Back to Mac ARM64 build report for BioC 3.20 |
|
This page was generated on 2024-05-13 11:32:04 -0400 (Mon, 13 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4378 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 711/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
flowCore 2.17.0 (landing page) Mike Jiang
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | WARNINGS | OK | ||||||||
To the developers/maintainers of the flowCore package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: flowCore |
Version: 2.17.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:flowCore.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings flowCore_2.17.0.tar.gz |
StartedAt: 2024-05-12 13:42:41 -0400 (Sun, 12 May 2024) |
EndedAt: 2024-05-12 13:46:04 -0400 (Sun, 12 May 2024) |
EllapsedTime: 202.1 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: flowCore.Rcheck |
Warnings: 3 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:flowCore.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings flowCore_2.17.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.20-bioc-mac-arm64/meat/flowCore.Rcheck’ * using R version 4.4.0 Patched (2024-04-24 r86482) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.6 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘flowCore/DESCRIPTION’ ... OK * this is package ‘flowCore’ version ‘2.17.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘flowCore’ can be installed ... OK * used C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’ * used SDK: ‘MacOSX11.3.sdk’ * checking C++ specification ... OK Not all R platforms support C++17 * checking installed package size ... NOTE installed size is 9.0Mb sub-directories of 1Mb or more: R 1.2Mb data 5.4Mb extdata 1.1Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘Rcpp’ All declared Imports should be used. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE eval,compensatedParameter-missing : <anonymous>: no visible binding for global variable ‘mat’ eval,compensatedParameter-missing : <anonymous>: no visible binding for global variable ‘msv’ show,flowFrame: no visible global function definition for ‘capture.output’ Undefined global functions or variables: capture.output mat msv Consider adding importFrom("utils", "capture.output") to your NAMESPACE file. * checking Rd files ... NOTE checkRd: (-1) identifier-methods.Rd:36: Escaped LaTeX specials: \^ checkRd: (-1) quadraticTransform.Rd:26: Escaped LaTeX specials: \^ checkRd: (-1) read.FCS.Rd:26: Escaped LaTeX specials: \$ * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... WARNING Undocumented code objects: ‘multiRangeGate’ Undocumented S4 classes: ‘multiRangeGate’ Undocumented S4 methods: generic '%in%' and siglist 'flowFrame,multiRangeGate' generic 'show' and siglist 'multiRangeGate' All user-level objects in a package (including S4 classes and methods) should have documentation entries. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... WARNING Non-portable flags in variable 'PKG_CPPFLAGS': -w -Wfatal-errors * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking compiled code ... WARNING Note: information on .o files is not available File ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/flowCore/libs/flowCore.so’: Found ‘__ZNSt3__14cerrE’, possibly from ‘std::cerr’ (C++) Found ‘_rand’, possibly from ‘rand’ (C) Found ‘_sprintf’, possibly from ‘sprintf’ (C) Found ‘_srand’, possibly from ‘srand’ (C) Compiled code should not call entry points which might terminate R nor write to stdout/stderr instead of to the console, nor use Fortran I/O nor system RNGs nor [v]sprintf. The detected symbols are linked into the code but might come from libraries and not actually be called. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual. * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed filterResultList-class 6.387 0.239 6.654 flowFrame-class 5.385 0.197 5.669 biexponentialTransform 4.820 0.064 5.083 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 WARNINGs, 4 NOTEs See ‘/Users/biocbuild/bbs-3.20-bioc-mac-arm64/meat/flowCore.Rcheck/00check.log’ for details.
flowCore.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL flowCore ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘flowCore’ ... ** using staged installation ** libs using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’ using C++17 using SDK: ‘MacOSX11.3.sdk’ clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/cpp11/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/cytolib/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RProtoBufLib/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c FastLogicle.cpp -o FastLogicle.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/cpp11/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/cytolib/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RProtoBufLib/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Hyperlog.cpp -o Hyperlog.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/cpp11/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/cytolib/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RProtoBufLib/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Logicle.cpp -o Logicle.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/cpp11/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/cytolib/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RProtoBufLib/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c biexponential.cpp -o biexponential.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/cpp11/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/cytolib/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RProtoBufLib/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c convertRawBytes.cpp -o convertRawBytes.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/cpp11/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/cytolib/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RProtoBufLib/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c cpp11.cpp -o cpp11.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/cpp11/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/cytolib/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RProtoBufLib/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c fcsTextParse.cpp -o fcsTextParse.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/cpp11/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/cytolib/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RProtoBufLib/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c hyperlogTransform.cpp -o hyperlogTransform.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/cpp11/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/cytolib/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RProtoBufLib/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c inPolygon.cpp -o inPolygon.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/cpp11/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/cytolib/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RProtoBufLib/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c inPolytope.cpp -o inPolytope.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/cpp11/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/cytolib/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RProtoBufLib/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c logicleTransform.cpp -o logicleTransform.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/cpp11/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/cytolib/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RProtoBufLib/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c poly_centroid.cpp -o poly_centroid.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/cpp11/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/cytolib/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RProtoBufLib/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sortBytes.cpp -o sortBytes.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/cpp11/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/cytolib/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RProtoBufLib/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c uint2double.cpp -o uint2double.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/cpp11/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/cytolib/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RProtoBufLib/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c zeroin.cpp -o zeroin.o clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o flowCore.so FastLogicle.o Hyperlog.o Logicle.o biexponential.o convertRawBytes.o cpp11.o fcsTextParse.o hyperlogTransform.o inPolygon.o inPolytope.o logicleTransform.o poly_centroid.o sortBytes.o uint2double.o zeroin.o /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/cytolib/lib/libcytolib.a -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation if [ `uname -s` = 'Darwin' ]; then install_name_tool -change /usr/local/clang4/lib/libc++.1.dylib /usr/lib/libc++.1.dylib flowCore.so; fi installing to /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/00LOCK-flowCore/00new/flowCore/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (flowCore)
flowCore.Rcheck/tests/testthat.Rout
R version 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: aarch64-apple-darwin20 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(flowCore) > library(flowStats) Warning message: replacing previous import 'flowViz::contour' by 'graphics::contour' when loading 'flowStats' > > > test_check("flowCore") Loading required package: BiocGenerics Attaching package: 'BiocGenerics' The following object is masked from 'package:flowStats': normalize The following object is masked from 'package:flowCore': normalize The following objects are masked from 'package:stats': IQR, mad, sd, var, xtabs The following objects are masked from 'package:base': Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, table, tapply, union, unique, unsplit, which.max, which.min Welcome to Bioconductor Vignettes contain introductory material; view with 'browseVignettes()'. To cite Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'. [ FAIL 0 | WARN 2 | SKIP 3 | PASS 324 ] ══ Skipped tests (3) ═══════════════════════════════════════════════════════════ • dir.exists(dataPath) is not TRUE (1): 'test-IO-internal.R:4:1' • file.exists(filename) is not TRUE (2): 'test-IO.R:32:3', 'test-IO.R:40:3' [ FAIL 0 | WARN 2 | SKIP 3 | PASS 324 ] > > #devtools::test("~/rglab/workspace/flowCore") > > proc.time() user system elapsed 30.972 1.206 33.830
flowCore.Rcheck/flowCore-Ex.timings
name | user | system | elapsed | |
EHtrans-class | 0.073 | 0.004 | 0.080 | |
FCSTransTransform | 1.819 | 0.035 | 2.159 | |
Subset-methods | 0.207 | 0.016 | 0.252 | |
arcsinhTransform | 0.050 | 0.004 | 0.061 | |
asinht-class | 0.026 | 0.002 | 0.032 | |
asinhtGml2-class | 0.028 | 0.003 | 0.036 | |
biexponentialTransform | 4.820 | 0.064 | 5.083 | |
boundaryFilter-class | 0.071 | 0.002 | 0.074 | |
characterOrNumeric-class | 0.001 | 0.000 | 0.002 | |
characterOrParameters-class | 0.001 | 0.000 | 0.001 | |
characterOrTransformation-class | 0.001 | 0.000 | 0.001 | |
coerce | 0.045 | 0.004 | 0.050 | |
collapse_desc | 2.312 | 0.037 | 2.355 | |
compensatedParameter-class | 0.115 | 0.009 | 0.126 | |
compensation-class | 0.286 | 0.027 | 0.314 | |
decompensate | 0.049 | 0.007 | 0.058 | |
dg1polynomial-class | 0.038 | 0.011 | 0.049 | |
each_col | 0.029 | 0.003 | 0.032 | |
ellipsoidGate-class | 0.060 | 0.004 | 0.064 | |
exponential-class | 0.023 | 0.002 | 0.026 | |
expressionFilter-class | 0.078 | 0.005 | 0.084 | |
filter-methods | 2.237 | 0.041 | 2.309 | |
filter-on-methods | 0.075 | 0.003 | 0.079 | |
filterList-class | 0.004 | 0.000 | 0.004 | |
filterResult-class | 0.001 | 0.001 | 0.001 | |
filterResultList-class | 6.387 | 0.239 | 6.654 | |
filterSummary-class | 0.609 | 0.018 | 0.629 | |
filterSummaryList-class | 2.167 | 0.055 | 2.232 | |
flowFrame-class | 5.385 | 0.197 | 5.669 | |
flowSet-class | 4.013 | 0.109 | 4.229 | |
fr_append_cols | 2.206 | 0.024 | 2.373 | |
fsApply | 0.126 | 0.009 | 0.149 | |
getIndexSort | 0.021 | 0.001 | 0.023 | |
hyperlog-class | 0.828 | 0.014 | 0.914 | |
hyperlogtGml2-class | 0.029 | 0.001 | 0.031 | |
identifier-methods | 0.022 | 0.001 | 0.023 | |
inverseLogicleTransform | 2.171 | 0.025 | 2.235 | |
invsplitscale-class | 0.024 | 0.001 | 0.025 | |
keyword-methods | 2.279 | 0.031 | 2.318 | |
kmeansFilter-class | 0.122 | 0.004 | 0.127 | |
linearTransform | 0.028 | 0.002 | 0.029 | |
lintGml2-class | 0.024 | 0.001 | 0.026 | |
lnTransform | 2.664 | 0.038 | 2.859 | |
logTransform | 0.042 | 0.002 | 0.060 | |
logarithm-class | 0.023 | 0.001 | 0.030 | |
logicalFilterResult-class | 0.000 | 0.000 | 0.001 | |
logicleTransform | 2.474 | 0.046 | 2.840 | |
logicletGml2-class | 0.041 | 0.002 | 0.044 | |
logtGml2-class | 0.025 | 0.002 | 0.029 | |
manyFilterResult-class | 0.001 | 0.000 | 0.001 | |
markernames | 2.539 | 0.036 | 2.625 | |
multipleFilterResult-class | 0.001 | 0.000 | 0.001 | |
parameters-methods | 0.025 | 0.002 | 0.027 | |
polygonGate-class | 0.064 | 0.003 | 0.068 | |
quadGate-class | 0.655 | 0.019 | 0.680 | |
quadratic-class | 0.025 | 0.002 | 0.027 | |
quadraticTransform | 0.029 | 0.001 | 0.031 | |
ratio-class | 0.029 | 0.001 | 0.032 | |
ratiotGml2-class | 0.024 | 0.001 | 0.026 | |
read.FCS | 0.075 | 0.004 | 0.081 | |
read.FCSheader | 0.007 | 0.003 | 0.011 | |
read.flowSet | 0.096 | 0.004 | 0.101 | |
rectangleGate-class | 0.085 | 0.004 | 0.090 | |
rotate_gate | 0.000 | 0.000 | 0.001 | |
sampleFilter-class | 0.053 | 0.003 | 0.056 | |
scaleTransform | 0.030 | 0.001 | 0.032 | |
scale_gate | 0 | 0 | 0 | |
shift_gate | 0.000 | 0.000 | 0.001 | |
singleParameterTransform-class | 0.001 | 0.000 | 0.002 | |
sinht-class | 0.027 | 0.002 | 0.028 | |
split-methods | 2.913 | 0.062 | 3.055 | |
splitScaleTransform | 2.721 | 0.044 | 2.805 | |
splitscale-class | 0.025 | 0.001 | 0.026 | |
squareroot-class | 0.025 | 0.001 | 0.027 | |
timeFilter-class | 3.458 | 0.061 | 4.298 | |
transform-class | 0.001 | 0.000 | 0.001 | |
transform | 2.570 | 0.037 | 2.695 | |
transformFilter-class | 0.144 | 0.002 | 0.161 | |
transformList-class | 2.920 | 0.046 | 3.322 | |
transformMap-class | 0.000 | 0.000 | 0.001 | |
transform_gate | 0.001 | 0.001 | 0.000 | |
truncateTransform | 0.031 | 0.002 | 0.038 | |
unitytransform-class | 0.022 | 0.002 | 0.025 | |
write.FCS | 0.046 | 0.004 | 0.052 | |
write.flowSet | 2.604 | 0.047 | 2.819 | |