Back to Mac ARM64 build report for BioC 3.20 |
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This page was generated on 2024-05-20 11:32:12 -0400 (Mon, 20 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4381 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 864/2233 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
goProfiles 1.67.0 (landing page) Alex Sanchez
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | ||||||||
To the developers/maintainers of the goProfiles package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: goProfiles |
Version: 1.67.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:goProfiles.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings goProfiles_1.67.0.tar.gz |
StartedAt: 2024-05-19 15:06:37 -0400 (Sun, 19 May 2024) |
EndedAt: 2024-05-19 15:09:50 -0400 (Sun, 19 May 2024) |
EllapsedTime: 193.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: goProfiles.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:goProfiles.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings goProfiles_1.67.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.20-bioc-mac-arm64/meat/goProfiles.Rcheck’ * using R version 4.4.0 Patched (2024-04-24 r86482) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.6 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘goProfiles/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘goProfiles’ version ‘1.67.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘goProfiles’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) compareGeneLists.Rd:6: Escaped LaTeX specials: \~ checkRd: (-1) compareProfilesLists.Rd:7: Escaped LaTeX specials: \~ * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed compareGeneLists 19.769 0.312 20.248 equivalentGOProfiles 13.137 0.199 13.404 fisherGOProfiles 6.034 0.117 6.173 printProfiles 5.585 0.085 5.686 plotProfiles 5.172 0.077 5.270 mergeProfilesLists 5.136 0.085 5.239 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.20-bioc-mac-arm64/meat/goProfiles.Rcheck/00check.log’ for details.
goProfiles.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL goProfiles ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘goProfiles’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (goProfiles)
goProfiles.Rcheck/goProfiles-Ex.timings
name | user | system | elapsed | |
CD4ids | 0.002 | 0.002 | 0.005 | |
GOTermsList | 0.000 | 0.001 | 0.001 | |
basicProfile | 3.921 | 0.110 | 4.046 | |
compSummary | 0 | 0 | 0 | |
compareGOProfiles | 4.632 | 0.081 | 4.732 | |
compareGeneLists | 19.769 | 0.312 | 20.248 | |
compareProfilesLists | 0.000 | 0.000 | 0.001 | |
contractedProfile | 1.891 | 0.032 | 1.930 | |
conversionFunctions | 0.034 | 0.006 | 0.040 | |
drosophila | 0.003 | 0.002 | 0.004 | |
equivClust | 0.001 | 0.000 | 0.001 | |
equivClust2pdf | 0.019 | 0.005 | 0.024 | |
equivSummary | 0 | 0 | 0 | |
equivalentGOProfiles | 13.137 | 0.199 | 13.404 | |
expandedLevel | 1.779 | 0.034 | 1.817 | |
expandedProfile | 0.839 | 0.015 | 0.856 | |
fisherGOProfiles | 6.034 | 0.117 | 6.173 | |
fitGOProfile | 0 | 0 | 0 | |
hugoIds | 0.019 | 0.002 | 0.021 | |
iterEquivClust | 0 | 0 | 0 | |
mergeProfilesLists | 5.136 | 0.085 | 5.239 | |
ngenes | 1.910 | 0.031 | 1.945 | |
omimIds | 0.007 | 0.003 | 0.010 | |
plotProfiles | 5.172 | 0.077 | 5.270 | |
printProfiles | 5.585 | 0.085 | 5.686 | |
prostateIds | 0.007 | 0.003 | 0.009 | |