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This page was generated on 2024-07-11 14:51 -0400 (Thu, 11 Jul 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4675
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 16/425HostnameOS / ArchINSTALLBUILDCHECK
ARRmData 1.41.0  (landing page)
Jean-Philippe Fortin
Snapshot Date: 2024-07-11 07:30 -0400 (Thu, 11 Jul 2024)
git_url: https://git.bioconductor.org/packages/ARRmData
git_branch: devel
git_last_commit: 1831c7c
git_last_commit_date: 2024-04-30 10:38:37 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published


CHECK results for ARRmData on nebbiolo2

To the developers/maintainers of the ARRmData package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: ARRmData
Version: 1.41.0
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:ARRmData.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings ARRmData_1.41.0.tar.gz
StartedAt: 2024-07-11 10:59:24 -0400 (Thu, 11 Jul 2024)
EndedAt: 2024-07-11 10:59:52 -0400 (Thu, 11 Jul 2024)
EllapsedTime: 28.0 seconds
RetCode: 0
Status:   OK  
CheckDir: ARRmData.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:ARRmData.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings ARRmData_1.41.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.20-data-experiment/meat/ARRmData.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* checking for file ‘ARRmData/DESCRIPTION’ ... OK
* this is package ‘ARRmData’ version ‘1.41.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ARRmData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 56.6Mb
  sub-directories of 1Mb or more:
    data  56.5Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.20-data-experiment/meat/ARRmData.Rcheck/00check.log’
for details.


Installation output

ARRmData.Rcheck/00install.out

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### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL ARRmData
###
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* installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’
* installing *source* package ‘ARRmData’ ...
** using staged installation
** data
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ARRmData)

Tests output


Example timings

ARRmData.Rcheck/ARRmData-Ex.timings

nameusersystemelapsed
betaMatrix4.8240.1324.956
greenControlMatrix0.0050.0000.005
redControlMatrix0.0050.0000.005
sampleNames000