20.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:20.136][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:20.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:20.138][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:20.139][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:20.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:20.141][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:20.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:20.143][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:20.145][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:20.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:20.147][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:20.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:20.149][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:20.150][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:20.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:20.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:20.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:20.155][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-03-27 22:51:20.157][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-03-27 22:51:20.158][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-03-27 22:51:20.160][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-03-27 22:51:20.162][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-03-27 22:51:20.163][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-03-27 22:51:20.165][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-03-27 22:51:20.168][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-03-27 22:51:20.170][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-03-27 22:51:20.173][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-03-27 22:51:20.175][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-03-27 22:51:20.178][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-03-27 22:51:20.180][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-03-27 22:51:20.183][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-03-27 22:51:20.186][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-03-27 22:51:20.188][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-03-27 22:51:20.191][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-03-27 22:51:20.193][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-03-27 22:51:20.196][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-03-27 22:51:20.198][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-03-27 22:51:20.201][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-03-27 22:51:20.203][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-03-27 22:51:20.206][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-03-27 22:51:20.208][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-03-27 22:51:20.211][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-03-27 22:51:20.214][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-03-27 22:51:20.216][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-03-27 22:51:20.219][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-03-27 22:51:20.221][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-03-27 22:51:20.224][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-03-27 22:51:20.226][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-03-27 22:51:20.229][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-03-27 22:51:20.231][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-03-27 22:51:20.234][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-03-27 22:51:20.236][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-03-27 22:51:20.239][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-03-27 22:51:20.241][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-03-27 22:51:20.244][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-03-27 22:51:20.246][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-03-27 22:51:20.249][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-03-27 22:51:20.251][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-03-27 22:51:20.254][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-03-27 22:51:20.256][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-03-27 22:51:20.259][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-03-27 22:51:20.261][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-03-27 22:51:20.264][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-03-27 22:51:20.267][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-03-27 22:51:20.269][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-03-27 22:51:20.272][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-03-27 22:51:20.274][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-03-27 22:51:20.277][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-03-27 22:51:20.279][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-03-27 22:51:20.282][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-03-27 22:51:20.284][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-03-27 22:51:20.287][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-03-27 22:51:20.289][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-03-27 22:51:20.292][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-03-27 22:51:20.294][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-03-27 22:51:20.297][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-03-27 22:51:20.299][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-03-27 22:51:20.302][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-03-27 22:51:20.304][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-03-27 22:51:20.307][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-03-27 22:51:20.309][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-03-27 22:51:20.312][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-03-27 22:51:20.314][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-03-27 22:51:20.347][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-03-27 22:51:20.351][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-03-27 22:51:20.353][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-03-27 22:51:20.356][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-03-27 22:51:20.359][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-03-27 22:51:20.361][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-03-27 22:51:20.364][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-03-27 22:51:20.366][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-03-27 22:51:20.369][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-03-27 22:51:20.372][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-03-27 22:51:20.374][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-03-27 22:51:20.377][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-03-27 22:51:20.379][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-03-27 22:51:20.382][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-03-27 22:51:20.384][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-03-27 22:51:20.387][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-03-27 22:51:20.390][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-03-27 22:51:20.392][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-03-27 22:51:20.396][initialize] This is biodb version 1.10.0.
biodb.DEBUG[2024-03-27 22:51:20.398][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-27 22:51:20.400][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:20.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:20.403][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:20.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:20.407][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:20.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:20.411][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:20.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:20.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:20.416][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:20.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:20.419][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:20.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:20.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:20.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:20.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:20.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:20.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:20.432][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:20.433][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:20.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:20.437][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:20.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:20.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:20.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:20.444][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:20.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:20.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:20.449][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:20.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:20.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:20.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:20.457][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:20.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:20.460][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:20.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:20.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:20.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:20.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:20.469][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:20.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:20.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:20.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:20.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:20.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:20.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:20.481][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:20.483][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:20.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:20.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:20.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:20.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:20.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:20.491][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:20.493][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:20.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:20.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:20.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:20.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:20.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:20.499][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:20.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:20.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:20.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:20.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:20.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:20.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:20.507][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:20.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:20.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:20.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:20.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:20.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:20.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:20.515][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:20.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:20.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:20.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:20.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:20.521][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:20.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:20.523][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:20.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:20.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:20.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:20.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:20.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:20.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:20.531][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:20.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:20.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:20.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:20.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:20.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:20.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:20.539][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:20.540][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:20.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:20.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:20.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:20.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:20.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:20.546][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:20.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:20.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:20.550][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:20.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:20.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:20.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:20.554][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:20.555][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:20.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:20.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:20.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:20.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:20.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:20.568][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:20.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:20.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:20.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:20.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:20.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:20.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:20.578][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.18-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-03-27 22:51:20.580][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-03-27 22:51:20.582][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-27 22:51:20.583][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-03-27 22:51:20.585][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-27 22:51:20.586][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-27 22:51:20.587][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-03-27 22:51:20.588][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-03-27 22:51:20.590][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-03-27 22:51:20.591][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-27 22:51:20.592][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-03-27 22:51:20.593][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-27 22:51:20.595][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-27 22:51:20.596][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-03-27 22:51:20.597][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-27 22:51:20.598][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-03-27 22:51:20.598][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-03-27 22:51:20.598][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-03-27 22:51:20.598][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-03-27 22:51:20.598][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-03-27 22:51:20.598][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-03-27 22:51:20.598][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-03-27 22:51:20.598][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-03-27 22:51:20.598][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-03-27 22:51:20.598][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-03-27 22:51:20.598][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-03-27 22:51:20.598][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-03-27 22:51:20.598][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-03-27 22:51:20.598][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-03-27 22:51:20.598][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-03-27 22:51:20.598][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-03-27 22:51:20.598][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-03-27 22:51:20.598][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-03-27 22:51:20.600][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-03-27 22:51:20.601][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-27 22:51:20.601][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-03-27 22:51:20.601][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-03-27 22:51:20.602][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-03-27 22:51:20.604][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 22:51:20.605][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 22:51:20.606][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-27 22:51:20.607][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 22:51:20.608][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 22:51:20.609][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-27 22:51:20.611][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-03-27 22:51:20.611][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-03-27 22:51:20.612][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-27 22:51:20.613][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-27 22:51:20.614][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-03-27 22:51:20.616][self$setPropertyValue]
biodb.DEBUG[2024-03-27 22:51:20.617][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-03-27 22:51:20.619][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-03-27 22:51:20.621][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-03-27 22:51:20.623][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-03-27 22:51:20.624][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-03-27 22:51:20.628][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-03-27 22:51:20.629][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-03-27 22:51:20.630][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-03-27 22:51:20.632][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-03-27 22:51:20.634][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-27 22:51:20.635][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-27 22:51:20.637][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-03-27 22:51:20.638][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-03-27 22:51:20.639][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-03-27 22:51:20.639][self$setPropertyValue] Setting property "urls" to "F:/biocbuild/bbs-3.18-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-03-27 22:51:20.640][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-27 22:51:20.642][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-27 22:51:20.643][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-03-27 22:51:20.644][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-03-27 22:51:20.645][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-03-27 22:51:20.647][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-03-27 22:51:20.648][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-27 22:51:20.650][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-27 22:51:20.652][private$addConnectorRules] Create new rule for URL "F:/biocbuild/bbs-3.18-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-03-27 22:51:20.653][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-27 22:51:20.654][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-03-27 22:51:20.656][biodb::testThat]
biodb.INFO [2024-03-27 22:51:20.657][biodb::testThat] Running test function test.hmdbmetabolite.nbentries (" HMDB metabolite returns enough entries. ").
biodb.INFO [2024-03-27 22:51:20.659][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-27 22:51:20.660][biodb::testThat]
biodb.DEBUG[2024-03-27 22:51:20.665][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 22:51:20.667][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 22:51:20.669][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-03-27 22:51:20.671][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 22:51:20.672][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-03-27 22:51:20.674][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-03-27 22:51:20.675][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-03-27 22:51:20.676][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-03-27 22:51:20.678][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-03-27 22:51:20.681][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2024-03-27 22:51:20.689][biodb::testThat]
biodb.INFO [2024-03-27 22:51:20.691][biodb::testThat] Running test function test.old.accession (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2024-03-27 22:51:20.692][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-27 22:51:20.693][biodb::testThat]
biodb.DEBUG[2024-03-27 22:51:20.695][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-03-27 22:51:20.697][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-03-27 22:51:20.699][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 22:51:20.701][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-03-27 22:51:20.703][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-03-27 22:51:20.705][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-27 22:51:20.708][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-03-27 22:51:20.709][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-03-27 22:51:20.710][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-03-27 22:51:20.712][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-03-27 22:51:20.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-27 22:51:20.715][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:20.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:20.723][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:20.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:20.726][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:20.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-27 22:51:20.731][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:20.732][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:20.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.734][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:20.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:20.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.741][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 22:51:20.742][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 22:51:20.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.745][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.746][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 22:51:20.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 22:51:20.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.757][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 22:51:20.759][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 22:51:20.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.761][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.763][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 22:51:20.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 22:51:20.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.768][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 22:51:20.769][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 22:51:20.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.772][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.774][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 22:51:20.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 22:51:20.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.779][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 22:51:20.781][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 22:51:20.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.783][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.784][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 22:51:20.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 22:51:20.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.790][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 22:51:20.791][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 22:51:20.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.793][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 22:51:20.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 22:51:20.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.800][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:51:20.801][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:51:20.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.804][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.805][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:51:20.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:51:20.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.810][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:51:20.812][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:51:20.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.814][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.816][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:51:20.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:51:20.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.821][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:51:20.822][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:51:20.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.824][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.826][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:51:20.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:51:20.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.831][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:51:20.832][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:51:20.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.835][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.836][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:51:20.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:51:20.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.841][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 22:51:20.843][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 22:51:20.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.845][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.846][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 22:51:20.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 22:51:20.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.851][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 22:51:20.853][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 22:51:20.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.855][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.857][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 22:51:20.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 22:51:20.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.862][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 22:51:20.863][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:51:20.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.865][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.867][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 22:51:20.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:51:20.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.872][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:51:20.873][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:51:20.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.876][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:51:20.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:51:20.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.882][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:51:20.883][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:51:20.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.886][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.887][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:51:20.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:51:20.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.892][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:20.893][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:20.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.896][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.897][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:20.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:20.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.902][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 22:51:20.903][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 22:51:20.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.906][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.907][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 22:51:20.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 22:51:20.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.912][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-03-27 22:51:20.914][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 22:51:20.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.916][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.917][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-03-27 22:51:20.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 22:51:20.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:20.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:20.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:20.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:20.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:20.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:20.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.943][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 22:51:20.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 22:51:20.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.948][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 22:51:20.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 22:51:20.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.953][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 22:51:20.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 22:51:20.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.957][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 22:51:20.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 22:51:20.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.962][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 22:51:20.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 22:51:20.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.967][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 22:51:20.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 22:51:20.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 22:51:20.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 22:51:20.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 22:51:20.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 22:51:20.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 22:51:20.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 22:51:20.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 22:51:20.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 22:51:20.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 22:51:20.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 22:51:20.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:20.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:20.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 22:51:20.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 22:51:20.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.002][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:51:21.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:51:21.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.006][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:51:21.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:51:21.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.011][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:51:21.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:51:21.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.016][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:51:21.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:51:21.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.021][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:51:21.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:51:21.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.026][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:51:21.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:51:21.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.031][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-27 22:51:21.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 22:51:21.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.036][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-27 22:51:21.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 22:51:21.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.041][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-27 22:51:21.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 22:51:21.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.046][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:21.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:21.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.050][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:21.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:21.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.055][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:21.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:21.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.060][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 22:51:21.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 22:51:21.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.065][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 22:51:21.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 22:51:21.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.070][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 22:51:21.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 22:51:21.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.075][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 22:51:21.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 22:51:21.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.080][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 22:51:21.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 22:51:21.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.084][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 22:51:21.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 22:51:21.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.089][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 22:51:21.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:51:21.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.100][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 22:51:21.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:51:21.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.105][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 22:51:21.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:51:21.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.109][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:51:21.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:51:21.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.114][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:51:21.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:51:21.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.119][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:51:21.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:51:21.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:51:21.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:51:21.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.129][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:51:21.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:51:21.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:51:21.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:51:21.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.139][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:51:21.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:51:21.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.144][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:51:21.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:51:21.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.149][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:51:21.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:51:21.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.154][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:51:21.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:51:21.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.159][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:51:21.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:51:21.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.164][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:51:21.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:51:21.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.169][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 22:51:21.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 22:51:21.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.174][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 22:51:21.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 22:51:21.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.179][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 22:51:21.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 22:51:21.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.184][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 22:51:21.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 22:51:21.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.189][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 22:51:21.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 22:51:21.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.194][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 22:51:21.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 22:51:21.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.199][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-03-27 22:51:21.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:51:21.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.204][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 22:51:21.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:51:21.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.209][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 22:51:21.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:51:21.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.214][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 22:51:21.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:51:21.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.219][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-03-27 22:51:21.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:51:21.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.225][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:51:21.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:51:21.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.229][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:51:21.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:51:21.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.234][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:51:21.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:51:21.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.239][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:51:21.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:51:21.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.244][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:51:21.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:51:21.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.249][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 22:51:21.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 22:51:21.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.254][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 22:51:21.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 22:51:21.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:21.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:21.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.270][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 22:51:21.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 22:51:21.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:21.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:21.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:21.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:21.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:21.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:21.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:21.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:21.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:21.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:21.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:21.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:21.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-27 22:51:21.305][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-03-27 22:51:21.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:21.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:21.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:21.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:21.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:21.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:21.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:21.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:21.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-03-27 22:51:21.330][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-03-27 22:51:21.332][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-03-27 22:51:21.333][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-03-27 22:51:21.334][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-03-27 22:51:21.335][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:21.336][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:21.337][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:21.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:21.340][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:21.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-03-27 22:51:21.346][biodb::testContext]
biodb.INFO [2024-03-27 22:51:21.347][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-27 22:51:21.348][biodb::testContext] Test context - Test search of entries
biodb.INFO [2024-03-27 22:51:21.349][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-27 22:51:21.350][biodb::testContext]
biodb.INFO [2024-03-27 22:51:21.357][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.10.0.
biodb.DEBUG[2024-03-27 22:51:21.359][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.18-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-03-27 22:51:21.365][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-27 22:51:21.366][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-03-27 22:51:21.367][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-03-27 22:51:21.369][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:21.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:21.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:21.372][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-03-27 22:51:21.373][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-03-27 22:51:21.375][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:21.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:21.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:21.378][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-03-27 22:51:21.379][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-03-27 22:51:21.381][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:21.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:21.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:21.384][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-03-27 22:51:21.385][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-03-27 22:51:21.387][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-03-27 22:51:21.388][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:21.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:21.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:21.391][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-03-27 22:51:21.392][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-03-27 22:51:21.394][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-03-27 22:51:21.395][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:21.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:21.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:21.398][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-03-27 22:51:21.399][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-03-27 22:51:21.401][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:21.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:21.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:21.404][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-03-27 22:51:21.405][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-03-27 22:51:21.406][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-03-27 22:51:21.408][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:21.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:21.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:21.411][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-03-27 22:51:21.412][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-03-27 22:51:21.413][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:21.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:21.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:21.417][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-03-27 22:51:21.418][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-03-27 22:51:21.419][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-03-27 22:51:21.420][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:21.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:21.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:21.424][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-03-27 22:51:21.425][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-03-27 22:51:21.426][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-03-27 22:51:21.427][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-03-27 22:51:21.429][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-03-27 22:51:21.430][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-03-27 22:51:21.431][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:21.432][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:21.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:21.434][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-03-27 22:51:21.436][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-03-27 22:51:21.437][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:21.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:21.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:21.440][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-03-27 22:51:21.447][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-03-27 22:51:21.449][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:21.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:21.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:21.452][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-03-27 22:51:21.454][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-03-27 22:51:21.455][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:21.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:21.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:21.458][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-03-27 22:51:21.459][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-03-27 22:51:21.461][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:21.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:21.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:21.464][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-03-27 22:51:21.465][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-03-27 22:51:21.466][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:21.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:21.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:21.470][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-03-27 22:51:21.471][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-03-27 22:51:21.475][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-03-27 22:51:21.476][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:21.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:21.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:21.480][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-03-27 22:51:21.482][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-03-27 22:51:21.484][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-03-27 22:51:21.485][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:21.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:21.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:21.490][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-03-27 22:51:21.493][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-27 22:51:21.495][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-03-27 22:51:21.497][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-27 22:51:21.499][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-27 22:51:21.500][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-27 22:51:21.502][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-27 22:51:21.504][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-27 22:51:21.506][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-27 22:51:21.507][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-03-27 22:51:21.509][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-27 22:51:21.511][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-27 22:51:21.513][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-03-27 22:51:21.514][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-27 22:51:21.516][self$setPropertyValue]
biodb.DEBUG[2024-03-27 22:51:21.518][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-27 22:51:21.520][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-27 22:51:21.520][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-27 22:51:21.520][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-27 22:51:21.520][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-03-27 22:51:21.520][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-03-27 22:51:21.521][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-27 22:51:21.523][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 22:51:21.525][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 22:51:21.526][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-27 22:51:21.528][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 22:51:21.530][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 22:51:21.531][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-27 22:51:21.533][self$setPropertyValue]
biodb.DEBUG[2024-03-27 22:51:21.535][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-27 22:51:21.536][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-27 22:51:21.538][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-27 22:51:21.540][self$setPropertyValue]
biodb.DEBUG[2024-03-27 22:51:21.542][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-03-27 22:51:21.545][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-27 22:51:21.547][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-03-27 22:51:21.548][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-27 22:51:21.550][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-27 22:51:21.552][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-27 22:51:21.554][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-27 22:51:21.555][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-27 22:51:21.557][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-27 22:51:21.558][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-03-27 22:51:21.559][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-27 22:51:21.560][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-27 22:51:21.562][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-03-27 22:51:21.563][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-27 22:51:21.564][self$setPropertyValue]
biodb.DEBUG[2024-03-27 22:51:21.565][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-27 22:51:21.566][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-27 22:51:21.566][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-27 22:51:21.566][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-27 22:51:21.566][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-03-27 22:51:21.566][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-03-27 22:51:21.568][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-27 22:51:21.569][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 22:51:21.570][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 22:51:21.571][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-27 22:51:21.573][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 22:51:21.574][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 22:51:21.575][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-27 22:51:21.576][self$setPropertyValue]
biodb.DEBUG[2024-03-27 22:51:21.577][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-27 22:51:21.579][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-27 22:51:21.580][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-27 22:51:21.581][self$setPropertyValue]
biodb.DEBUG[2024-03-27 22:51:21.582][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-03-27 22:51:21.584][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-27 22:51:21.586][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-03-27 22:51:21.587][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-27 22:51:21.588][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-27 22:51:21.589][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-27 22:51:21.590][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-27 22:51:21.592][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-27 22:51:21.593][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-27 22:51:21.594][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-03-27 22:51:21.595][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-27 22:51:21.597][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-03-27 22:51:21.598][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-03-27 22:51:21.599][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-27 22:51:21.600][self$setPropertyValue]
biodb.DEBUG[2024-03-27 22:51:21.601][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-27 22:51:21.603][self$setPropertyValue]
biodb.DEBUG[2024-03-27 22:51:21.604][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-27 22:51:21.605][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 22:51:21.606][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 22:51:21.607][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-27 22:51:21.608][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 22:51:21.610][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 22:51:21.611][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-27 22:51:21.612][self$setPropertyValue]
biodb.DEBUG[2024-03-27 22:51:21.613][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-27 22:51:21.614][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-27 22:51:21.615][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-27 22:51:21.617][self$setPropertyValue]
biodb.DEBUG[2024-03-27 22:51:21.618][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-03-27 22:51:21.620][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-27 22:51:21.621][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-03-27 22:51:21.622][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-27 22:51:21.624][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-27 22:51:21.625][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-27 22:51:21.626][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-27 22:51:21.627][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-27 22:51:21.628][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-27 22:51:21.630][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-03-27 22:51:21.631][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-27 22:51:21.637][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-03-27 22:51:21.639][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-03-27 22:51:21.641][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-27 22:51:21.642][self$setPropertyValue]
biodb.DEBUG[2024-03-27 22:51:21.643][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-27 22:51:21.644][self$setPropertyValue]
biodb.DEBUG[2024-03-27 22:51:21.646][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-27 22:51:21.647][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 22:51:21.648][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 22:51:21.649][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-27 22:51:21.650][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 22:51:21.651][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 22:51:21.653][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-27 22:51:21.654][self$setPropertyValue]
biodb.DEBUG[2024-03-27 22:51:21.655][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-27 22:51:21.656][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-27 22:51:21.657][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-27 22:51:21.659][self$setPropertyValue]
biodb.DEBUG[2024-03-27 22:51:21.660][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-27 22:51:21.661][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:21.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:21.664][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:21.665][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:21.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:21.667][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:21.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:21.669][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:21.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:21.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:21.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:21.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:21.675][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:21.676][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:21.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:21.678][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:21.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:21.681][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:21.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:21.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:21.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:21.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:21.687][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:21.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:21.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:21.691][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:21.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:21.693][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:21.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:21.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:21.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:21.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:21.700][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:21.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:21.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:21.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:21.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:21.706][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:21.707][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:21.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:21.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:21.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:21.712][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:21.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:21.714][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:21.715][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:21.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:21.717][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:21.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:21.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:21.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:21.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:21.723][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:21.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:21.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:21.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:21.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:21.729][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:21.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:21.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:21.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:21.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:21.734][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:21.735][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:21.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:21.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:21.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:21.740][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:21.742][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:21.743][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:21.744][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:21.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:21.746][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:21.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:21.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:21.750][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:21.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:21.752][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:21.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:21.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:21.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:21.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:21.758][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:21.759][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:21.760][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:21.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:21.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:21.763][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-03-27 22:51:21.765][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-03-27 22:51:21.767][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-03-27 22:51:21.768][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-03-27 22:51:21.770][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-03-27 22:51:21.772][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-03-27 22:51:21.773][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-03-27 22:51:21.775][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-03-27 22:51:21.777][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-03-27 22:51:21.779][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-03-27 22:51:21.781][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-03-27 22:51:21.784][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-03-27 22:51:21.787][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-03-27 22:51:21.789][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-03-27 22:51:21.791][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-03-27 22:51:21.793][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-03-27 22:51:21.795][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-03-27 22:51:21.797][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-03-27 22:51:21.798][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-03-27 22:51:21.800][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-03-27 22:51:21.802][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-03-27 22:51:21.803][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-03-27 22:51:21.805][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-03-27 22:51:21.812][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-03-27 22:51:21.814][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-03-27 22:51:21.816][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-03-27 22:51:21.817][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-03-27 22:51:21.819][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-03-27 22:51:21.821][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-03-27 22:51:21.822][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-03-27 22:51:21.824][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-03-27 22:51:21.825][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-03-27 22:51:21.827][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-03-27 22:51:21.828][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-03-27 22:51:21.830][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-03-27 22:51:21.832][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-03-27 22:51:21.833][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-03-27 22:51:21.835][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-03-27 22:51:21.836][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-03-27 22:51:21.838][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-03-27 22:51:21.840][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-03-27 22:51:21.842][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-03-27 22:51:21.845][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-03-27 22:51:21.847][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-03-27 22:51:21.849][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-03-27 22:51:21.850][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-03-27 22:51:21.852][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-03-27 22:51:21.853][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-03-27 22:51:21.855][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-03-27 22:51:21.857][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-03-27 22:51:21.858][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-03-27 22:51:21.860][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-03-27 22:51:21.861][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-03-27 22:51:21.863][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-03-27 22:51:21.865][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-03-27 22:51:21.866][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-03-27 22:51:21.868][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-03-27 22:51:21.870][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-03-27 22:51:21.871][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-03-27 22:51:21.873][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-03-27 22:51:21.874][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-03-27 22:51:21.876][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-03-27 22:51:21.877][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-03-27 22:51:21.879][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-03-27 22:51:21.881][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-03-27 22:51:21.882][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-03-27 22:51:21.884][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-03-27 22:51:21.885][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-03-27 22:51:21.887][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-03-27 22:51:21.889][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-03-27 22:51:21.890][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-03-27 22:51:21.892][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-03-27 22:51:21.893][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-03-27 22:51:21.895][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-03-27 22:51:21.897][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-03-27 22:51:21.898][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-03-27 22:51:21.900][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-03-27 22:51:21.902][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-03-27 22:51:21.903][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-03-27 22:51:21.905][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-03-27 22:51:21.906][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-03-27 22:51:21.908][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-03-27 22:51:21.910][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-03-27 22:51:21.911][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-03-27 22:51:21.914][initialize] This is biodb version 1.10.0.
biodb.DEBUG[2024-03-27 22:51:21.915][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-27 22:51:21.916][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:21.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:21.918][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:21.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:21.921][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:21.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:21.923][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:21.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:21.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:21.926][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:21.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:21.929][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:21.930][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:21.931][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:21.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:21.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:21.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:21.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:21.937][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:21.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:21.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:21.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:21.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:21.942][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:21.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:21.944][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:21.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:21.947][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:21.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:21.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:21.950][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:21.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:21.952][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:21.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:21.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:21.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:21.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:21.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:21.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:21.961][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:21.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:21.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:21.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:21.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:21.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:21.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:21.975][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:21.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:21.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:21.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:21.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:21.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:21.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:21.983][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:21.984][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:21.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:21.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:21.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:21.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:21.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:21.991][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:21.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:21.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:21.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:21.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:21.997][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:21.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:21.999][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:22.000][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:22.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:22.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:22.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:22.004][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:22.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:22.007][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:22.008][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:22.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:22.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:22.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:22.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:22.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:22.015][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:22.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:22.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:22.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:22.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:22.020][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:22.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:22.023][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:22.024][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:22.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:22.026][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:22.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:22.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:22.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:22.031][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:22.032][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:22.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:22.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:22.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:22.036][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:22.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:22.039][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:22.040][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:22.041][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:22.042][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:22.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:22.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:22.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:22.047][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:22.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:22.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:22.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:22.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:22.052][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:22.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:22.055][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 22:51:22.056][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:22.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:22.058][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:22.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:22.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:22.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:22.064][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.18-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-03-27 22:51:22.066][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-03-27 22:51:22.069][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-27 22:51:22.070][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-03-27 22:51:22.071][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-27 22:51:22.072][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-27 22:51:22.074][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-03-27 22:51:22.075][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-03-27 22:51:22.076][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-03-27 22:51:22.077][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-27 22:51:22.079][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-03-27 22:51:22.080][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-27 22:51:22.081][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-27 22:51:22.082][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-03-27 22:51:22.084][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-27 22:51:22.085][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-03-27 22:51:22.085][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-03-27 22:51:22.085][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-03-27 22:51:22.085][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-03-27 22:51:22.085][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-03-27 22:51:22.085][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-03-27 22:51:22.085][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-03-27 22:51:22.085][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-03-27 22:51:22.085][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-03-27 22:51:22.085][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-03-27 22:51:22.085][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-03-27 22:51:22.085][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-03-27 22:51:22.085][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-03-27 22:51:22.085][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-03-27 22:51:22.085][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-03-27 22:51:22.085][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-03-27 22:51:22.085][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-03-27 22:51:22.085][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-03-27 22:51:22.086][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-03-27 22:51:22.088][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-27 22:51:22.088][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-03-27 22:51:22.088][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-03-27 22:51:22.089][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-03-27 22:51:22.090][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 22:51:22.091][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 22:51:22.092][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-27 22:51:22.094][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 22:51:22.095][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 22:51:22.096][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-27 22:51:22.097][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-03-27 22:51:22.097][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-03-27 22:51:22.098][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-27 22:51:22.099][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-27 22:51:22.101][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-03-27 22:51:22.102][self$setPropertyValue]
biodb.DEBUG[2024-03-27 22:51:22.103][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-03-27 22:51:22.105][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-03-27 22:51:22.107][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-03-27 22:51:22.109][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-03-27 22:51:22.110][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-03-27 22:51:22.114][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-03-27 22:51:22.115][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-03-27 22:51:22.116][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-03-27 22:51:22.118][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-03-27 22:51:22.120][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-27 22:51:22.121][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-27 22:51:22.123][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-03-27 22:51:22.124][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-03-27 22:51:22.125][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-03-27 22:51:22.125][self$setPropertyValue] Setting property "urls" to "F:/biocbuild/bbs-3.18-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-03-27 22:51:22.127][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-27 22:51:22.128][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-27 22:51:22.129][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-03-27 22:51:22.130][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-03-27 22:51:22.131][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-03-27 22:51:22.133][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-03-27 22:51:22.140][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-27 22:51:22.142][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-27 22:51:22.144][private$addConnectorRules] Create new rule for URL "F:/biocbuild/bbs-3.18-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-03-27 22:51:22.145][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-27 22:51:22.147][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-03-27 22:51:22.149][biodb::testThat]
biodb.INFO [2024-03-27 22:51:22.150][biodb::testThat] Running test function test.searchMultipleWordsInDescription (" We can search for multiple words inside description field. ").
biodb.INFO [2024-03-27 22:51:22.151][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-27 22:51:22.152][biodb::testThat]
biodb.DEBUG[2024-03-27 22:51:22.155][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-03-27 22:51:22.156][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-03-27 22:51:22.157][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-03-27 22:51:22.162][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 22:51:22.164][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 22:51:22.166][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-03-27 22:51:22.167][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 22:51:22.169][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-03-27 22:51:22.170][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-03-27 22:51:22.172][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-03-27 22:51:22.173][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-03-27 22:51:22.174][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-03-27 22:51:22.176][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-03-27 22:51:22.177][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2024-03-27 22:51:22.179][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-03-27 22:51:22.180][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-03-27 22:51:22.183][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 22:51:22.185][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-03-27 22:51:22.187][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-03-27 22:51:22.189][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-27 22:51:22.215][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-03-27 22:51:22.217][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-03-27 22:51:22.219][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-03-27 22:51:22.220][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-03-27 22:51:22.222][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-27 22:51:22.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:22.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:22.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:22.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:22.235][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:22.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-27 22:51:22.240][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:22.241][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:22.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.244][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:22.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:22.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.250][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 22:51:22.252][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 22:51:22.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.254][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.256][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 22:51:22.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 22:51:22.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.261][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 22:51:22.262][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 22:51:22.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.265][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.266][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 22:51:22.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 22:51:22.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.271][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 22:51:22.273][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 22:51:22.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.275][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.277][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 22:51:22.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 22:51:22.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.282][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 22:51:22.283][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 22:51:22.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.286][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 22:51:22.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 22:51:22.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.293][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 22:51:22.294][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 22:51:22.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.296][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 22:51:22.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 22:51:22.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.303][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:51:22.304][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:51:22.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.307][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.308][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:51:22.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:51:22.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.313][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:51:22.315][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:51:22.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.317][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.319][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:51:22.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:51:22.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.324][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:51:22.325][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:51:22.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.327][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.329][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:51:22.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:51:22.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.334][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:51:22.336][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:51:22.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.338][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.340][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:51:22.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:51:22.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.351][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 22:51:22.352][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 22:51:22.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.355][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.356][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 22:51:22.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 22:51:22.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.362][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 22:51:22.363][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 22:51:22.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.366][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.367][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 22:51:22.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 22:51:22.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.372][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 22:51:22.374][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:51:22.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.376][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.378][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 22:51:22.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:51:22.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.383][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:51:22.384][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:51:22.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.387][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:51:22.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:51:22.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.394][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:51:22.396][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:51:22.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.399][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.400][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:51:22.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:51:22.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.406][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:22.407][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:22.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.409][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.411][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:22.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:22.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.416][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 22:51:22.417][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 22:51:22.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.420][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.422][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 22:51:22.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 22:51:22.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.427][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-03-27 22:51:22.428][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 22:51:22.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.430][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.433][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-03-27 22:51:22.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 22:51:22.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:22.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:22.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:22.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:22.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:22.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:22.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.461][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 22:51:22.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 22:51:22.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.466][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 22:51:22.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 22:51:22.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.473][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 22:51:22.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 22:51:22.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.481][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 22:51:22.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 22:51:22.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.489][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 22:51:22.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 22:51:22.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.496][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 22:51:22.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 22:51:22.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 22:51:22.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 22:51:22.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 22:51:22.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 22:51:22.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 22:51:22.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 22:51:22.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 22:51:22.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 22:51:22.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 22:51:22.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 22:51:22.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 22:51:22.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 22:51:22.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.546][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:51:22.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:51:22.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.563][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:51:22.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:51:22.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.568][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:51:22.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:51:22.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.573][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:51:22.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:51:22.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.578][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:51:22.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:51:22.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.583][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:51:22.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:51:22.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.588][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-27 22:51:22.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 22:51:22.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.593][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-27 22:51:22.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 22:51:22.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.598][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-27 22:51:22.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 22:51:22.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.603][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:22.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:22.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.608][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:22.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:22.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.613][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:22.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:22.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.618][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 22:51:22.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 22:51:22.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.623][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 22:51:22.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 22:51:22.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.628][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 22:51:22.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 22:51:22.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.633][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 22:51:22.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 22:51:22.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.638][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 22:51:22.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 22:51:22.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.643][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 22:51:22.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 22:51:22.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.648][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 22:51:22.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:51:22.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.653][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 22:51:22.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:51:22.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.658][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 22:51:22.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:51:22.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.663][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:51:22.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:51:22.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.668][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:51:22.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:51:22.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.673][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:51:22.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:51:22.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.678][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:51:22.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:51:22.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.683][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:51:22.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:51:22.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.688][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:51:22.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:51:22.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.693][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:51:22.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:51:22.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.698][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:51:22.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:51:22.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.703][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:51:22.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:51:22.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.708][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:51:22.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:51:22.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.712][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:51:22.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:51:22.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.717][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:51:22.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:51:22.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.728][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 22:51:22.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 22:51:22.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.733][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 22:51:22.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 22:51:22.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.738][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 22:51:22.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 22:51:22.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.743][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 22:51:22.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 22:51:22.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.748][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 22:51:22.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 22:51:22.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.753][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 22:51:22.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 22:51:22.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.758][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-03-27 22:51:22.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:51:22.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.763][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 22:51:22.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:51:22.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.768][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 22:51:22.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:51:22.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.773][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 22:51:22.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:51:22.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.778][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-03-27 22:51:22.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:51:22.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.784][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:51:22.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:51:22.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.789][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:51:22.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:51:22.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.794][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:51:22.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:51:22.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.799][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:51:22.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:51:22.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.804][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:51:22.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:51:22.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.809][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 22:51:22.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 22:51:22.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.814][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 22:51:22.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 22:51:22.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:22.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:22.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.824][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 22:51:22.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 22:51:22.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:22.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:22.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:22.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:22.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:22.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:22.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:22.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:22.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:22.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:22.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:22.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:22.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-27 22:51:22.859][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-03-27 22:51:22.860][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:22.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:22.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.865][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:22.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:22.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.870][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:22.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:22.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.875][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:22.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:22.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-27 22:51:22.880][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-03-27 22:51:22.881][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-03-27 22:51:22.882][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-27 22:51:22.884][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:22.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:22.897][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:22.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:22.900][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:22.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:22.903][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-03-27 22:51:22.904][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-03-27 22:51:22.906][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 22:51:22.908][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-03-27 22:51:22.911][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-03-27 22:51:22.912][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-27 22:51:22.915][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-03-27 22:51:22.916][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-03-27 22:51:22.918][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-03-27 22:51:22.919][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-03-27 22:51:22.921][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-27 22:51:22.922][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:22.923][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:22.931][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:22.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:22.933][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:22.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-27 22:51:22.938][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:22.939][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:22.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.942][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:22.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:22.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.948][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 22:51:22.950][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 22:51:22.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.952][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.953][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 22:51:22.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 22:51:22.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.959][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 22:51:22.960][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 22:51:22.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.962][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.964][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 22:51:22.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 22:51:22.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.969][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 22:51:22.970][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 22:51:22.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.973][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.974][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 22:51:22.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 22:51:22.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.979][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 22:51:22.980][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 22:51:22.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.983][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 22:51:22.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 22:51:22.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.989][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 22:51:22.991][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 22:51:22.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.993][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:22.995][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 22:51:22.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 22:51:22.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:22.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.001][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:51:23.003][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:51:23.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.005][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.007][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:51:23.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:51:23.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.012][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:51:23.013][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:51:23.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.016][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.017][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:51:23.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:51:23.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.022][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:51:23.024][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:51:23.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.026][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.028][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:51:23.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:51:23.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.033][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:51:23.034][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:51:23.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.036][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.038][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:51:23.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:51:23.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.043][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 22:51:23.044][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 22:51:23.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.047][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.048][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 22:51:23.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 22:51:23.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.053][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 22:51:23.054][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 22:51:23.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.057][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.058][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 22:51:23.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 22:51:23.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.063][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 22:51:23.065][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:51:23.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.073][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.074][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 22:51:23.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:51:23.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.079][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:51:23.081][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:51:23.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.083][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:51:23.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:51:23.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.090][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:51:23.091][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:51:23.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.093][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.095][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:51:23.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:51:23.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.100][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:23.101][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:23.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.104][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.105][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:23.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:23.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.110][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 22:51:23.112][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 22:51:23.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.114][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.115][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 22:51:23.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 22:51:23.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.121][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-03-27 22:51:23.122][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 22:51:23.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.124][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.126][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-03-27 22:51:23.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 22:51:23.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:23.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:23.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:23.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:23.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:23.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:23.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.146][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 22:51:23.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 22:51:23.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.151][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 22:51:23.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 22:51:23.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.156][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 22:51:23.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 22:51:23.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.161][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 22:51:23.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 22:51:23.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.166][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 22:51:23.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 22:51:23.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.171][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 22:51:23.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 22:51:23.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 22:51:23.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 22:51:23.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 22:51:23.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 22:51:23.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 22:51:23.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 22:51:23.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 22:51:23.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 22:51:23.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 22:51:23.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 22:51:23.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 22:51:23.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 22:51:23.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.206][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:51:23.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:51:23.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.211][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:51:23.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:51:23.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.216][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:51:23.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 22:51:23.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.221][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:51:23.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:51:23.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.226][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:51:23.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:51:23.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.231][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:51:23.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 22:51:23.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.242][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-27 22:51:23.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 22:51:23.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.247][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-27 22:51:23.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 22:51:23.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.252][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-27 22:51:23.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 22:51:23.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.257][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:23.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:23.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.262][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:23.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:23.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.267][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:23.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:23.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.272][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 22:51:23.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 22:51:23.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.277][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 22:51:23.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 22:51:23.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.282][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 22:51:23.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 22:51:23.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.287][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 22:51:23.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 22:51:23.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.292][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 22:51:23.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 22:51:23.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.297][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 22:51:23.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 22:51:23.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.302][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 22:51:23.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:51:23.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.307][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 22:51:23.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:51:23.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.312][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 22:51:23.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:51:23.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.317][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:51:23.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:51:23.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.322][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:51:23.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:51:23.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.327][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:51:23.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 22:51:23.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:51:23.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:51:23.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:51:23.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:51:23.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:51:23.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 22:51:23.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.347][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:51:23.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:51:23.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.352][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:51:23.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:51:23.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.358][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:51:23.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:51:23.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.364][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:51:23.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:51:23.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.370][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:51:23.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:51:23.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.375][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:51:23.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 22:51:23.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.380][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 22:51:23.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 22:51:23.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.386][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 22:51:23.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 22:51:23.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.391][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 22:51:23.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 22:51:23.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.398][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 22:51:23.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 22:51:23.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.404][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 22:51:23.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 22:51:23.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.415][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 22:51:23.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 22:51:23.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.420][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-03-27 22:51:23.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:51:23.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.425][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 22:51:23.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:51:23.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.430][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 22:51:23.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:51:23.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.438][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 22:51:23.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:51:23.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.446][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-03-27 22:51:23.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 22:51:23.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.455][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:51:23.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:51:23.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.462][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:51:23.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:51:23.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.467][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:51:23.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:51:23.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.472][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:51:23.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:51:23.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.477][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 22:51:23.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 22:51:23.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.484][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 22:51:23.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 22:51:23.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.492][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 22:51:23.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 22:51:23.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:23.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:23.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.506][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 22:51:23.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 22:51:23.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:23.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:23.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:23.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:23.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:23.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:23.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:23.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:23.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:23.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:23.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 22:51:23.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 22:51:23.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-27 22:51:23.546][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-03-27 22:51:23.548][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:23.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:23.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.553][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:23.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:23.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.558][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:23.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:23.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.563][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:23.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:23.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-27 22:51:23.568][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-03-27 22:51:23.569][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2024-03-27 22:51:23.571][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-27 22:51:23.572][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:23.573][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:23.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:23.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:23.583][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:23.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:23.589][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-03-27 22:51:23.591][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-03-27 22:51:23.592][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-03-27 22:51:23.595][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 22:51:23.597][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 22:51:23.599][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-03-27 22:51:23.601][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 22:51:23.602][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-03-27 22:51:23.609][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-03-27 22:51:23.610][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-03-27 22:51:23.612][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-03-27 22:51:23.613][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-03-27 22:51:23.615][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-03-27 22:51:23.616][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-03-27 22:51:23.618][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:23.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:23.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.623][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:23.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:23.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.628][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:23.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:23.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.633][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:23.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:23.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.638][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:23.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:23.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.643][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:23.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:23.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.648][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:23.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:23.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-27 22:51:23.653][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-03-27 22:51:23.654][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-03-27 22:51:23.656][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-27 22:51:23.657][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:23.658][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:23.665][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:23.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:23.668][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:23.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-27 22:51:23.670][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:23.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:23.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.676][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:23.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:23.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.681][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:23.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:23.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.686][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:23.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:23.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.691][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:23.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:23.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.696][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:23.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:23.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.701][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:23.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:23.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-27 22:51:23.706][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-03-27 22:51:23.708][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-03-27 22:51:23.709][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-27 22:51:23.710][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:23.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:23.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:23.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:23.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:23.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 22:51:23.735][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-03-27 22:51:23.738][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-03-27 22:51:23.740][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-03-27 22:51:23.743][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 22:51:23.747][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 22:51:23.750][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-03-27 22:51:23.753][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 22:51:23.755][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-03-27 22:51:23.758][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-03-27 22:51:23.760][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-03-27 22:51:23.762][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-03-27 22:51:23.763][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-03-27 22:51:23.764][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-03-27 22:51:23.766][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-03-27 22:51:23.768][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:23.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:23.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.773][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:23.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:23.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.778][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:23.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:23.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.783][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:23.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:23.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.788][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:23.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:23.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.793][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:23.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:23.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.804][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:23.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:23.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-27 22:51:23.810][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-03-27 22:51:23.811][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2024-03-27 22:51:23.812][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-27 22:51:23.813][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:23.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:23.822][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:23.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:23.824][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:23.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-27 22:51:23.827][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:23.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:23.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.832][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:23.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:23.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.837][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:23.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:23.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.842][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:23.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:23.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.847][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:23.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:23.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.853][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:23.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:23.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 22:51:23.858][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 22:51:23.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 22:51:23.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 22:51:23.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-27 22:51:23.863][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-03-27 22:51:23.864][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-03-27 22:51:23.865][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-27 22:51:23.867][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:23.868][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:23.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:23.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:23.877][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:23.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-03-27 22:51:23.888][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-03-27 22:51:23.890][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-03-27 22:51:23.891][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-03-27 22:51:23.892][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-03-27 22:51:23.893][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 22:51:23.894][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 22:51:23.896][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 22:51:23.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 22:51:23.898][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 22:51:23.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
>
> proc.time()
user system elapsed
12.40 0.98 96.20