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This page was generated on 2024-05-13 11:32:02 -0400 (Mon, 13 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4378 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 470/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
cyanoFilter 1.13.0 (landing page) Oluwafemi Olusoji
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | ||||||||
To the developers/maintainers of the cyanoFilter package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: cyanoFilter |
Version: 1.13.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings cyanoFilter_1.13.0.tar.gz |
StartedAt: 2024-05-12 10:28:07 -0400 (Sun, 12 May 2024) |
EndedAt: 2024-05-12 10:29:55 -0400 (Sun, 12 May 2024) |
EllapsedTime: 108.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: cyanoFilter.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings cyanoFilter_1.13.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.20-bioc-mac-arm64/meat/cyanoFilter.Rcheck’ * using R version 4.4.0 Patched (2024-04-24 r86482) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.6 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘cyanoFilter/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘cyanoFilter’ version ‘1.13.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘cyanoFilter’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed gateFunc 11.641 0.524 9.672 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
cyanoFilter.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL cyanoFilter ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘cyanoFilter’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cyanoFilter)
cyanoFilter.Rcheck/cyanoFilter-Ex.timings
name | user | system | elapsed | |
MarginEvents | 0.540 | 0.036 | 0.590 | |
PhytoFilter | 0.416 | 0.038 | 0.463 | |
PhytopFilter | 0.615 | 0.048 | 0.671 | |
accTest | 0.424 | 0.038 | 0.465 | |
accuracy | 0.366 | 0.033 | 0.399 | |
cellmargin | 0.337 | 0.023 | 0.362 | |
clusterExtract | 0.838 | 0.040 | 0.881 | |
clusterExtractp | 1.063 | 0.038 | 1.105 | |
debrisNc | 0.356 | 0.038 | 0.396 | |
fullFlowframe-MarginEvents-method | 0.300 | 0.018 | 0.319 | |
fullFlowframe-PhytopFilter-method | 0.833 | 0.055 | 0.891 | |
fullFlowframe | 0.319 | 0.021 | 0.343 | |
gateFunc | 11.641 | 0.524 | 9.672 | |
ggpairsDens | 3.387 | 0.120 | 3.533 | |
ggplotDens | 1.079 | 0.049 | 1.133 | |
ggplotDens2 | 0.874 | 0.040 | 0.920 | |
goodfcs | 0.060 | 0.009 | 0.072 | |
is.DebrisFilter | 0 | 0 | 0 | |
is.MarginEvents | 0.000 | 0.000 | 0.001 | |
is.PhytopFilter | 0 | 0 | 0 | |
is.flowFrame | 0 | 0 | 0 | |
is.flowSet | 0.000 | 0.001 | 0.000 | |
lnTrans | 0.218 | 0.013 | 0.236 | |
newFlowframe | 0.232 | 0.051 | 0.288 | |
nona | 0.109 | 0.010 | 0.123 | |
noneg | 0.113 | 0.008 | 0.123 | |
oneDgate | 0.158 | 0.029 | 0.211 | |
pairsPlot | 2.412 | 0.133 | 2.612 | |
pigmentGate | 0.306 | 0.046 | 0.357 | |
reducedFlowframe-MarginEvents-method | 0.332 | 0.018 | 0.356 | |
reducedFlowframe | 0.345 | 0.026 | 0.374 | |
retain | 0.019 | 0.001 | 0.021 | |
rowNumbers | 0.232 | 0.049 | 0.285 | |
summaries-DebrisFilter-method | 0.313 | 0.022 | 0.338 | |
summaries-MarginEvents-method | 0.324 | 0.029 | 0.354 | |
summaries-PhytopFilter-method | 0.661 | 0.030 | 0.693 | |
summaries | 0.351 | 0.020 | 0.375 | |