| Back to Multiple platform build/check report for BioC 3.18: simplified long |
|
This page was generated on 2024-03-29 11:37:55 -0400 (Fri, 29 Mar 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4669 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" | 4404 |
| merida1 | macOS 12.7.1 Monterey | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4427 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1201/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MetaboSignal 1.32.1 (landing page) Andrea Rodriguez-Martinez
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | ERROR | |||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | ERROR | OK | |||||||||
| merida1 | macOS 12.7.1 Monterey / x86_64 | ERROR | OK | ERROR | OK | |||||||||
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the MetaboSignal package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MetaboSignal.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: MetaboSignal |
| Version: 1.32.1 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:MetaboSignal.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings MetaboSignal_1.32.1.tar.gz |
| StartedAt: 2024-03-28 05:04:25 -0400 (Thu, 28 Mar 2024) |
| EndedAt: 2024-03-28 05:04:30 -0400 (Thu, 28 Mar 2024) |
| EllapsedTime: 5.4 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: MetaboSignal.Rcheck |
| Warnings: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:MetaboSignal.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings MetaboSignal_1.32.1.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.18-bioc/meat/MetaboSignal.Rcheck’
* using R version 4.3.3 (2024-02-29)
* using platform: x86_64-apple-darwin20 (64-bit)
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MetaboSignal/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘MetaboSignal’ version ‘1.32.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MetaboSignal’ can be installed ... ERROR
Installation failed.
See ‘/Users/biocbuild/bbs-3.18-bioc/meat/MetaboSignal.Rcheck/00install.out’ for details.
* DONE
Status: 1 ERROR
See
‘/Users/biocbuild/bbs-3.18-bioc/meat/MetaboSignal.Rcheck/00check.log’
for details.
MetaboSignal.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL MetaboSignal ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library’ * installing *source* package ‘MetaboSignal’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Error: .onLoad failed in loadNamespace() for 'hpar', details: call: h(simpleError(msg, call)) error: error in evaluating the argument 'x' in selecting a method for function 'query': failed to connect reason: Scanner error: mapping values are not allowed in this context at line 3, column 13 Consider rerunning with 'localHub=TRUE' Execution halted ERROR: lazy loading failed for package ‘MetaboSignal’ * removing ‘/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/MetaboSignal’ * restoring previous ‘/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/MetaboSignal’