Mustafa Erhan Ozer
| Snapshot Date: 2024-03-27 14:05:05 -0400 (Wed, 27 Mar 2024) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_18 |
| git_last_commit: e42b83d |
| git_last_commit_date: 2024-01-08 13:29:46 -0400 (Mon, 08 Jan 2024) |
| Back to Multiple platform build/check report for BioC 3.18: simplified long |
|
This page was generated on 2024-03-29 11:37:23 -0400 (Fri, 29 Mar 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4669 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" | 4404 |
| merida1 | macOS 12.7.1 Monterey | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4427 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2086/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.2.8 (landing page) Mustafa Erhan Ozer
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.2.8 |
| Command: F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=F:\biocbuild\bbs-3.18-bioc\R\library --no-vignettes --timings SVMDO_1.2.8.tar.gz |
| StartedAt: 2024-03-28 05:43:39 -0400 (Thu, 28 Mar 2024) |
| EndedAt: 2024-03-28 05:49:00 -0400 (Thu, 28 Mar 2024) |
| EllapsedTime: 321.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=F:\biocbuild\bbs-3.18-bioc\R\library --no-vignettes --timings SVMDO_1.2.8.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'F:/biocbuild/bbs-3.18-bioc/meat/SVMDO.Rcheck'
* using R version 4.3.3 (2024-02-29 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
gcc.exe (GCC) 12.3.0
GNU Fortran (GCC) 12.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'SVMDO/DESCRIPTION' ... OK
* this is package 'SVMDO' version '1.2.8'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SVMDO' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.18-bioc/R/library' * installing *source* package 'SVMDO' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading `shiny::dataTableOutput()` is deprecated as of shiny 1.8.1. Please use `DT::DTOutput()` instead. See <https://rstudio.github.io/DT/shiny.html> for more information. ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.3.3 (2024-02-29 ucrt) -- "Angel Food Cake"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 60386,84300,23530,5196,80267,2767
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 114899,517,22868,9388,325,9377
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3423,4684,55829,3091,3676,84987
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54901,51422,87178,8788,6391,27329
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8665,84063,102,5193,2495,112609
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3480,3803,26191,84447,1351,1147
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 239,2786,51478,54575,25821,196385
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2835,11255,6890,7424,5360,10911
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84868,2835,5571,3778,2395,6550
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23654,3155,5276,3060,6608,3760
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10845,3992,51119,3636,3074,54796
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1348,5538,10250,4137,384,10559
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 81570,4779,4868,5565,55699,9369
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5160,8202,54600,38,644096,116085
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2113,6609,131118,1355,1644,6576
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54106,2787,821,2647,5245,949
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4852,5972,3980,6095,4323,257313
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5257,6616,1051,4654,5631,4556
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3502,3087,1356,657,51181,7025
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 138050,29881,3394,5919,189,79944
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2701,3813,158,1316,2487,2517
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2740,10116,6721,4547,79087,5116
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3712,5345,6748,50639,10845,125988
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 253943,4535,9965,23564,56922,1548
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4233,66036,496,7351,3417,205327
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4891,999,10379,9076,4160,56997
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3423,4868,617,585,445,9759
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7915,55572,9514,4891,7177,9759
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56922,8764,57678,3703,4357,1812
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5740,10102,653,2395,11266,640
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 779,8228,6602,25915,79585,5256
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5370,137682,1277,344,10886,10269
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7099,11255,10116,5162,3280,476
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406913,4828,407004,3833,3385,5019
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 160428,2539,6448,2547,26060,6406
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 797,6927,9514,367,51106,3931
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2992,56938,9941,8740,4153,84902
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5095,51458,364,8218,1520,1435
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 549,823,941,3717,9672,1337
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 50484,5631,3091,5214,793,10644
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5370,1646,151,10580,1558,2952
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51649,7430,5465,50814,112609,5499
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3033,19,55600,9374,1234,3054
--> return NULL...
No gene sets have size between 10 and 500 ...
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11200,19,3553,3674,6514,338328
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3643,1606,6007,255308,1737,3304
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 104909134,3815,4889,4855,509,7019
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3638,7325,116519,3283,2784,3440
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3945,3640,2109,2184,1992,5261
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54931,8560,4035,51738,2793,5715
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3991,10644,2135,3630,3489,11095
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5741,3099,5798,51024,197322,4489
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 107075310,948,4792,84833,54802,2109
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9518,10580,1508,3312,3054,109
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6535,9507,5631,1401,5122,7942
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8856,6748,3482,81034,1436,54331
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 498,1601,50639,316,129787,5193
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 30009,3075,55805,3425,111,3406
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7076,5618,1508,4846,1893,111
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2746,2161,7018,1051,5662,4684
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6531,7408,8799,11183,54331,2348
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2314,635,6009,686,211,332
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3784,79087,55788,2787,57761,6097
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3980,51555,4353,6696,5027,90480
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2321,6530,23410,5257,2713,2512
--> return NULL...
No gene sets have size between 10 and 500 ...
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 842,4353,55486,943,7132,2582
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406906,6821,6555,6343,2310,407008
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4129,4124,1573,7253,118,1327
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84340,3663,2235,9498,6182,5255
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6462,3157,3690,55343,432369,5571
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3934,2710,7376,5621,4760,1589
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1789,5618,2688,2119,6891,471
--> return NULL...
No gene sets have size between 10 and 500 ...
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54476,801,50615,26291,191,2055
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6236,178,54806,9429,8803,4089
--> return NULL...
No gene sets have size between 10 and 500 ...
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4255,10423,185,7036,943,3460
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7226,9314,79602,23175,1815,4795
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3725,4089,712,3636,197322,5091
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55967,836,1737,494324,23409,5715
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5473,5802,567,5662,100303755,8835
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8471,65993,344,6502,4060,84274
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
57.29 1.15 58.45
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.59 | 0.03 | 0.70 | |