Back to Build/check report for BioC 3.18:   simplified   long
ABCDEFGHIJKL[M]NOPQRSTUVWXYZ

This page was generated on 2023-04-20 12:50:31 -0400 (Thu, 20 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_64R Under development (unstable) (2023-04-19 r84288) -- "Unsuffered Consequences" 3941
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for MIMOSA on nebbiolo2


To the developers/maintainers of the MIMOSA package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MIMOSA.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 1229/2223HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MIMOSA 1.37.1  (landing page)
Greg Finak
Snapshot Date: 2023-04-19 23:55:56 -0400 (Wed, 19 Apr 2023)
git_url: https://git.bioconductor.org/packages/MIMOSA
git_branch: devel
git_last_commit: 97cd3e1
git_last_commit_date: 2023-03-14 11:38:48 -0400 (Tue, 14 Mar 2023)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    ERROR  skipped

Summary

Package: MIMOSA
Version: 1.37.1
Command: /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MIMOSA
StartedAt: 2023-04-20 05:08:55 -0400 (Thu, 20 Apr 2023)
EndedAt: 2023-04-20 05:11:21 -0400 (Thu, 20 Apr 2023)
EllapsedTime: 145.8 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MIMOSA
###
##############################################################################
##############################################################################


* checking for file ‘MIMOSA/DESCRIPTION’ ... OK
* preparing ‘MIMOSA’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MIMOSA.Rnw’ using knitr
Error: processing vignette 'MIMOSA.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'MIMOSA.tex' failed.
LaTeX errors:
! TeX capacity exceeded, sorry [main memory size=5000000].
l.54157 ...31.744708 newll -15493.549876 oldll -15
                                                  461.805167
If you really absolutely need more capacity,
you can ask a wizard to enlarge me.
!  ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘MIMOSA.Rnw’

SUMMARY: processing the following file failed:
  ‘MIMOSA.Rnw’

Error: Vignette re-building failed.
Execution halted