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This page was generated on 2024-05-16 14:51:54 -0400 (Thu, 16 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" 4663
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 249/425HostnameOS / ArchINSTALLBUILDCHECK
MouseAgingData 1.1.0  (landing page)
Tram Nguyen
Snapshot Date: 2024-05-16 07:30:02 -0400 (Thu, 16 May 2024)
git_url: https://git.bioconductor.org/packages/MouseAgingData
git_branch: devel
git_last_commit: a13e364
git_last_commit_date: 2024-04-30 11:12:26 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published

CHECK results for MouseAgingData on nebbiolo2


To the developers/maintainers of the MouseAgingData package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: MouseAgingData
Version: 1.1.0
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:MouseAgingData.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings MouseAgingData_1.1.0.tar.gz
StartedAt: 2024-05-16 11:43:31 -0400 (Thu, 16 May 2024)
EndedAt: 2024-05-16 11:47:05 -0400 (Thu, 16 May 2024)
EllapsedTime: 214.5 seconds
RetCode: 0
Status:   OK  
CheckDir: MouseAgingData.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:MouseAgingData.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings MouseAgingData_1.1.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.20-data-experiment/meat/MouseAgingData.Rcheck’
* using R version 4.4.0 RC (2024-04-16 r86468)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* checking for file ‘MouseAgingData/DESCRIPTION’ ... OK
* this is package ‘MouseAgingData’ version ‘1.1.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MouseAgingData’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
parabiosis10x 12.843  1.583  14.897
AgingBrain10x 10.689  0.806  12.199
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

MouseAgingData.Rcheck/00install.out

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### Running command:
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###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL MouseAgingData
###
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* installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’
* installing *source* package ‘MouseAgingData’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MouseAgingData)

Tests output


Example timings

MouseAgingData.Rcheck/MouseAgingData-Ex.timings

nameusersystemelapsed
AgingBrain10x10.689 0.80612.199
parabiosis10x12.843 1.58314.897