Back to Multiple platform build/check report for BioC 3.18: simplified long |
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This page was generated on 2024-03-29 11:36:30 -0400 (Fri, 29 Mar 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4669 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" | 4404 |
merida1 | macOS 12.7.1 Monterey | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4427 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 2253/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Xeva 1.18.0 (landing page) Benjamin Haibe-Kains
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson1 | macOS 13.6.1 Ventura / arm64 | see weekly results here | ||||||||||||
To the developers/maintainers of the Xeva package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Xeva.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: Xeva |
Version: 1.18.0 |
Command: /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:Xeva.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings Xeva_1.18.0.tar.gz |
StartedAt: 2024-03-28 03:50:16 -0400 (Thu, 28 Mar 2024) |
EndedAt: 2024-03-28 03:55:00 -0400 (Thu, 28 Mar 2024) |
EllapsedTime: 283.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: Xeva.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:Xeva.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings Xeva_1.18.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/Xeva.Rcheck’ * using R version 4.3.3 (2024-02-29) * using platform: x86_64-pc-linux-gnu (64-bit) * R was compiled by gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 * running under: Ubuntu 22.04.4 LTS * using session charset: UTF-8 * checking for file ‘Xeva/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘Xeva’ version ‘1.18.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘Xeva’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... NOTE Note: found 31 marked UTF-8 strings * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘Xeva.Rnw’ using ‘UTF-8’... OK NONE * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.18-bioc/meat/Xeva.Rcheck/00check.log’ for details.
Xeva.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD INSTALL Xeva ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.18-bioc/R/site-library’ * installing *source* package ‘Xeva’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Xeva)
Xeva.Rcheck/Xeva-Ex.timings
name | user | system | elapsed | |
ABC | 0.004 | 0.000 | 0.004 | |
AUC | 0.013 | 0.004 | 0.017 | |
TGI | 0 | 0 | 0 | |
addExperimentalDesign | 0.096 | 0.004 | 0.100 | |
angle | 0.007 | 0.000 | 0.007 | |
batchInfo | 0.108 | 0.004 | 0.112 | |
createXevaSet | 0.086 | 0.008 | 0.186 | |
dosePlot | 0.304 | 0.040 | 0.343 | |
downloadXevaSet | 0.119 | 0.016 | 0.783 | |
drugInform | 0.124 | 0.000 | 0.123 | |
drugSensitivitySig | 0.307 | 0.028 | 0.335 | |
getExperiment | 0.126 | 0.012 | 0.139 | |
getMolecularProfiles | 0.095 | 0.000 | 0.095 | |
lmm | 0.070 | 0.008 | 0.078 | |
mRECIST | 0.001 | 0.000 | 0.002 | |
modelInfo | 0.099 | 0.000 | 0.099 | |
plotPDX | 1.312 | 0.092 | 1.404 | |
plotmRECIST | 2.646 | 0.244 | 2.890 | |
response | 0.123 | 0.004 | 0.127 | |
selectModelIds | 0.143 | 0.000 | 0.144 | |
sensitivity | 0.097 | 0.000 | 0.098 | |
setResponse | 1.924 | 0.124 | 2.048 | |
slope | 0.006 | 0.003 | 0.009 | |
subsetXeva | 0.173 | 0.000 | 0.173 | |
summarizeMolecularProfiles | 0.124 | 0.003 | 0.127 | |
summarizeResponse | 0.169 | 0.000 | 0.169 | |
waterfall | 0.724 | 0.020 | 0.743 | |