Back to Mac ARM64 build report for BioC 3.20 |
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This page was generated on 2024-05-20 11:32:11 -0400 (Mon, 20 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4381 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 760/2233 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
gDRimport 1.3.0 (landing page) Arkadiusz Gladki
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | ||||||||
To the developers/maintainers of the gDRimport package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: gDRimport |
Version: 1.3.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:gDRimport.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings gDRimport_1.3.0.tar.gz |
StartedAt: 2024-05-19 13:54:11 -0400 (Sun, 19 May 2024) |
EndedAt: 2024-05-19 13:57:38 -0400 (Sun, 19 May 2024) |
EllapsedTime: 207.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: gDRimport.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:gDRimport.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings gDRimport_1.3.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.20-bioc-mac-arm64/meat/gDRimport.Rcheck’ * using R version 4.4.0 Patched (2024-04-24 r86482) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.6 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘gDRimport/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘gDRimport’ version ‘1.3.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘gDRimport’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed convert_MAE_to_PSet 8.934 0.219 9.204 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
gDRimport.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL gDRimport ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘gDRimport’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gDRimport)
gDRimport.Rcheck/tests/testthat.Rout
R version 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: aarch64-apple-darwin20 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(gDRimport) > > test_check("gDRimport") 2024-05-19 13:57:02 Building assay index... 2024-05-19 13:57:02 Joining rowData to assayIndex... 2024-05-19 13:57:03 Joining colData to assayIndex... 2024-05-19 13:57:04 Joining assays to assayIndex... 2024-05-19 13:57:06 Setting assayIndex key... 2024-05-19 13:57:07 Building LongTable... 2024-05-19 13:57:08 Building assay index... 2024-05-19 13:57:08 Joining rowData to assayIndex... 2024-05-19 13:57:09 Joining colData to assayIndex... 2024-05-19 13:57:10 Joining assays to assayIndex... 2024-05-19 13:57:12 Setting assayIndex key... 2024-05-19 13:57:13 Building LongTable... INFO [2024-05-19 13:57:14] Manifest loaded successfully INFO [2024-05-19 13:57:14] Manifest loaded successfully INFO [2024-05-19 13:57:14] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data1/RawData_day0.xlsx, sheet Readout_0077vs0068_day7 INFO [2024-05-19 13:57:14] Plate 201904190a read; 384 wells INFO [2024-05-19 13:57:14] Plate 201904190b read; 384 wells INFO [2024-05-19 13:57:14] Plate 201904190c read; 384 wells INFO [2024-05-19 13:57:14] Plate 201904190d read; 384 wells INFO [2024-05-19 13:57:14] Plate 201904190e read; 384 wells INFO [2024-05-19 13:57:14] Plate 201904190f read; 384 wells INFO [2024-05-19 13:57:14] File done INFO [2024-05-19 13:57:14] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data1/RawData_day7.xlsx, sheet Readout_0077vs0068_day7 INFO [2024-05-19 13:57:15] Plate 201904197a read; 384 wells INFO [2024-05-19 13:57:15] Plate 201904197b read; 384 wells INFO [2024-05-19 13:57:15] Plate 201904197c read; 384 wells INFO [2024-05-19 13:57:15] Plate 201904197d read; 384 wells INFO [2024-05-19 13:57:15] Plate 201904197e read; 384 wells INFO [2024-05-19 13:57:15] Plate 201904197f read; 384 wells INFO [2024-05-19 13:57:15] File done INFO [2024-05-19 13:57:15] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data1/RawData_day0.xlsx, sheet Readout_0077vs0068_day7 INFO [2024-05-19 13:57:15] Plate 201904190a read; 384 wells INFO [2024-05-19 13:57:15] Plate 201904190b read; 384 wells INFO [2024-05-19 13:57:15] Plate 201904190c read; 384 wells INFO [2024-05-19 13:57:15] Plate 201904190d read; 384 wells INFO [2024-05-19 13:57:15] Plate 201904190e read; 384 wells INFO [2024-05-19 13:57:15] Plate 201904190f read; 384 wells INFO [2024-05-19 13:57:15] File done INFO [2024-05-19 13:57:15] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data1/RawData_day7.xlsx, sheet Readout_0077vs0068_day7 INFO [2024-05-19 13:57:15] Plate 201904197a read; 384 wells INFO [2024-05-19 13:57:15] Plate 201904197b read; 384 wells INFO [2024-05-19 13:57:15] Plate 201904197c read; 384 wells INFO [2024-05-19 13:57:15] Plate 201904197d read; 384 wells INFO [2024-05-19 13:57:15] Plate 201904197e read; 384 wells INFO [2024-05-19 13:57:15] Plate 201904197f read; 384 wells INFO [2024-05-19 13:57:15] File done INFO [2024-05-19 13:57:15] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data1/RawData_day0.xlsx, sheet Readout_0077vs0068_day7 INFO [2024-05-19 13:57:16] Plate 201904190a read; 384 wells INFO [2024-05-19 13:57:16] Plate 201904190b read; 384 wells INFO [2024-05-19 13:57:16] Plate 201904190c read; 384 wells INFO [2024-05-19 13:57:16] Plate 201904190d read; 384 wells INFO [2024-05-19 13:57:16] Plate 201904190e read; 384 wells INFO [2024-05-19 13:57:16] Plate 201904190f read; 384 wells INFO [2024-05-19 13:57:16] File done INFO [2024-05-19 13:57:16] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H2122-2 INFO [2024-05-19 13:57:16] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H358-2 INFO [2024-05-19 13:57:16] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H358-1 INFO [2024-05-19 13:57:16] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H2122-1 INFO [2024-05-19 13:57:17] Reading Template_7daytreated.xlsx with load_templates_xlsx INFO [2024-05-19 13:57:17] Loading Template_7daytreated.xlsx INFO [2024-05-19 13:57:17] Loading Template_Untreated.xlsx INFO [2024-05-19 13:57:17] Templates loaded successfully! INFO [2024-05-19 13:57:17] Reading Template_7daytreated.xlsx with load_templates_xlsx INFO [2024-05-19 13:57:17] Loading Template_7daytreated.xlsx INFO [2024-05-19 13:57:17] Loading Template_Untreated.xlsx INFO [2024-05-19 13:57:17] Templates loaded successfully! INFO [2024-05-19 13:57:17] Reading D300_trt_Tecan_96_well_plates.xlsx with load_templates_xlsx INFO [2024-05-19 13:57:17] Loading D300_trt_Tecan_96_well_plates.xlsx INFO [2024-05-19 13:57:17] Templates loaded successfully! INFO [2024-05-19 13:57:17] Reading Template_7daytreated.xlsx with load_templates_xlsx INFO [2024-05-19 13:57:17] Loading Template_7daytreated.xlsx INFO [2024-05-19 13:57:17] Templates loaded successfully! INFO [2024-05-19 13:57:17] Manifest loaded successfully INFO [2024-05-19 13:57:17] Reading Template_7daytreated.xlsx with load_templates_xlsx INFO [2024-05-19 13:57:17] Loading Template_7daytreated.xlsx INFO [2024-05-19 13:57:18] Loading Template_Untreated.xlsx INFO [2024-05-19 13:57:18] Templates loaded successfully! INFO [2024-05-19 13:57:18] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data1/RawData_day0.xlsx, sheet Readout_0077vs0068_day7 INFO [2024-05-19 13:57:18] Plate 201904190a read; 384 wells INFO [2024-05-19 13:57:18] Plate 201904190b read; 384 wells INFO [2024-05-19 13:57:18] Plate 201904190c read; 384 wells INFO [2024-05-19 13:57:18] Plate 201904190d read; 384 wells INFO [2024-05-19 13:57:18] Plate 201904190e read; 384 wells INFO [2024-05-19 13:57:18] Plate 201904190f read; 384 wells INFO [2024-05-19 13:57:18] File done INFO [2024-05-19 13:57:18] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data1/RawData_day7.xlsx, sheet Readout_0077vs0068_day7 INFO [2024-05-19 13:57:18] Plate 201904197a read; 384 wells INFO [2024-05-19 13:57:18] Plate 201904197b read; 384 wells INFO [2024-05-19 13:57:18] Plate 201904197c read; 384 wells INFO [2024-05-19 13:57:18] Plate 201904197d read; 384 wells INFO [2024-05-19 13:57:18] Plate 201904197e read; 384 wells INFO [2024-05-19 13:57:18] Plate 201904197f read; 384 wells INFO [2024-05-19 13:57:18] File done INFO [2024-05-19 13:57:19] Manifest loaded successfully INFO [2024-05-19 13:57:19] Reading D300_trt_Tecan_96_well_plates.xlsx with load_templates_xlsx INFO [2024-05-19 13:57:19] Loading D300_trt_Tecan_96_well_plates.xlsx INFO [2024-05-19 13:57:19] Templates loaded successfully! INFO [2024-05-19 13:57:19] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H2122-2 INFO [2024-05-19 13:57:19] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H358-2 INFO [2024-05-19 13:57:19] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H358-1 INFO [2024-05-19 13:57:19] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H2122-1 INFO [2024-05-19 13:57:19] Manifest loaded successfully INFO [2024-05-19 13:57:19] Reading Project40.treated.template.xlsx with load_templates_xlsx INFO [2024-05-19 13:57:19] Loading Project40.treated.template.xlsx INFO [2024-05-19 13:57:20] Loading Project40.untreated.template.xlsx INFO [2024-05-19 13:57:20] Templates loaded successfully! INFO [2024-05-19 13:57:20] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/H0109269D00.csv, sheet 0 INFO [2024-05-19 13:57:20] Plate H0109269D00 read; 384 wells INFO [2024-05-19 13:57:20] File done INFO [2024-05-19 13:57:20] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/H0109269D01.csv, sheet 0 INFO [2024-05-19 13:57:20] Plate H0109269D01 read; 384 wells INFO [2024-05-19 13:57:20] File done INFO [2024-05-19 13:57:20] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/H0309269D00.csv, sheet 0 INFO [2024-05-19 13:57:20] Plate H0309269D00 read; 384 wells INFO [2024-05-19 13:57:20] File done INFO [2024-05-19 13:57:20] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/H0309269D01.csv, sheet 0 INFO [2024-05-19 13:57:20] Plate H0309269D01 read; 384 wells INFO [2024-05-19 13:57:20] File done INFO [2024-05-19 13:57:20] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/H0409269D00.csv, sheet 0 INFO [2024-05-19 13:57:20] Plate H0409269D00 read; 384 wells INFO [2024-05-19 13:57:20] File done INFO [2024-05-19 13:57:20] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/H0409269D01.csv, sheet 0 INFO [2024-05-19 13:57:20] Plate H0409269D01 read; 384 wells INFO [2024-05-19 13:57:20] File done INFO [2024-05-19 13:57:20] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/H0509269D00.csv, sheet 0 INFO [2024-05-19 13:57:20] Plate H0509269D00 read; 384 wells INFO [2024-05-19 13:57:20] File done INFO [2024-05-19 13:57:20] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/H0509269D01.csv, sheet 0 INFO [2024-05-19 13:57:20] Plate H0509269D01 read; 384 wells INFO [2024-05-19 13:57:20] File done INFO [2024-05-19 13:57:20] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/H0609269D00.csv, sheet 0 INFO [2024-05-19 13:57:20] Plate H0609269D00 read; 384 wells INFO [2024-05-19 13:57:20] File done INFO [2024-05-19 13:57:20] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/H0609269D01.csv, sheet 0 INFO [2024-05-19 13:57:20] Plate H0609269D01 read; 384 wells INFO [2024-05-19 13:57:20] File done INFO [2024-05-19 13:57:20] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/H0709269D00.csv, sheet 0 INFO [2024-05-19 13:57:20] Plate H0709269D00 read; 384 wells INFO [2024-05-19 13:57:20] File done INFO [2024-05-19 13:57:20] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/H0709269D01.csv, sheet 0 INFO [2024-05-19 13:57:20] Plate H0709269D01 read; 384 wells INFO [2024-05-19 13:57:20] File done INFO [2024-05-19 13:57:20] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/H0809269D00.csv, sheet 0 INFO [2024-05-19 13:57:20] Plate H0809269D00 read; 384 wells INFO [2024-05-19 13:57:20] File done INFO [2024-05-19 13:57:20] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/H0809269D01.csv, sheet 0 INFO [2024-05-19 13:57:20] Plate H0809269D01 read; 384 wells INFO [2024-05-19 13:57:20] File done INFO [2024-05-19 13:57:20] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/H0909269D00.csv, sheet 0 INFO [2024-05-19 13:57:20] Plate H0909269D00 read; 384 wells INFO [2024-05-19 13:57:20] File done INFO [2024-05-19 13:57:20] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/H0909269D01.csv, sheet 0 INFO [2024-05-19 13:57:20] Plate H0909269D01 read; 384 wells INFO [2024-05-19 13:57:20] File done INFO [2024-05-19 13:57:20] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/H1109269D00.csv, sheet 0 INFO [2024-05-19 13:57:20] Plate H1109269D00 read; 384 wells INFO [2024-05-19 13:57:20] File done INFO [2024-05-19 13:57:20] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/H1109269D01.csv, sheet 0 INFO [2024-05-19 13:57:20] Plate H1109269D01 read; 384 wells INFO [2024-05-19 13:57:20] File done INFO [2024-05-19 13:57:20] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/H1209269D00.csv, sheet 0 INFO [2024-05-19 13:57:20] Plate H1209269D00 read; 384 wells INFO [2024-05-19 13:57:20] File done INFO [2024-05-19 13:57:20] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/H1209269D01.csv, sheet 0 INFO [2024-05-19 13:57:20] Plate H1209269D01 read; 384 wells INFO [2024-05-19 13:57:20] File done INFO [2024-05-19 13:57:20] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/H1409269D00.csv, sheet 0 INFO [2024-05-19 13:57:20] Plate H1409269D00 read; 384 wells INFO [2024-05-19 13:57:20] File done INFO [2024-05-19 13:57:20] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/H1409269D01.csv, sheet 0 INFO [2024-05-19 13:57:20] Plate H1409269D01 read; 384 wells INFO [2024-05-19 13:57:20] File done INFO [2024-05-19 13:57:20] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/K0209269D00.csv, sheet 0 INFO [2024-05-19 13:57:20] Plate K0209269D00 read; 384 wells INFO [2024-05-19 13:57:20] File done INFO [2024-05-19 13:57:20] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/K0209269D01.csv, sheet 0 INFO [2024-05-19 13:57:20] Plate K0209269D01 read; 384 wells INFO [2024-05-19 13:57:20] File done INFO [2024-05-19 13:57:20] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/K0809269D00.csv, sheet 0 INFO [2024-05-19 13:57:20] Plate K0809269D00 read; 384 wells INFO [2024-05-19 13:57:20] File done INFO [2024-05-19 13:57:20] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/K0809269D01.csv, sheet 0 INFO [2024-05-19 13:57:20] Plate K0809269D01 read; 384 wells INFO [2024-05-19 13:57:20] File done INFO [2024-05-19 13:57:20] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/K1009269D00.csv, sheet 0 INFO [2024-05-19 13:57:20] Plate K1009269D00 read; 384 wells INFO [2024-05-19 13:57:20] File done INFO [2024-05-19 13:57:20] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/K1009269D01.csv, sheet 0 INFO [2024-05-19 13:57:20] Plate K1009269D01 read; 384 wells INFO [2024-05-19 13:57:20] File done INFO [2024-05-19 13:57:20] Manifest loaded successfully INFO [2024-05-19 13:57:20] Reading Template_7daytreated.xlsx with load_templates_xlsx INFO [2024-05-19 13:57:20] Loading Template_7daytreated.xlsx INFO [2024-05-19 13:57:21] Loading Template_Untreated.xlsx INFO [2024-05-19 13:57:21] Templates loaded successfully! INFO [2024-05-19 13:57:21] Manifest loaded successfully INFO [2024-05-19 13:57:21] Reading Template_7daytreated.xlsx with load_templates_xlsx INFO [2024-05-19 13:57:21] Loading Template_7daytreated.xlsx INFO [2024-05-19 13:57:21] Loading Template_Untreated.xlsx INFO [2024-05-19 13:57:21] Templates loaded successfully! INFO [2024-05-19 13:57:21] Manifest loaded successfully INFO [2024-05-19 13:57:21] Reading Template_trt.tsv with load_templates_tsv INFO [2024-05-19 13:57:21] Loading Template_trt.tsv INFO [2024-05-19 13:57:21] Loading Template_untrt.tsv INFO [2024-05-19 13:57:21] Templates loaded successfully! INFO [2024-05-19 13:57:21] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data5/RawData.tsv WARN [2024-05-19 13:57:23] Metadata field names for cannot contain spaces --> corrected to: Gnumber WARN [2024-05-19 13:57:23] Header Gnumber in corrected to Gnumber [ FAIL 0 | WARN 0 | SKIP 0 | PASS 132 ] > > > proc.time() user system elapsed 50.573 2.819 53.809
gDRimport.Rcheck/gDRimport-Ex.timings
name | user | system | elapsed | |
check_metadata_names | 0.087 | 0.010 | 0.100 | |
convert_MAE_to_PSet | 8.934 | 0.219 | 9.204 | |
convert_pset_to_df | 0.181 | 0.022 | 0.205 | |
detect_file_format | 0.290 | 0.023 | 0.316 | |
getPSet | 0.137 | 0.006 | 0.143 | |
get_exception_data | 0.010 | 0.002 | 0.012 | |
get_test_D300_data | 0.002 | 0.001 | 0.003 | |
get_test_EnVision_data | 0.002 | 0.001 | 0.004 | |
get_test_Tecan_data | 0.002 | 0.000 | 0.002 | |
get_test_data | 0.003 | 0.000 | 0.004 | |
get_test_tsv_data | 0.001 | 0.000 | 0.002 | |
import_D300 | 2.511 | 0.398 | 2.924 | |
is_readable_v | 0.002 | 0.000 | 0.002 | |
load_data | 1.334 | 0.070 | 1.408 | |
load_manifest | 0.050 | 0.004 | 0.053 | |
load_results | 0.891 | 0.029 | 0.922 | |
load_templates | 0.215 | 0.033 | 0.251 | |
manifest_path-method | 0.002 | 0.000 | 0.003 | |
parse_D300_xml | 0.947 | 0.006 | 0.957 | |
read_excel_to_dt | 0.025 | 0.013 | 0.040 | |
result_path-method | 0.003 | 0.000 | 0.003 | |
setEnvForPSet | 0.001 | 0.000 | 0.000 | |
standardize_record_values | 0 | 0 | 0 | |
template_path-method | 0.002 | 0.000 | 0.002 | |