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This page was generated on 2024-05-20 11:32:11 -0400 (Mon, 20 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson1macOS 13.6.6 Venturaarm644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4381
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Package 633/2233HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
enrichViewNet 1.3.0  (landing page)
Astrid Deschênes
Snapshot Date: 2024-05-18 09:00:01 -0400 (Sat, 18 May 2024)
git_url: https://git.bioconductor.org/packages/enrichViewNet
git_branch: devel
git_last_commit: 9e646f5
git_last_commit_date: 2024-04-30 11:52:32 -0400 (Tue, 30 Apr 2024)
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published

CHECK results for enrichViewNet on kjohnson1


To the developers/maintainers of the enrichViewNet package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: enrichViewNet
Version: 1.3.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:enrichViewNet.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings enrichViewNet_1.3.0.tar.gz
StartedAt: 2024-05-19 12:22:33 -0400 (Sun, 19 May 2024)
EndedAt: 2024-05-19 12:26:21 -0400 (Sun, 19 May 2024)
EllapsedTime: 228.0 seconds
RetCode: 0
Status:   OK  
CheckDir: enrichViewNet.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:enrichViewNet.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings enrichViewNet_1.3.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.20-bioc-mac-arm64/meat/enrichViewNet.Rcheck’
* using R version 4.4.0 Patched (2024-04-24 r86482)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.6.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘enrichViewNet/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘enrichViewNet’ version ‘1.3.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘enrichViewNet’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

enrichViewNet.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL enrichViewNet
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’
* installing *source* package ‘enrichViewNet’ ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (enrichViewNet)

Tests output

enrichViewNet.Rcheck/tests/testthat.Rout


R version 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(enrichViewNet)

> 
> ## Run all unit tests
> test_check("enrichViewNet")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 107 ]
> 
> proc.time()
   user  system elapsed 
 11.833   0.751  13.648 

Example timings

enrichViewNet.Rcheck/enrichViewNet-Ex.timings

nameusersystemelapsed
createBasicEmap1.0180.0561.123
createCXJSONForCytoscape0.0470.0050.061
createEnrichMap0.6800.0120.772
createEnrichMapMultiBasic0.6900.0170.748
createEnrichMapMultiComplex2.0740.0432.125
createMetaDataSectionCXJSON0.0020.0000.002
createMultiEmap1.3980.0251.429
createNetwork0.0640.0080.076
createNetworkForCytoscape0.0290.0020.032
demoGOST0.0640.0080.476
extractInformationWhenIntersection0.0290.0020.030
extractInformationWhenNoIntersection0.1190.0180.778
extractNodesAndEdgesInformation0.0110.0010.012
filterResults0.0020.0010.002
formatInformationForCXJSON0.0130.0010.014
isCytoscapeRunning0.0010.0000.002
manageNameDuplicationInEmap0.0010.0000.001
manageQueryDuplicationInEmap000
parentalNapaVsDMSODEG0.1950.0112.441
parentalNapaVsDMSOEnrichment0.6380.0100.649
removeRootTerm0.0220.0020.024
rosaNapaVsDMSODEG0.1630.0062.873
rosaNapaVsDMSOEnrichment0.4210.0080.432
validateCreateEnrichMapArguments0.0020.0020.004
validateCreateEnrichMapMultiArguments0.0130.0030.015
validateCreateEnrichMapMultiComplexArg0.0090.0020.010
validateCreateEnrichMapSubSectionArguments000
validateCreateNetworkArguments0.0010.0000.002