Back to Build/check report for BioC 3.20 experimental data |
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This page was generated on 2024-05-02 14:51:54 -0400 (Thu, 02 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" | 4661 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 157/425 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
GSVAdata 1.41.0 (landing page) Robert Castelo
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ||||||||
To the developers/maintainers of the GSVAdata package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: GSVAdata |
Version: 1.41.0 |
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:GSVAdata.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings GSVAdata_1.41.0.tar.gz |
StartedAt: 2024-05-02 11:30:42 -0400 (Thu, 02 May 2024) |
EndedAt: 2024-05-02 11:31:40 -0400 (Thu, 02 May 2024) |
EllapsedTime: 58.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: GSVAdata.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:GSVAdata.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings GSVAdata_1.41.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.20-data-experiment/meat/GSVAdata.Rcheck’ * using R version 4.4.0 RC (2024-04-16 r86468) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 * running under: Ubuntu 22.04.4 LTS * using session charset: UTF-8 * checking for file ‘GSVAdata/DESCRIPTION’ ... OK * this is package ‘GSVAdata’ version ‘1.41.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘GSVAdata’ can be installed ... OK * checking installed package size ... NOTE installed size is 12.8Mb sub-directories of 1Mb or more: data 12.7Mb * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.20-data-experiment/meat/GSVAdata.Rcheck/00check.log’ for details.
GSVAdata.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL GSVAdata ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’ * installing *source* package ‘GSVAdata’ ... ** using staged installation ** data ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GSVAdata)
GSVAdata.Rcheck/GSVAdata-Ex.timings
name | user | system | elapsed | |
annotEntrez220212 | 0.049 | 0.000 | 0.049 | |
brainTxDbSets | 0.002 | 0.000 | 0.003 | |
c2BroadSets | 1.376 | 0.067 | 1.443 | |
commonPickrellHuang | 0.419 | 0.005 | 0.423 | |
gbm_VerhaakEtAl | 0.375 | 0.019 | 0.395 | |
genderGenesEntrez | 0.001 | 0.000 | 0.001 | |
leukemia | 0.307 | 0.003 | 0.312 | |