Back to Multiple platform build/check report for BioC 3.18: simplified long |
|
This page was generated on 2024-03-29 11:36:18 -0400 (Fri, 29 Mar 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4669 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" | 4404 |
merida1 | macOS 12.7.1 Monterey | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4427 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1722/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
RESOLVE 1.4.0 (landing page) Luca De Sano
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson1 | macOS 13.6.1 Ventura / arm64 | see weekly results here | ||||||||||||
To the developers/maintainers of the RESOLVE package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RESOLVE.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: RESOLVE |
Version: 1.4.0 |
Command: /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:RESOLVE.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings RESOLVE_1.4.0.tar.gz |
StartedAt: 2024-03-28 01:56:07 -0400 (Thu, 28 Mar 2024) |
EndedAt: 2024-03-28 02:10:16 -0400 (Thu, 28 Mar 2024) |
EllapsedTime: 849.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: RESOLVE.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:RESOLVE.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings RESOLVE_1.4.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/RESOLVE.Rcheck’ * using R version 4.3.3 (2024-02-29) * using platform: x86_64-pc-linux-gnu (64-bit) * R was compiled by gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 * running under: Ubuntu 22.04.4 LTS * using session charset: UTF-8 * checking for file ‘RESOLVE/DESCRIPTION’ ... OK * this is package ‘RESOLVE’ version ‘1.4.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘RESOLVE’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed signaturesSignificance 119.839 0.372 120.211 signaturesCV 101.464 0.571 102.035 signaturesDecomposition 71.700 0.295 71.995 signaturesAssignment 41.156 0.618 41.775 getMNVCounts 11.769 0.520 12.289 getIDCounts 6.374 0.528 6.973 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘RESOLVE.rmd’ using ‘UTF-8’... OK NONE * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK
RESOLVE.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD INSTALL RESOLVE ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.18-bioc/R/site-library’ * installing *source* package ‘RESOLVE’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RESOLVE)
RESOLVE.Rcheck/tests/testthat.Rout
R version 4.3.3 (2024-02-29) -- "Angel Food Cake" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > Sys.setenv("R_TESTS" = "") > > library("testthat") > library("RESOLVE") > > test_check("RESOLVE") [ FAIL 0 | WARN 203 | SKIP 0 | PASS 6 ] [ FAIL 0 | WARN 203 | SKIP 0 | PASS 6 ] > > proc.time() user system elapsed 195.708 2.053 197.745
RESOLVE.Rcheck/RESOLVE-Ex.timings
name | user | system | elapsed | |
getCNCounts | 0.016 | 0.000 | 0.016 | |
getIDCounts | 6.374 | 0.528 | 6.973 | |
getMNVCounts | 11.769 | 0.520 | 12.289 | |
getSBSCounts | 1.376 | 0.230 | 4.290 | |
groupsCNPlot | 2.606 | 0.088 | 2.694 | |
groupsCXPlot | 1.813 | 0.015 | 1.828 | |
groupsIDPlot | 3.987 | 0.140 | 4.127 | |
groupsMNVPlot | 4.399 | 0.180 | 4.579 | |
groupsSBSPlot | 3.029 | 0.060 | 3.090 | |
patientsCNPlot | 1.137 | 0.004 | 1.141 | |
patientsCXPlot | 0.553 | 0.008 | 0.561 | |
patientsIDPlot | 1.697 | 0.008 | 1.705 | |
patientsMNVPlot | 1.135 | 0.004 | 1.140 | |
patientsSBSPlot | 0.787 | 0.000 | 0.787 | |
signaturesAssignment | 41.156 | 0.618 | 41.775 | |
signaturesCNPlot | 1.688 | 0.032 | 1.720 | |
signaturesCV | 101.464 | 0.571 | 102.035 | |
signaturesCXPlot | 0.799 | 0.012 | 0.811 | |
signaturesDecomposition | 71.700 | 0.295 | 71.995 | |
signaturesIDPlot | 2.528 | 0.024 | 2.552 | |
signaturesMNVPlot | 1.645 | 0.000 | 1.645 | |
signaturesSBSPlot | 1.108 | 0.004 | 1.112 | |
signaturesSignificance | 119.839 | 0.372 | 120.211 | |