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This page was generated on 2024-05-20 11:32:08 -0400 (Mon, 20 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson1macOS 13.6.6 Venturaarm644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4381
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Package 199/2233HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biodbHmdb 1.11.0  (landing page)
Pierrick Roger
Snapshot Date: 2024-05-18 09:00:01 -0400 (Sat, 18 May 2024)
git_url: https://git.bioconductor.org/packages/biodbHmdb
git_branch: devel
git_last_commit: c3d59a4
git_last_commit_date: 2024-04-30 11:39:05 -0400 (Tue, 30 Apr 2024)
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

CHECK results for biodbHmdb on kjohnson1


To the developers/maintainers of the biodbHmdb package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: biodbHmdb
Version: 1.11.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.11.0.tar.gz
StartedAt: 2024-05-19 06:40:21 -0400 (Sun, 19 May 2024)
EndedAt: 2024-05-19 06:41:20 -0400 (Sun, 19 May 2024)
EllapsedTime: 59.0 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: biodbHmdb.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.11.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.20-bioc-mac-arm64/meat/biodbHmdb.Rcheck’
* using R version 4.4.0 Patched (2024-04-24 r86482)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.6.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biodbHmdb/DESCRIPTION’ ... OK
* this is package ‘biodbHmdb’ version ‘1.11.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbHmdb’ can be installed ... OK
* used C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’
* used SDK: ‘MacOSX11.3.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘zip’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘HmdbMetabolitesConn’ ‘HmdbMetabolitesEntry’ ‘hmdbToSqlite’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.20-bioc-mac-arm64/meat/biodbHmdb.Rcheck/00check.log’
for details.

Installation output

biodbHmdb.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’
* installing *source* package ‘biodbHmdb’ ...
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c EntryMaker.cpp -o EntryMaker.o
EntryMaker.cpp:6:5: warning: field 'accession_tag' will be initialized after field 'closed' [-Wreorder-ctor]
    accession_tag("<accession>", "</accession>"),
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    closed(true)
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c FileEntryMaker.cpp -o FileEntryMaker.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c TagDetector.cpp -o TagDetector.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c XmlSplitter.cpp -o XmlSplitter.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c extractXmlEntries.cpp -o extractXmlEntries.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-100-TagDetector.cpp -o test-100-TagDetector.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-runner.cpp -o test-runner.o
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o biodbHmdb.so EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/00LOCK-biodbHmdb/00new/biodbHmdb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package  ‘biodbHmdb’ 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)

Tests output

biodbHmdb.Rcheck/tests/testthat.Rout


R version 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2024-05-19 06:40:55.826][biodb::testContext]
biodb.INFO [2024-05-19 06:40:55.831][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-19 06:40:55.832][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2024-05-19 06:40:55.833][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-19 06:40:55.834][biodb::testContext]
biodb.INFO [2024-05-19 06:40:55.836][biodb::testThat]
biodb.INFO [2024-05-19 06:40:55.836][biodb::testThat] Running test function  test_extractXmlEntries  (" extractXmlEntries() works fine. ").
biodb.INFO [2024-05-19 06:40:55.837][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-19 06:40:55.838][biodb::testThat]
biodb.INFO [2024-05-19 06:40:55.929][biodb::testContext]
biodb.INFO [2024-05-19 06:40:55.930][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-19 06:40:55.931][biodb::testContext] Test context - Generic tests
biodb.INFO [2024-05-19 06:40:55.931][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-19 06:40:55.931][biodb::testContext]
biodb.INFO [2024-05-19 06:40:55.937][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-05-19 06:40:55.938][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-05-19 06:40:55.943][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-19 06:40:55.943][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-05-19 06:40:55.944][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-05-19 06:40:55.944][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:55.944][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:55.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:55.945][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-05-19 06:40:55.969][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-05-19 06:40:55.970][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:55.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:55.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:55.971][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-05-19 06:40:55.972][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-05-19 06:40:55.972][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:55.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:55.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:55.973][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-05-19 06:40:55.973][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-05-19 06:40:55.974][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-05-19 06:40:55.974][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:55.974][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:55.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:55.975][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-05-19 06:40:55.975][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-05-19 06:40:55.976][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-05-19 06:40:55.976][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:55.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:55.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:55.977][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-05-19 06:40:55.977][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-05-19 06:40:55.978][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:55.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:55.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:55.979][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-05-19 06:40:55.979][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-05-19 06:40:55.979][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-05-19 06:40:55.980][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:55.980][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:55.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:55.981][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-05-19 06:40:55.981][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-05-19 06:40:55.981][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:55.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:55.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:55.982][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-05-19 06:40:55.983][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-05-19 06:40:55.984][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-05-19 06:40:55.985][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:55.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:55.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:55.988][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-05-19 06:40:55.989][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-05-19 06:40:55.989][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-05-19 06:40:55.990][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-05-19 06:40:55.991][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-05-19 06:40:55.991][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-05-19 06:40:55.992][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:55.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:55.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:55.994][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-05-19 06:40:55.995][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-05-19 06:40:55.996][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:55.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:55.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:55.997][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-05-19 06:40:55.997][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-05-19 06:40:55.998][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:55.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:55.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:55.999][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-05-19 06:40:55.999][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-05-19 06:40:56.000][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:56.000][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:56.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:56.001][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-05-19 06:40:56.001][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-05-19 06:40:56.001][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:56.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:56.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:56.003][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-05-19 06:40:56.003][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-05-19 06:40:56.003][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:56.004][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:56.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:56.004][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-05-19 06:40:56.005][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-05-19 06:40:56.019][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-05-19 06:40:56.020][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:56.021][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:56.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:56.022][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-05-19 06:40:56.023][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-05-19 06:40:56.024][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-05-19 06:40:56.025][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:56.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:56.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:56.030][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-05-19 06:40:56.059][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-19 06:40:56.068][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-05-19 06:40:56.069][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-19 06:40:56.069][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-19 06:40:56.069][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-19 06:40:56.070][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-19 06:40:56.070][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-19 06:40:56.070][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-19 06:40:56.071][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-19 06:40:56.071][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-19 06:40:56.071][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-19 06:40:56.072][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-05-19 06:40:56.072][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-19 06:40:56.072][self$setPropertyValue]
biodb.DEBUG[2024-05-19 06:40:56.073][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-19 06:40:56.073][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-19 06:40:56.073][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-19 06:40:56.073][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-19 06:40:56.073][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-19 06:40:56.073][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-19 06:40:56.073][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-19 06:40:56.074][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-19 06:40:56.074][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-19 06:40:56.074][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-19 06:40:56.075][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-19 06:40:56.075][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-19 06:40:56.075][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-19 06:40:56.076][self$setPropertyValue]
biodb.DEBUG[2024-05-19 06:40:56.082][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-19 06:40:56.083][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-19 06:40:56.083][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-19 06:40:56.083][self$setPropertyValue]
biodb.DEBUG[2024-05-19 06:40:56.084][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-05-19 06:40:56.085][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-19 06:40:56.085][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-05-19 06:40:56.085][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-19 06:40:56.086][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-19 06:40:56.086][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-19 06:40:56.086][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-19 06:40:56.086][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-19 06:40:56.087][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-19 06:40:56.087][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-19 06:40:56.087][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-19 06:40:56.088][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-19 06:40:56.088][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-05-19 06:40:56.089][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-19 06:40:56.089][self$setPropertyValue]
biodb.DEBUG[2024-05-19 06:40:56.090][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-19 06:40:56.090][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-19 06:40:56.090][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-19 06:40:56.090][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-19 06:40:56.090][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-19 06:40:56.090][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-19 06:40:56.090][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-19 06:40:56.091][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-19 06:40:56.091][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-19 06:40:56.091][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-19 06:40:56.092][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-19 06:40:56.092][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-19 06:40:56.092][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-19 06:40:56.093][self$setPropertyValue]
biodb.DEBUG[2024-05-19 06:40:56.093][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-19 06:40:56.093][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-19 06:40:56.094][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-19 06:40:56.094][self$setPropertyValue]
biodb.DEBUG[2024-05-19 06:40:56.094][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-05-19 06:40:56.095][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-19 06:40:56.096][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-05-19 06:40:56.096][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-19 06:40:56.097][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-19 06:40:56.097][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-19 06:40:56.098][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-19 06:40:56.098][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-19 06:40:56.098][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-19 06:40:56.099][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-19 06:40:56.100][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-19 06:40:56.101][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-19 06:40:56.102][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-05-19 06:40:56.102][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-19 06:40:56.103][self$setPropertyValue]
biodb.DEBUG[2024-05-19 06:40:56.103][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-19 06:40:56.103][self$setPropertyValue]
biodb.DEBUG[2024-05-19 06:40:56.104][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-19 06:40:56.104][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-19 06:40:56.105][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-19 06:40:56.105][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-19 06:40:56.105][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-19 06:40:56.106][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-19 06:40:56.106][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-19 06:40:56.107][self$setPropertyValue]
biodb.DEBUG[2024-05-19 06:40:56.107][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-19 06:40:56.107][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-19 06:40:56.108][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-19 06:40:56.108][self$setPropertyValue]
biodb.DEBUG[2024-05-19 06:40:56.108][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-05-19 06:40:56.109][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-19 06:40:56.110][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-05-19 06:40:56.110][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-19 06:40:56.110][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-19 06:40:56.111][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-19 06:40:56.111][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-19 06:40:56.111][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-19 06:40:56.112][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-19 06:40:56.112][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-19 06:40:56.112][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-19 06:40:56.113][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-19 06:40:56.113][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-05-19 06:40:56.113][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-19 06:40:56.114][self$setPropertyValue]
biodb.DEBUG[2024-05-19 06:40:56.114][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-19 06:40:56.115][self$setPropertyValue]
biodb.DEBUG[2024-05-19 06:40:56.115][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-19 06:40:56.115][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-19 06:40:56.116][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-19 06:40:56.117][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-19 06:40:56.118][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-19 06:40:56.119][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-19 06:40:56.120][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-19 06:40:56.121][self$setPropertyValue]
biodb.DEBUG[2024-05-19 06:40:56.122][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-19 06:40:56.122][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-19 06:40:56.123][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-19 06:40:56.124][self$setPropertyValue]
biodb.DEBUG[2024-05-19 06:40:56.128][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-19 06:40:56.129][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:56.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:56.131][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:56.131][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:40:56.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:40:56.133][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:56.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:56.134][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:56.134][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:40:56.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:40:56.135][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:56.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:56.136][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:56.136][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:40:56.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:40:56.136][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:56.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:56.137][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:56.138][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:40:56.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:40:56.138][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:56.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:56.139][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:56.139][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:40:56.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:40:56.140][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:56.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:56.140][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:56.141][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:40:56.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:40:56.141][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:56.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:56.142][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:56.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:40:56.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:40:56.143][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:56.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:56.143][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:56.144][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:40:56.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:40:56.144][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:56.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:56.145][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:56.145][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:40:56.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:40:56.146][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:56.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:56.146][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:56.147][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:40:56.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:40:56.147][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:56.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:56.148][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:56.148][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:40:56.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:40:56.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:56.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:56.151][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:56.151][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:40:56.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:40:56.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:56.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:56.154][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:56.155][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:40:56.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:40:56.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:56.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:56.159][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:56.160][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:40:56.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:40:56.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:56.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:56.163][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:56.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:40:56.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:40:56.165][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:56.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:56.167][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:56.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:40:56.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:40:56.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:56.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:56.170][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:56.171][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:40:56.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:40:56.172][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:56.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:56.174][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-05-19 06:40:56.187][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-05-19 06:40:56.188][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-05-19 06:40:56.188][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-05-19 06:40:56.189][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-05-19 06:40:56.190][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-05-19 06:40:56.190][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-05-19 06:40:56.191][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-05-19 06:40:56.191][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-05-19 06:40:56.192][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-05-19 06:40:56.192][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-05-19 06:40:56.193][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-05-19 06:40:56.193][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-05-19 06:40:56.194][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-05-19 06:40:56.195][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-05-19 06:40:56.197][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-19 06:40:56.198][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-05-19 06:40:56.199][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-05-19 06:40:56.200][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-05-19 06:40:56.200][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-05-19 06:40:56.201][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-05-19 06:40:56.202][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-05-19 06:40:56.202][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-05-19 06:40:56.203][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-05-19 06:40:56.204][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-05-19 06:40:56.205][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-05-19 06:40:56.206][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-05-19 06:40:56.208][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-05-19 06:40:56.209][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-05-19 06:40:56.210][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-05-19 06:40:56.211][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-05-19 06:40:56.213][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-05-19 06:40:56.214][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-05-19 06:40:56.215][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-05-19 06:40:56.215][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-05-19 06:40:56.216][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-05-19 06:40:56.217][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-05-19 06:40:56.218][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-05-19 06:40:56.219][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-05-19 06:40:56.220][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-05-19 06:40:56.222][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-05-19 06:40:56.223][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-05-19 06:40:56.224][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-05-19 06:40:56.225][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-05-19 06:40:56.226][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-05-19 06:40:56.227][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-05-19 06:40:56.229][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-05-19 06:40:56.230][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-05-19 06:40:56.231][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-05-19 06:40:56.231][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-05-19 06:40:56.232][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-05-19 06:40:56.233][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-05-19 06:40:56.233][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-05-19 06:40:56.234][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-05-19 06:40:56.234][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-05-19 06:40:56.235][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-05-19 06:40:56.235][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-05-19 06:40:56.236][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-05-19 06:40:56.236][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-05-19 06:40:56.238][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-05-19 06:40:56.240][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-05-19 06:40:56.241][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-05-19 06:40:56.243][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-05-19 06:40:56.244][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-05-19 06:40:56.245][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-05-19 06:40:56.246][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-05-19 06:40:56.247][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-05-19 06:40:56.248][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-05-19 06:40:56.249][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-05-19 06:40:56.250][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-05-19 06:40:56.252][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-05-19 06:40:56.253][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-05-19 06:40:56.254][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-05-19 06:40:56.255][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-05-19 06:40:56.256][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-05-19 06:40:56.257][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-05-19 06:40:56.258][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-05-19 06:40:56.258][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-05-19 06:40:56.258][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-05-19 06:40:56.259][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-05-19 06:40:56.259][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-05-19 06:40:56.260][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-05-19 06:40:56.260][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-05-19 06:40:56.263][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-05-19 06:40:56.265][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-05-19 06:40:56.270][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-19 06:40:56.271][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:40:56.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:40:56.273][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:56.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:56.279][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:56.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:40:56.280][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:40:56.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:40:56.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:40:56.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:56.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:56.281][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:56.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:40:56.282][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:40:56.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:40:56.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:40:56.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:56.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:56.284][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:56.284][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:40:56.284][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:40:56.284][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:40:56.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:40:56.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:56.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:56.286][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:56.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:40:56.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:40:56.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:40:56.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:40:56.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:56.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:56.288][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:56.288][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:40:56.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:40:56.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:40:56.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:40:56.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:56.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:56.290][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:56.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:40:56.291][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:40:56.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:40:56.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:40:56.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:56.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:56.329][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:56.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:40:56.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:40:56.331][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:40:56.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:40:56.332][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:56.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:56.334][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:56.335][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:40:56.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:40:56.336][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:40:56.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:40:56.337][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:56.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:56.339][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:56.340][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:40:56.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:40:56.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:40:56.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:40:56.343][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:56.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:56.344][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:56.345][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:40:56.345][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:40:56.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:40:56.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:40:56.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:56.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:56.349][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:56.350][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:40:56.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:40:56.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:40:56.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:40:56.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:56.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:56.354][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:56.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:40:56.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:40:56.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:40:56.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:40:56.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:56.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:56.358][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:56.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:40:56.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:40:56.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:40:56.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:40:56.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:56.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:56.360][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:56.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:40:56.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:40:56.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:40:56.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:40:56.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:56.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:56.362][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:56.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:40:56.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:40:56.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:40:56.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:40:56.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:56.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:56.364][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:56.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:40:56.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:40:56.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:40:56.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:40:56.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:56.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:56.370][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:40:56.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:40:56.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:40:56.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:40:56.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:40:56.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:56.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:40:56.376][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-05-19 06:40:56.385][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-05-19 06:40:56.387][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-19 06:40:56.387][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-05-19 06:40:56.387][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-19 06:40:56.388][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-19 06:40:56.388][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-05-19 06:40:56.389][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-05-19 06:40:56.389][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-19 06:40:56.389][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-19 06:40:56.390][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-19 06:40:56.390][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-19 06:40:56.390][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-19 06:40:56.391][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-05-19 06:40:56.391][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-19 06:40:56.392][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-05-19 06:40:56.392][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-05-19 06:40:56.392][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-05-19 06:40:56.392][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-05-19 06:40:56.392][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-05-19 06:40:56.392][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-05-19 06:40:56.392][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-05-19 06:40:56.392][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-05-19 06:40:56.392][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-05-19 06:40:56.392][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-05-19 06:40:56.392][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-05-19 06:40:56.392][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-05-19 06:40:56.392][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-05-19 06:40:56.392][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-05-19 06:40:56.392][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-05-19 06:40:56.392][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-05-19 06:40:56.392][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-05-19 06:40:56.392][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-05-19 06:40:56.392][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-19 06:40:56.392][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-19 06:40:56.392][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-05-19 06:40:56.392][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-05-19 06:40:56.393][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-05-19 06:40:56.395][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-19 06:40:56.395][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-19 06:40:56.396][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-19 06:40:56.397][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-19 06:40:56.398][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-19 06:40:56.399][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-19 06:40:56.400][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-05-19 06:40:56.400][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-05-19 06:40:56.400][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-19 06:40:56.401][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-19 06:40:56.402][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-19 06:40:56.403][self$setPropertyValue]
biodb.DEBUG[2024-05-19 06:40:56.409][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-05-19 06:40:56.411][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-05-19 06:40:56.412][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-05-19 06:40:56.414][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-05-19 06:40:56.414][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-19 06:40:56.439][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-05-19 06:40:56.441][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-05-19 06:40:56.446][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-05-19 06:40:56.452][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-05-19 06:40:56.457][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-19 06:40:56.459][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-19 06:40:56.460][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-05-19 06:40:56.460][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-05-19 06:40:56.461][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-05-19 06:40:56.461][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-05-19 06:40:56.461][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-19 06:40:56.462][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-19 06:40:56.463][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-05-19 06:40:56.464][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-05-19 06:40:56.465][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-05-19 06:40:56.484][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-05-19 06:40:56.485][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-19 06:40:56.486][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-19 06:40:56.487][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-05-19 06:40:56.488][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-19 06:40:56.489][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-05-19 06:40:56.500][biodb::testThat]
biodb.INFO [2024-05-19 06:40:56.502][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-05-19 06:40:56.503][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-19 06:40:56.503][biodb::testThat]
biodb.TRACE[2024-05-19 06:40:56.508][loadFileContents] Loaded 1 files from cache: [1]: "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2024-05-19 06:40:56.509][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-05-19 06:40:56.512][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-05-19 06:40:56.519][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-19 06:40:56.520][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:40:56.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:40:56.527][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:40:56.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:40:56.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:56.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-19 06:40:56.544][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:40:56.545][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:40:56.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.547][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:40:56.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:40:56.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.563][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:56.563][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:56.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.565][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.586][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:56.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:56.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.588][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-19 06:40:56.589][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-19 06:40:56.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.589][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.590][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-19 06:40:56.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-19 06:40:56.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.593][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-19 06:40:56.593][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-19 06:40:56.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.594][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.596][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-19 06:40:56.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-19 06:40:56.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.601][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-19 06:40:56.602][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-19 06:40:56.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.603][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-19 06:40:56.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-19 06:40:56.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.608][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-19 06:40:56.609][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-19 06:40:56.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.611][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-19 06:40:56.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-19 06:40:56.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.615][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:40:56.615][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:40:56.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.616][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.616][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:40:56.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:40:56.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.618][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:40:56.619][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:40:56.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.619][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.628][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:40:56.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:40:56.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.631][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:40:56.631][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:40:56.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.632][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.633][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:40:56.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:40:56.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.634][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:40:56.635][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:40:56.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.635][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.636][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:40:56.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:40:56.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.638][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-19 06:40:56.638][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-19 06:40:56.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.639][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.639][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-19 06:40:56.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-19 06:40:56.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.641][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-19 06:40:56.641][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-19 06:40:56.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.642][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.642][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-19 06:40:56.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-19 06:40:56.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.644][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-19 06:40:56.644][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:40:56.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.645][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.645][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-19 06:40:56.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:40:56.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.647][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:40:56.647][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:40:56.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.648][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:40:56.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:40:56.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.651][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:40:56.652][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:40:56.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.654][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.655][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:40:56.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:40:56.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.658][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:40:56.659][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:40:56.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.661][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.662][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:40:56.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:40:56.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.665][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-05-19 06:40:56.666][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-19 06:40:56.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.667][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.668][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-19 06:40:56.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-19 06:40:56.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.669][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-05-19 06:40:56.670][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-19 06:40:56.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.671][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.672][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-05-19 06:40:56.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-19 06:40:56.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:40:56.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:40:56.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:40:56.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:40:56.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:40:56.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:40:56.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.700][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-19 06:40:56.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-19 06:40:56.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.709][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-19 06:40:56.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-19 06:40:56.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.712][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-19 06:40:56.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-19 06:40:56.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.713][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-19 06:40:56.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-19 06:40:56.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.714][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-19 06:40:56.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-19 06:40:56.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.716][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-19 06:40:56.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-19 06:40:56.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-19 06:40:56.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-19 06:40:56.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-19 06:40:56.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-19 06:40:56.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-19 06:40:56.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-19 06:40:56.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-19 06:40:56.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-19 06:40:56.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-19 06:40:56.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-19 06:40:56.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-19 06:40:56.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-19 06:40:56.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.730][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:40:56.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:40:56.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.732][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:40:56.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:40:56.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.733][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:40:56.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:40:56.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.735][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:40:56.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:40:56.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.736][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:40:56.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:40:56.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.739][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:40:56.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:40:56.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.742][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-19 06:40:56.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-19 06:40:56.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.743][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-19 06:40:56.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-19 06:40:56.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.746][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-19 06:40:56.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-19 06:40:56.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.747][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:40:56.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:40:56.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.750][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:40:56.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:40:56.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.751][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:40:56.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:40:56.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.753][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-19 06:40:56.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-19 06:40:56.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.756][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-19 06:40:56.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-19 06:40:56.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.760][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-19 06:40:56.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-19 06:40:56.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.763][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-19 06:40:56.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-19 06:40:56.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.764][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-19 06:40:56.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-19 06:40:56.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.766][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-19 06:40:56.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-19 06:40:56.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.767][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-19 06:40:56.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:40:56.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.769][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-19 06:40:56.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:40:56.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.770][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-19 06:40:56.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:40:56.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.772][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:40:56.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:40:56.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.776][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:40:56.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:40:56.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.780][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:40:56.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:40:56.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:40:56.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:40:56.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:40:56.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:40:56.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:40:56.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:40:56.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.797][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:40:56.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:40:56.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.801][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:40:56.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:40:56.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.804][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:40:56.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:40:56.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.807][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:40:56.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:40:56.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.810][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:40:56.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:40:56.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.814][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:40:56.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:40:56.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.817][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:56.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:56.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.818][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:56.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:56.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.820][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:56.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:56.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.821][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-19 06:40:56.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-19 06:40:56.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.823][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-19 06:40:56.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-19 06:40:56.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.824][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-19 06:40:56.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-19 06:40:56.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.828][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-19 06:40:56.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:40:56.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.829][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-19 06:40:56.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:40:56.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.832][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-19 06:40:56.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:40:56.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.833][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-19 06:40:56.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:40:56.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.835][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-19 06:40:56.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:40:56.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.846][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:40:56.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:40:56.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.848][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:40:56.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:40:56.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.850][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:40:56.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:40:56.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.851][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:40:56.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:40:56.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.853][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:40:56.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:40:56.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.857][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-19 06:40:56.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-19 06:40:56.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.861][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-19 06:40:56.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-19 06:40:56.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:40:56.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:40:56.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.868][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-19 06:40:56.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-19 06:40:56.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:40:56.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:40:56.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:40:56.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:40:56.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:40:56.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:40:56.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:40:56.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:40:56.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:40:56.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:40:56.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:40:56.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:40:56.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-19 06:40:56.890][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2024-05-19 06:40:56.891][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-19 06:40:56.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-19 06:40:56.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.893][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-19 06:40:56.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-19 06:40:56.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.897][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-19 06:40:56.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-19 06:40:56.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.900][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-19 06:40:56.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-19 06:40:56.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:40:56.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:40:56.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.930][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-19 06:40:56.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-19 06:40:56.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:40:56.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:40:56.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:40:56.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:40:56.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:40:56.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:40:56.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:40:56.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:40:56.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:40:56.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:40:56.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:40:56.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:40:56.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.962][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-19 06:40:56.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-19 06:40:56.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.966][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-19 06:40:56.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-19 06:40:56.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.969][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-19 06:40:56.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-19 06:40:56.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:40:56.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:40:56.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:40:56.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:40:56.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:40:56.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:40:56.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.995][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:40:56.996][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:40:56.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:56.997][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:56.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:40:56.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:40:57.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.013][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:57.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:57.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.017][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:57.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:57.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.020][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:57.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:57.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.024][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:57.025][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:57.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.027][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.027][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:57.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:57.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-19 06:40:57.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-19 06:40:57.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-19 06:40:57.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-19 06:40:57.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-19 06:40:57.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-19 06:40:57.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.059][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-19 06:40:57.060][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-19 06:40:57.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.062][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.063][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-19 06:40:57.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-19 06:40:57.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.076][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:40:57.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:40:57.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.080][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:40:57.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:40:57.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.083][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:40:57.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:40:57.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.086][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:40:57.087][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:40:57.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.089][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.090][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:40:57.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:40:57.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-19 06:40:57.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-19 06:40:57.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-19 06:40:57.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-19 06:40:57.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-19 06:40:57.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-19 06:40:57.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.113][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-19 06:40:57.114][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-19 06:40:57.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.116][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-19 06:40:57.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-19 06:40:57.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.129][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:40:57.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:40:57.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.134][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:40:57.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:40:57.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.139][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:40:57.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:40:57.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.142][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:40:57.143][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:40:57.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.145][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.146][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:40:57.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:40:57.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.157][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:40:57.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:40:57.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.161][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:40:57.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:40:57.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.164][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:40:57.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:40:57.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.168][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:40:57.169][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:40:57.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.170][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.171][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:40:57.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:40:57.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.189][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:40:57.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:40:57.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.193][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:40:57.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:40:57.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.196][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:40:57.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:40:57.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.199][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:40:57.200][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:40:57.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.202][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.202][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:40:57.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:40:57.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.214][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-19 06:40:57.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-19 06:40:57.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.218][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-19 06:40:57.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-19 06:40:57.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.222][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-19 06:40:57.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-19 06:40:57.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.225][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-19 06:40:57.226][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-19 06:40:57.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.229][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.229][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-19 06:40:57.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-19 06:40:57.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.242][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-19 06:40:57.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-19 06:40:57.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.246][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-19 06:40:57.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-19 06:40:57.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.249][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-19 06:40:57.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-19 06:40:57.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.253][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-19 06:40:57.254][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-19 06:40:57.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.255][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.256][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-19 06:40:57.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-19 06:40:57.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:40:57.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:40:57.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:40:57.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:40:57.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:40:57.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:40:57.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.279][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:40:57.280][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:40:57.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.281][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.282][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:40:57.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:40:57.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.293][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-19 06:40:57.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-19 06:40:57.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.297][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-19 06:40:57.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-19 06:40:57.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.300][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-19 06:40:57.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-19 06:40:57.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.304][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-19 06:40:57.305][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-19 06:40:57.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.306][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.307][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-19 06:40:57.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-19 06:40:57.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.318][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:40:57.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:40:57.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.329][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:40:57.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:40:57.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.332][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:40:57.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:40:57.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.335][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:40:57.336][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:40:57.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.338][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.338][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:40:57.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:40:57.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.350][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:40:57.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:40:57.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.354][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:40:57.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:40:57.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.359][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:40:57.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:40:57.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.363][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:40:57.364][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:40:57.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.365][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.366][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:40:57.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:40:57.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.378][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-19 06:40:57.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-19 06:40:57.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.382][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-19 06:40:57.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-19 06:40:57.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.386][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-19 06:40:57.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-19 06:40:57.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.389][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-05-19 06:40:57.390][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-19 06:40:57.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.392][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.392][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-19 06:40:57.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-19 06:40:57.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.404][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-19 06:40:57.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-19 06:40:57.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.408][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-19 06:40:57.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-19 06:40:57.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.412][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-19 06:40:57.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-19 06:40:57.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.415][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-19 06:40:57.416][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-19 06:40:57.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.417][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.418][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-19 06:40:57.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-19 06:40:57.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.430][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-19 06:40:57.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:40:57.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.434][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-19 06:40:57.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:40:57.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.437][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-19 06:40:57.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:40:57.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.440][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-19 06:40:57.441][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:40:57.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.443][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.444][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-19 06:40:57.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:40:57.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.456][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-19 06:40:57.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-19 06:40:57.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.460][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-19 06:40:57.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-19 06:40:57.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.470][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-19 06:40:57.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-19 06:40:57.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.473][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-19 06:40:57.474][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-19 06:40:57.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.476][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.477][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-19 06:40:57.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-19 06:40:57.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.488][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:40:57.489][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:40:57.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.491][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.496][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-19 06:40:57.497][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-19 06:40:57.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.498][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.503][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-19 06:40:57.504][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-19 06:40:57.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.505][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.510][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-19 06:40:57.511][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-19 06:40:57.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.513][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.518][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-19 06:40:57.519][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-19 06:40:57.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.521][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.526][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:40:57.528][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:40:57.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.529][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.535][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:40:57.536][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:40:57.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.538][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.543][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-19 06:40:57.544][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-19 06:40:57.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.546][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.551][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:40:57.553][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:40:57.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.554][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.559][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-19 06:40:57.560][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-19 06:40:57.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.563][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.569][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-19 06:40:57.570][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-19 06:40:57.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.572][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.576][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-19 06:40:57.578][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:40:57.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.579][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.584][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:40:57.585][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:40:57.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.586][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.592][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:40:57.593][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:40:57.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.594][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.600][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:40:57.601][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:40:57.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.603][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.607][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:40:57.608][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:40:57.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.610][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.615][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:57.616][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:57.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.618][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.630][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-05-19 06:40:57.631][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-19 06:40:57.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.633][ef$get] fields variable is a list.
biodb.INFO [2024-05-19 06:40:57.642][biodb::testThat]
biodb.INFO [2024-05-19 06:40:57.644][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-05-19 06:40:57.645][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-19 06:40:57.645][biodb::testThat]
biodb.DEBUG[2024-05-19 06:40:57.661][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-05-19 06:40:57.671][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-05-19 06:40:57.678][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-19 06:40:57.680][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-05-19 06:40:57.682][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-05-19 06:40:57.683][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-19 06:40:57.686][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-05-19 06:40:57.687][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-05-19 06:40:57.712][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-05-19 06:40:57.714][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-05-19 06:40:57.716][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-19 06:40:57.717][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:40:57.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:40:57.723][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:40:57.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:40:57.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:40:57.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-19 06:40:57.730][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:40:57.731][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:40:57.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.733][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:40:57.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:40:57.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.738][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:57.739][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:57.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.741][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.742][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:57.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:57.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.745][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-19 06:40:57.746][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-19 06:40:57.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.748][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.749][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-19 06:40:57.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-19 06:40:57.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.752][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-19 06:40:57.753][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-19 06:40:57.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.755][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.756][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-19 06:40:57.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-19 06:40:57.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.759][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-19 06:40:57.760][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-19 06:40:57.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.761][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-19 06:40:57.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-19 06:40:57.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.766][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-19 06:40:57.767][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-19 06:40:57.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.768][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-19 06:40:57.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-19 06:40:57.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.772][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:40:57.773][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:40:57.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.782][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.784][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:40:57.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:40:57.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.787][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:40:57.788][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:40:57.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.790][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.791][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:40:57.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:40:57.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.794][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:40:57.795][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:40:57.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.796][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.798][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:40:57.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:40:57.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.801][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:40:57.802][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:40:57.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.803][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.804][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:40:57.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:40:57.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.808][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-19 06:40:57.809][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-19 06:40:57.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.810][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.811][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-19 06:40:57.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-19 06:40:57.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.814][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-19 06:40:57.815][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-19 06:40:57.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.817][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.818][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-19 06:40:57.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-19 06:40:57.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.821][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-19 06:40:57.822][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:40:57.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.823][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.825][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-19 06:40:57.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:40:57.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.828][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:40:57.829][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:40:57.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.830][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:40:57.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:40:57.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.835][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:40:57.835][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:40:57.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.837][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.838][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:40:57.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:40:57.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.841][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:40:57.842][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:40:57.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.845][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.846][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:40:57.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:40:57.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.850][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-05-19 06:40:57.851][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-19 06:40:57.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.852][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.853][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-19 06:40:57.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-19 06:40:57.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.857][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-05-19 06:40:57.858][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-19 06:40:57.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.859][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.860][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-05-19 06:40:57.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-19 06:40:57.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:40:57.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:40:57.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:40:57.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:40:57.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:40:57.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:40:57.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.875][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-19 06:40:57.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-19 06:40:57.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.878][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-19 06:40:57.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-19 06:40:57.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.882][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-19 06:40:57.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-19 06:40:57.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.885][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-19 06:40:57.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-19 06:40:57.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.888][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-19 06:40:57.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-19 06:40:57.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.891][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-19 06:40:57.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-19 06:40:57.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-19 06:40:57.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-19 06:40:57.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-19 06:40:57.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-19 06:40:57.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.909][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-19 06:40:57.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-19 06:40:57.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-19 06:40:57.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-19 06:40:57.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.916][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-19 06:40:57.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-19 06:40:57.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-19 06:40:57.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-19 06:40:57.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.922][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:40:57.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:40:57.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.927][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:40:57.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:40:57.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.931][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:40:57.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:40:57.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.934][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:40:57.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:40:57.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.937][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:40:57.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:40:57.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.941][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:40:57.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:40:57.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.944][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-19 06:40:57.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-19 06:40:57.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.947][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-19 06:40:57.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-19 06:40:57.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.950][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-19 06:40:57.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-19 06:40:57.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.954][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:40:57.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:40:57.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.957][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:40:57.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:40:57.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.960][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:40:57.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:40:57.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.964][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-19 06:40:57.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-19 06:40:57.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.967][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-19 06:40:57.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-19 06:40:57.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.970][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-19 06:40:57.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-19 06:40:57.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.973][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-19 06:40:57.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-19 06:40:57.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.977][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-19 06:40:57.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-19 06:40:57.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.980][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-19 06:40:57.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-19 06:40:57.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.983][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-19 06:40:57.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:40:57.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.986][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-19 06:40:57.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:40:57.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.990][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-19 06:40:57.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:40:57.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.993][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:40:57.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:40:57.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.996][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:40:57.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:40:57.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:57.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:57.999][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:40:58.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:40:58.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:40:58.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:40:58.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.006][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:40:58.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:40:58.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:40:58.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:40:58.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.013][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:40:58.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:40:58.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.017][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:40:58.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:40:58.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.021][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:40:58.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:40:58.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.031][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:40:58.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:40:58.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.035][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:40:58.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:40:58.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.039][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:40:58.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:40:58.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.042][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:58.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:58.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.045][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:58.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:58.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.049][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:58.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:58.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.052][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-19 06:40:58.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-19 06:40:58.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.055][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-19 06:40:58.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-19 06:40:58.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.058][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-19 06:40:58.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-19 06:40:58.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.062][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-19 06:40:58.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:40:58.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.065][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-19 06:40:58.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:40:58.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.068][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-19 06:40:58.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:40:58.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.071][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-19 06:40:58.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:40:58.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.074][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-19 06:40:58.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:40:58.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.079][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:40:58.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:40:58.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.082][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:40:58.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:40:58.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.085][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:40:58.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:40:58.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.088][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:40:58.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:40:58.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.091][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:40:58.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:40:58.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.095][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-19 06:40:58.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-19 06:40:58.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.098][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-19 06:40:58.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-19 06:40:58.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:40:58.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:40:58.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.104][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-19 06:40:58.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-19 06:40:58.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:40:58.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:40:58.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:40:58.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:40:58.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:40:58.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:40:58.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:40:58.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:40:58.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:40:58.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:40:58.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:40:58.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:40:58.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-19 06:40:58.126][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-05-19 06:40:58.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-19 06:40:58.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-19 06:40:58.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-19 06:40:58.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-19 06:40:58.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-19 06:40:58.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-19 06:40:58.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-19 06:40:58.150][biodb::testThat]
biodb.INFO [2024-05-19 06:40:58.152][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-05-19 06:40:58.152][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-19 06:40:58.153][biodb::testThat]
biodb.TRACE[2024-05-19 06:40:58.156][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:40:58.157][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:40:58.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.159][ef$get] fields variable is a list.
biodb.DEBUG[2024-05-19 06:40:58.160][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2024-05-19 06:40:58.187][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:40:58.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:40:58.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.192][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:40:58.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:40:58.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.195][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:40:58.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:40:58.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-19 06:40:58.201][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2024-05-19 06:40:58.203][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-05-19 06:40:58.203][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-05-19 06:40:58.204][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-05-19 06:40:58.206][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-19 06:40:58.207][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-19 06:40:58.208][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-19 06:40:58.210][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-19 06:40:58.210][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-19 06:40:58.211][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-19 06:40:58.214][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-19 06:40:58.216][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-19 06:40:58.217][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-05-19 06:40:58.218][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-05-19 06:40:58.219][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-05-19 06:40:58.221][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:40:58.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:40:58.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.225][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:40:58.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:40:58.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.228][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:40:58.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:40:58.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.232][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:40:58.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:40:58.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-19 06:40:58.235][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-05-19 06:40:58.236][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-05-19 06:40:58.237][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-05-19 06:40:58.251][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:40:58.253][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:40:58.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.254][ef$get] fields variable is a list.
biodb.DEBUG[2024-05-19 06:40:58.256][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2024-05-19 06:40:58.269][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:40:58.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:40:58.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.273][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:40:58.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:40:58.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.276][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:40:58.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:40:58.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-19 06:40:58.283][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2024-05-19 06:40:58.347][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-05-19 06:40:58.348][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-05-19 06:40:58.349][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-05-19 06:40:58.364][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-19 06:40:58.366][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-19 06:40:58.368][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-19 06:40:58.369][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-19 06:40:58.370][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-19 06:40:58.385][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-19 06:40:58.387][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-19 06:40:58.388][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-19 06:40:58.389][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-05-19 06:40:58.390][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-05-19 06:40:58.391][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-05-19 06:40:58.393][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:40:58.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:40:58.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.396][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:40:58.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:40:58.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.400][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:40:58.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:40:58.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.404][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:40:58.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:40:58.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-19 06:40:58.407][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-05-19 06:40:58.408][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-05-19 06:40:58.409][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-05-19 06:40:58.430][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:58.431][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:58.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.433][ef$get] fields variable is a list.
biodb.DEBUG[2024-05-19 06:40:58.434][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2024-05-19 06:40:58.447][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:58.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:58.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.451][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:58.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:58.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.456][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:58.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:58.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-19 06:40:58.462][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2024-05-19 06:40:58.464][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2024-05-19 06:40:58.465][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-05-19 06:40:58.466][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-05-19 06:40:58.467][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-19 06:40:58.469][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-19 06:40:58.470][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-19 06:40:58.472][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-19 06:40:58.473][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-19 06:40:58.474][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-19 06:40:58.475][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-19 06:40:58.476][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-19 06:40:58.477][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-05-19 06:40:58.478][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-05-19 06:40:58.478][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-05-19 06:40:58.481][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:58.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:58.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.485][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:58.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:58.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.489][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:58.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:58.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.492][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:58.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-19 06:40:58.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-19 06:40:58.495][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-05-19 06:40:58.496][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-05-19 06:40:58.497][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2024-05-19 06:40:58.513][biodb::testThat]
biodb.INFO [2024-05-19 06:40:58.515][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-05-19 06:40:58.516][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-19 06:40:58.516][biodb::testThat]
biodb.TRACE[2024-05-19 06:40:58.529][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:40:58.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:40:58.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.534][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:40:58.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:40:58.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.538][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:40:58.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:40:58.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-19 06:40:58.554][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-05-19 06:40:58.555][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-05-19 06:40:58.556][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-05-19 06:40:58.558][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-19 06:40:58.560][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-19 06:40:58.561][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-19 06:40:58.562][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-19 06:40:58.563][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-19 06:40:58.564][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-19 06:40:58.565][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-19 06:40:58.567][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-19 06:40:58.567][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-05-19 06:40:58.569][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-05-19 06:40:58.570][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-05-19 06:40:58.572][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:40:58.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:40:58.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.575][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:40:58.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:40:58.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.587][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:40:58.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:40:58.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.591][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:40:58.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:40:58.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-19 06:40:58.594][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-05-19 06:40:58.595][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2024-05-19 06:40:58.611][biodb::testThat]
biodb.INFO [2024-05-19 06:40:58.612][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-05-19 06:40:58.613][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-19 06:40:58.614][biodb::testThat]
biodb.TRACE[2024-05-19 06:40:58.634][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-19 06:40:58.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-19 06:40:58.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.638][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-19 06:40:58.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-19 06:40:58.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.641][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-19 06:40:58.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-19 06:40:58.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.644][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-19 06:40:58.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-19 06:40:58.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.688][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-19 06:40:58.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-19 06:40:58.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.692][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-19 06:40:58.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-19 06:40:58.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.695][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-19 06:40:58.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-19 06:40:58.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:40:58.699][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-19 06:40:58.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-19 06:40:58.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:40:58.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-19 06:40:58.716][biodb::testThat]
biodb.INFO [2024-05-19 06:40:58.717][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-05-19 06:40:58.718][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-19 06:40:58.718][biodb::testThat]
biodb.INFO [2024-05-19 06:40:58.727][biodb::testThat]
biodb.INFO [2024-05-19 06:40:58.728][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-05-19 06:40:58.729][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-19 06:40:58.730][biodb::testThat]
biodb.INFO [2024-05-19 06:40:58.738][biodb::testThat]
biodb.INFO [2024-05-19 06:40:58.739][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-05-19 06:40:58.740][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-19 06:40:58.741][biodb::testThat]
biodb.DEBUG[2024-05-19 06:40:58.745][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2024-05-19 06:41:10.253][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2024-05-19 06:41:10.752][biodb::testThat]
biodb.INFO [2024-05-19 06:41:10.754][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-05-19 06:41:10.755][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-19 06:41:10.756][biodb::testThat]
biodb.DEBUG[2024-05-19 06:41:11.900][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2024-05-19 06:41:12.081][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:41:12.083][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:41:12.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:12.085][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:12.086][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:12.088][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:12.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:12.090][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:12.091][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-19 06:41:12.092][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-19 06:41:12.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:12.093][ef$get] fields variable is a list.
biodb.INFO [2024-05-19 06:41:12.095][biodb::testThat]
biodb.INFO [2024-05-19 06:41:12.096][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2024-05-19 06:41:12.097][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-19 06:41:12.098][biodb::testThat]
biodb.DEBUG[2024-05-19 06:41:12.100][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2024-05-19 06:41:12.159][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-05-19 06:41:12.164][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-19 06:41:12.166][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-05-19 06:41:12.182][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2024-05-19 06:41:12.184][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-05-19 06:41:12.185][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-19 06:41:12.186][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-05-19 06:41:12.187][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-19 06:41:12.188][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-05-19 06:41:12.190][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-05-19 06:41:12.191][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-19 06:41:12.192][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:12.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:12.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:12.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:12.201][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-19 06:41:12.204][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-19 06:41:12.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-19 06:41:12.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:12.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:12.208][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-19 06:41:12.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-19 06:41:12.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:12.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:12.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:12.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:12.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:12.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:12.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:12.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:12.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:12.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:12.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:12.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:12.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:12.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:12.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:12.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:12.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:12.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:12.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:12.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:12.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:12.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:12.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:12.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:12.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:12.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-19 06:41:12.232][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-05-19 06:41:12.233][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2024-05-19 06:41:12.252][biodb::testThat]
biodb.INFO [2024-05-19 06:41:12.253][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2024-05-19 06:41:12.254][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-19 06:41:12.255][biodb::testThat]
biodb.DEBUG[2024-05-19 06:41:12.266][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2024-05-19 06:41:12.267][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2024-05-19 06:41:12.268][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-05-19 06:41:12.271][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-19 06:41:12.316][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-05-19 06:41:12.319][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2024-05-19 06:41:12.320][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-05-19 06:41:12.322][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-19 06:41:12.323][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-05-19 06:41:12.324][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-19 06:41:12.325][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-05-19 06:41:12.326][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-05-19 06:41:12.328][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-19 06:41:12.329][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:12.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:12.336][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:12.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:12.338][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-19 06:41:12.341][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-19 06:41:12.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-19 06:41:12.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:12.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:12.344][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-19 06:41:12.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-19 06:41:12.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:12.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:12.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:12.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:12.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:12.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:12.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:12.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:12.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:12.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:12.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:12.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:12.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:12.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:12.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:12.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:12.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:12.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:12.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:12.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:12.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:12.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:12.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:12.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:12.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:12.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-19 06:41:12.371][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-05-19 06:41:12.371][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2024-05-19 06:41:12.372][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2024-05-19 06:41:12.387][biodb::testThat]
biodb.INFO [2024-05-19 06:41:12.388][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2024-05-19 06:41:12.389][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-19 06:41:12.390][biodb::testThat]
biodb.INFO [2024-05-19 06:41:12.416][biodb::testThat]
biodb.INFO [2024-05-19 06:41:12.417][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2024-05-19 06:41:12.418][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-19 06:41:12.419][biodb::testThat]
biodb.DEBUG[2024-05-19 06:41:12.422][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-19 06:41:12.423][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-19 06:41:12.424][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-19 06:41:12.426][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-19 06:41:12.426][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-19 06:41:12.428][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-19 06:41:12.429][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-19 06:41:12.430][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-19 06:41:12.431][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2024-05-19 06:41:12.446][biodb::testThat]
biodb.INFO [2024-05-19 06:41:12.447][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2024-05-19 06:41:12.448][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-19 06:41:12.449][biodb::testThat]
biodb.DEBUG[2024-05-19 06:41:12.451][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-19 06:41:12.453][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-19 06:41:12.454][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-19 06:41:12.455][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-19 06:41:12.456][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-19 06:41:12.457][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-19 06:41:12.458][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-19 06:41:12.459][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-19 06:41:12.460][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2024-05-19 06:41:12.469][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:41:12.471][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:41:12.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:12.473][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:12.474][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:12.475][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:12.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:12.477][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:12.478][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-19 06:41:12.479][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-19 06:41:12.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:12.480][ef$get] fields variable is a list.
biodb.INFO [2024-05-19 06:41:12.481][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-05-19 06:41:12.482][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-05-19 06:41:12.491][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-05-19 06:41:12.492][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-05-19 06:41:12.492][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:12.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:12.494][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:12.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:12.496][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-05-19 06:41:12.501][biodb::testContext]
biodb.INFO [2024-05-19 06:41:12.502][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-19 06:41:12.503][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2024-05-19 06:41:12.504][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-19 06:41:12.504][biodb::testContext]
biodb.INFO [2024-05-19 06:41:12.510][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-05-19 06:41:12.511][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-05-19 06:41:12.517][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-19 06:41:12.518][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-05-19 06:41:12.519][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-05-19 06:41:12.520][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.521][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.523][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-05-19 06:41:12.523][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-05-19 06:41:12.524][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.526][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-05-19 06:41:12.527][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-05-19 06:41:12.528][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.530][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-05-19 06:41:12.531][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-05-19 06:41:12.532][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-05-19 06:41:12.533][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.535][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-05-19 06:41:12.536][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-05-19 06:41:12.537][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-05-19 06:41:12.537][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.540][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-05-19 06:41:12.540][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-05-19 06:41:12.541][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.543][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-05-19 06:41:12.544][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-05-19 06:41:12.545][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-05-19 06:41:12.546][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.548][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-05-19 06:41:12.549][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-05-19 06:41:12.550][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.550][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.560][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-05-19 06:41:12.561][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-05-19 06:41:12.562][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-05-19 06:41:12.563][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.565][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-05-19 06:41:12.566][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-05-19 06:41:12.567][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-05-19 06:41:12.568][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-05-19 06:41:12.569][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-05-19 06:41:12.570][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-05-19 06:41:12.570][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.573][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-05-19 06:41:12.574][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-05-19 06:41:12.574][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.577][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-05-19 06:41:12.577][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-05-19 06:41:12.578][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.580][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-05-19 06:41:12.581][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-05-19 06:41:12.582][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.584][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-05-19 06:41:12.585][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-05-19 06:41:12.586][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.587][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.588][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-05-19 06:41:12.589][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-05-19 06:41:12.590][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.592][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-05-19 06:41:12.593][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-05-19 06:41:12.609][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-05-19 06:41:12.611][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.614][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-05-19 06:41:12.615][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-05-19 06:41:12.615][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-05-19 06:41:12.616][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.617][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.619][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-05-19 06:41:12.621][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-19 06:41:12.622][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-05-19 06:41:12.623][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-19 06:41:12.623][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-19 06:41:12.624][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-19 06:41:12.625][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-19 06:41:12.626][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-19 06:41:12.627][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-19 06:41:12.628][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-19 06:41:12.628][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-19 06:41:12.629][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-19 06:41:12.630][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-05-19 06:41:12.631][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-19 06:41:12.632][self$setPropertyValue]
biodb.DEBUG[2024-05-19 06:41:12.633][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-19 06:41:12.633][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-19 06:41:12.633][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-19 06:41:12.633][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-19 06:41:12.633][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-19 06:41:12.633][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-19 06:41:12.634][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-19 06:41:12.635][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-19 06:41:12.636][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-19 06:41:12.637][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-19 06:41:12.637][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-19 06:41:12.638][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-19 06:41:12.639][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-19 06:41:12.640][self$setPropertyValue]
biodb.DEBUG[2024-05-19 06:41:12.640][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-19 06:41:12.641][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-19 06:41:12.642][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-19 06:41:12.643][self$setPropertyValue]
biodb.DEBUG[2024-05-19 06:41:12.644][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-05-19 06:41:12.646][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-19 06:41:12.647][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-05-19 06:41:12.648][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-19 06:41:12.648][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-19 06:41:12.649][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-19 06:41:12.650][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-19 06:41:12.651][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-19 06:41:12.652][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-19 06:41:12.653][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-19 06:41:12.654][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-19 06:41:12.655][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-19 06:41:12.656][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-05-19 06:41:12.657][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-19 06:41:12.658][self$setPropertyValue]
biodb.DEBUG[2024-05-19 06:41:12.659][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-19 06:41:12.660][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-19 06:41:12.660][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-19 06:41:12.660][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-19 06:41:12.660][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-19 06:41:12.660][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-19 06:41:12.661][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-19 06:41:12.661][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-19 06:41:12.662][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-19 06:41:12.663][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-19 06:41:12.664][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-19 06:41:12.665][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-19 06:41:12.665][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-19 06:41:12.666][self$setPropertyValue]
biodb.DEBUG[2024-05-19 06:41:12.667][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-19 06:41:12.674][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-19 06:41:12.675][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-19 06:41:12.676][self$setPropertyValue]
biodb.DEBUG[2024-05-19 06:41:12.677][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-05-19 06:41:12.679][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-19 06:41:12.680][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-05-19 06:41:12.681][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-19 06:41:12.682][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-19 06:41:12.682][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-19 06:41:12.683][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-19 06:41:12.684][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-19 06:41:12.685][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-19 06:41:12.685][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-19 06:41:12.686][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-19 06:41:12.687][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-19 06:41:12.688][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-05-19 06:41:12.689][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-19 06:41:12.689][self$setPropertyValue]
biodb.DEBUG[2024-05-19 06:41:12.690][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-19 06:41:12.691][self$setPropertyValue]
biodb.DEBUG[2024-05-19 06:41:12.692][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-19 06:41:12.693][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-19 06:41:12.693][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-19 06:41:12.694][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-19 06:41:12.695][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-19 06:41:12.696][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-19 06:41:12.697][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-19 06:41:12.697][self$setPropertyValue]
biodb.DEBUG[2024-05-19 06:41:12.698][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-19 06:41:12.699][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-19 06:41:12.700][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-19 06:41:12.700][self$setPropertyValue]
biodb.DEBUG[2024-05-19 06:41:12.701][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-05-19 06:41:12.703][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-19 06:41:12.704][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-05-19 06:41:12.705][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-19 06:41:12.705][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-19 06:41:12.706][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-19 06:41:12.707][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-19 06:41:12.708][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-19 06:41:12.709][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-19 06:41:12.709][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-19 06:41:12.710][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-19 06:41:12.711][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-19 06:41:12.712][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-05-19 06:41:12.713][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-19 06:41:12.713][self$setPropertyValue]
biodb.DEBUG[2024-05-19 06:41:12.714][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-19 06:41:12.715][self$setPropertyValue]
biodb.DEBUG[2024-05-19 06:41:12.716][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-19 06:41:12.717][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-19 06:41:12.717][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-19 06:41:12.718][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-19 06:41:12.719][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-19 06:41:12.720][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-19 06:41:12.720][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-19 06:41:12.721][self$setPropertyValue]
biodb.DEBUG[2024-05-19 06:41:12.722][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-19 06:41:12.723][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-19 06:41:12.723][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-19 06:41:12.724][self$setPropertyValue]
biodb.DEBUG[2024-05-19 06:41:12.725][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-19 06:41:12.726][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.727][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:12.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:12.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.731][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:12.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:12.733][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.735][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.735][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:12.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:12.737][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.738][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:12.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:12.741][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.742][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:12.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:12.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.746][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:12.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:12.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.749][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.750][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:12.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:12.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.753][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.754][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:12.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:12.756][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.757][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.758][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:12.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:12.760][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.761][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:12.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:12.771][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.772][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:12.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:12.774][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.776][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:12.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:12.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.779][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:12.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:12.781][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.783][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:12.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:12.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.786][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:12.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:12.788][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.790][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.790][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:12.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:12.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.793][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:12.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:12.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.797][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-05-19 06:41:12.798][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-05-19 06:41:12.799][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-05-19 06:41:12.801][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-05-19 06:41:12.802][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-05-19 06:41:12.803][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-05-19 06:41:12.804][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-05-19 06:41:12.805][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-05-19 06:41:12.806][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-05-19 06:41:12.808][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-05-19 06:41:12.809][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-05-19 06:41:12.810][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-05-19 06:41:12.811][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-05-19 06:41:12.812][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-05-19 06:41:12.813][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-05-19 06:41:12.814][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-19 06:41:12.816][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-05-19 06:41:12.817][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-05-19 06:41:12.818][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-05-19 06:41:12.819][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-05-19 06:41:12.820][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-05-19 06:41:12.821][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-05-19 06:41:12.823][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-05-19 06:41:12.824][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-05-19 06:41:12.825][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-05-19 06:41:12.826][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-05-19 06:41:12.827][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-05-19 06:41:12.828][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-05-19 06:41:12.830][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-05-19 06:41:12.831][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-05-19 06:41:12.832][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-05-19 06:41:12.833][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-05-19 06:41:12.834][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-05-19 06:41:12.835][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-05-19 06:41:12.836][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-05-19 06:41:12.838][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-05-19 06:41:12.839][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-05-19 06:41:12.840][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-05-19 06:41:12.841][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-05-19 06:41:12.842][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-05-19 06:41:12.844][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-05-19 06:41:12.846][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-05-19 06:41:12.847][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-05-19 06:41:12.849][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-05-19 06:41:12.850][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-05-19 06:41:12.851][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-05-19 06:41:12.853][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-05-19 06:41:12.854][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-05-19 06:41:12.855][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-05-19 06:41:12.863][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-05-19 06:41:12.865][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-05-19 06:41:12.867][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-05-19 06:41:12.868][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-05-19 06:41:12.870][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-05-19 06:41:12.871][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-05-19 06:41:12.872][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-05-19 06:41:12.873][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-05-19 06:41:12.874][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-05-19 06:41:12.876][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-05-19 06:41:12.877][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-05-19 06:41:12.878][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-05-19 06:41:12.879][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-05-19 06:41:12.881][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-05-19 06:41:12.882][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-05-19 06:41:12.884][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-05-19 06:41:12.885][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-05-19 06:41:12.886][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-05-19 06:41:12.888][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-05-19 06:41:12.889][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-05-19 06:41:12.890][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-05-19 06:41:12.892][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-05-19 06:41:12.893][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-05-19 06:41:12.894][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-05-19 06:41:12.895][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-05-19 06:41:12.897][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-05-19 06:41:12.898][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-05-19 06:41:12.899][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-05-19 06:41:12.900][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-05-19 06:41:12.902][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-05-19 06:41:12.903][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-05-19 06:41:12.904][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-05-19 06:41:12.905][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-05-19 06:41:12.906][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-05-19 06:41:12.908][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-05-19 06:41:12.910][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-05-19 06:41:12.911][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-19 06:41:12.912][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:12.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:12.914][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.916][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:12.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:12.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:12.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:12.919][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.921][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:12.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:12.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:12.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:12.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.926][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.927][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:12.928][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:12.928][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:12.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:12.930][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.931][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:12.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:12.933][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:12.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:12.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.936][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.937][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:12.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:12.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:12.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:12.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.941][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.942][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:12.943][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:12.944][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:12.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:12.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.947][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:12.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:12.949][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:12.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:12.950][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.951][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.952][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:12.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:12.954][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:12.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:12.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.965][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:12.967][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:12.968][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:12.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:12.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.971][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:12.972][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:12.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:12.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:12.974][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.976][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:12.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:12.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:12.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:12.980][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.981][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:12.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:12.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:12.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:12.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.987][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:12.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:12.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:12.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:12.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.992][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:12.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:12.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:12.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:12.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:12.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:12.997][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:12.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:12.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:12.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:13.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:13.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:13.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:13.002][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:13.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:13.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:13.004][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:13.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:13.006][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:13.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:13.007][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:13.008][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:13.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:13.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:13.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:13.011][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:13.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:13.015][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-05-19 06:41:13.016][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-05-19 06:41:13.019][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-19 06:41:13.020][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-05-19 06:41:13.021][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-19 06:41:13.022][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-19 06:41:13.023][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-05-19 06:41:13.023][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-05-19 06:41:13.024][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-19 06:41:13.025][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-19 06:41:13.026][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-19 06:41:13.027][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-19 06:41:13.028][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-19 06:41:13.029][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-05-19 06:41:13.029][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-19 06:41:13.030][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-05-19 06:41:13.030][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-05-19 06:41:13.030][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-05-19 06:41:13.030][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-05-19 06:41:13.030][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-05-19 06:41:13.030][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-05-19 06:41:13.030][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-05-19 06:41:13.030][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-05-19 06:41:13.030][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-05-19 06:41:13.030][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-05-19 06:41:13.030][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-05-19 06:41:13.030][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-05-19 06:41:13.030][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-05-19 06:41:13.030][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-05-19 06:41:13.030][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-05-19 06:41:13.030][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-05-19 06:41:13.030][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-05-19 06:41:13.030][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-05-19 06:41:13.031][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-19 06:41:13.032][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-19 06:41:13.032][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-05-19 06:41:13.032][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-05-19 06:41:13.033][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-05-19 06:41:13.034][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-19 06:41:13.035][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-19 06:41:13.035][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-19 06:41:13.036][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-19 06:41:13.037][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-19 06:41:13.038][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-19 06:41:13.039][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-05-19 06:41:13.039][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-05-19 06:41:13.039][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-19 06:41:13.040][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-19 06:41:13.041][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-19 06:41:13.042][self$setPropertyValue]
biodb.DEBUG[2024-05-19 06:41:13.043][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-05-19 06:41:13.044][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-05-19 06:41:13.046][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-05-19 06:41:13.047][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-05-19 06:41:13.049][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-19 06:41:13.052][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-05-19 06:41:13.053][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-05-19 06:41:13.054][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-05-19 06:41:13.055][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-05-19 06:41:13.057][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-19 06:41:13.065][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-19 06:41:13.068][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-05-19 06:41:13.069][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-05-19 06:41:13.070][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-05-19 06:41:13.070][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-05-19 06:41:13.071][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-19 06:41:13.072][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-19 06:41:13.072][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-05-19 06:41:13.073][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-05-19 06:41:13.074][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-05-19 06:41:13.075][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-05-19 06:41:13.077][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-19 06:41:13.077][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-19 06:41:13.079][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-05-19 06:41:13.080][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-19 06:41:13.081][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-05-19 06:41:13.082][biodb::testThat]
biodb.INFO [2024-05-19 06:41:13.083][biodb::testThat] Running test function  test.hmdbmetabolite.nbentries  (" HMDB metabolite returns enough entries. ").
biodb.INFO [2024-05-19 06:41:13.084][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-19 06:41:13.085][biodb::testThat]
biodb.DEBUG[2024-05-19 06:41:13.089][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-19 06:41:13.091][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-19 06:41:13.092][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-19 06:41:13.094][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-19 06:41:13.094][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-19 06:41:13.096][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-19 06:41:13.097][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-19 06:41:13.098][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-19 06:41:13.099][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-05-19 06:41:13.102][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2024-05-19 06:41:13.108][biodb::testThat]
biodb.INFO [2024-05-19 06:41:13.110][biodb::testThat] Running test function  test.old.accession  (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2024-05-19 06:41:13.110][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-19 06:41:13.111][biodb::testThat]
biodb.DEBUG[2024-05-19 06:41:13.113][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-05-19 06:41:13.114][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-05-19 06:41:13.116][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-19 06:41:13.117][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-05-19 06:41:13.119][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-05-19 06:41:13.120][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-19 06:41:13.123][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-05-19 06:41:13.125][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-05-19 06:41:13.126][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-05-19 06:41:13.127][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-05-19 06:41:13.129][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-19 06:41:13.130][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:13.130][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:13.136][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:13.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:13.137][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:13.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-19 06:41:13.141][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:13.142][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:13.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.144][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:13.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:13.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.149][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-19 06:41:13.149][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-19 06:41:13.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.151][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.152][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-19 06:41:13.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-19 06:41:13.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.155][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-19 06:41:13.156][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-19 06:41:13.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.158][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.159][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-19 06:41:13.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-19 06:41:13.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.162][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-19 06:41:13.163][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-19 06:41:13.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.164][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.165][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-19 06:41:13.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-19 06:41:13.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.168][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-19 06:41:13.169][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-19 06:41:13.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.171][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-19 06:41:13.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-19 06:41:13.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.182][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-19 06:41:13.183][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-19 06:41:13.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.185][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-19 06:41:13.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-19 06:41:13.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.189][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:41:13.190][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:41:13.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.191][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.192][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:41:13.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:41:13.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.196][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:41:13.197][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:41:13.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.198][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.199][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:41:13.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:41:13.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.203][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:41:13.203][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:41:13.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.205][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.206][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:41:13.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:41:13.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.209][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:41:13.210][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:41:13.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.212][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.213][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:41:13.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:41:13.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.216][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-19 06:41:13.217][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-19 06:41:13.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.218][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.219][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-19 06:41:13.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-19 06:41:13.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.222][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-19 06:41:13.223][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-19 06:41:13.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.225][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.226][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-19 06:41:13.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-19 06:41:13.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.229][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-19 06:41:13.230][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:41:13.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.231][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.232][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-19 06:41:13.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:41:13.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.235][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:41:13.236][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:41:13.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.238][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:41:13.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:41:13.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.242][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:41:13.243][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:41:13.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.244][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.245][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:41:13.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:41:13.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.249][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:13.250][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:13.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.251][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.252][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:13.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:13.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.255][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-05-19 06:41:13.256][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-19 06:41:13.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.258][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.259][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-19 06:41:13.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-19 06:41:13.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.262][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-05-19 06:41:13.263][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-19 06:41:13.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.264][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.265][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-05-19 06:41:13.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-19 06:41:13.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:13.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:13.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:13.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:13.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:13.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:13.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.286][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-19 06:41:13.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-19 06:41:13.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.289][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-19 06:41:13.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-19 06:41:13.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.294][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-19 06:41:13.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-19 06:41:13.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.298][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-19 06:41:13.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-19 06:41:13.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.301][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-19 06:41:13.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-19 06:41:13.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.305][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-19 06:41:13.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-19 06:41:13.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-19 06:41:13.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-19 06:41:13.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-19 06:41:13.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-19 06:41:13.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-19 06:41:13.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-19 06:41:13.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.318][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-19 06:41:13.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-19 06:41:13.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-19 06:41:13.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-19 06:41:13.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-19 06:41:13.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-19 06:41:13.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.328][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:41:13.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:41:13.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.332][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:41:13.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:41:13.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.335][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:41:13.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:41:13.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.339][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:41:13.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:41:13.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.342][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:41:13.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:41:13.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.345][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:41:13.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:41:13.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.349][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-19 06:41:13.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-19 06:41:13.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.352][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-19 06:41:13.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-19 06:41:13.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-19 06:41:13.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-19 06:41:13.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.358][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:13.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:13.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.362][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:13.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:13.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.374][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:13.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:13.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.378][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-19 06:41:13.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-19 06:41:13.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.381][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-19 06:41:13.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-19 06:41:13.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.385][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-19 06:41:13.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-19 06:41:13.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.389][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-19 06:41:13.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-19 06:41:13.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-19 06:41:13.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-19 06:41:13.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.396][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-19 06:41:13.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-19 06:41:13.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.400][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-19 06:41:13.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:41:13.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.404][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-19 06:41:13.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:41:13.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.407][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-19 06:41:13.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:41:13.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.411][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:41:13.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:41:13.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.415][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:41:13.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:41:13.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.418][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:41:13.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:41:13.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:41:13.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:41:13.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:41:13.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:41:13.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.429][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:41:13.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:41:13.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.433][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:41:13.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:41:13.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.436][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:41:13.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:41:13.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.440][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:41:13.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:41:13.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.443][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:41:13.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:41:13.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.446][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:41:13.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:41:13.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.450][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:41:13.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:41:13.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.453][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-19 06:41:13.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-19 06:41:13.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.456][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-19 06:41:13.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-19 06:41:13.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.460][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-19 06:41:13.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-19 06:41:13.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.463][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-19 06:41:13.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-19 06:41:13.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.474][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-19 06:41:13.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-19 06:41:13.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.479][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-19 06:41:13.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-19 06:41:13.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.482][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-19 06:41:13.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:41:13.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.486][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-19 06:41:13.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:41:13.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.489][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-19 06:41:13.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:41:13.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-19 06:41:13.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:41:13.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.496][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-19 06:41:13.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:41:13.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.501][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:41:13.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:41:13.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.506][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:41:13.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:41:13.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.511][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:41:13.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:41:13.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.516][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:41:13.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:41:13.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.519][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:41:13.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:41:13.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.524][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-19 06:41:13.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-19 06:41:13.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.529][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-19 06:41:13.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-19 06:41:13.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:13.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:13.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.537][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-19 06:41:13.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-19 06:41:13.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:13.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:13.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:13.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:13.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:13.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:13.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:13.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:13.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:13.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:13.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:13.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:13.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-19 06:41:13.570][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-05-19 06:41:13.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:13.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:13.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:13.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:13.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:13.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:13.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:13.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:13.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-19 06:41:13.600][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-05-19 06:41:13.602][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-05-19 06:41:13.603][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-05-19 06:41:13.604][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-05-19 06:41:13.605][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:13.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:13.606][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:13.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:13.607][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:13.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-05-19 06:41:13.612][biodb::testContext]
biodb.INFO [2024-05-19 06:41:13.613][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-19 06:41:13.614][biodb::testContext] Test context - Test search of entries
biodb.INFO [2024-05-19 06:41:13.615][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-19 06:41:13.616][biodb::testContext]
biodb.INFO [2024-05-19 06:41:13.621][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-05-19 06:41:13.622][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-05-19 06:41:13.628][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-19 06:41:13.629][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-05-19 06:41:13.630][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-05-19 06:41:13.630][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:13.631][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:13.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:13.633][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-05-19 06:41:13.634][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-05-19 06:41:13.635][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:13.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:13.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:13.637][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-05-19 06:41:13.638][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-05-19 06:41:13.638][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:13.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:13.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:13.641][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-05-19 06:41:13.641][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-05-19 06:41:13.642][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-05-19 06:41:13.643][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:13.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:13.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:13.645][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-05-19 06:41:13.646][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-05-19 06:41:13.647][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-05-19 06:41:13.648][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:13.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:13.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:13.651][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-05-19 06:41:13.651][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-05-19 06:41:13.652][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:13.653][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:13.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:13.654][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-05-19 06:41:13.655][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-05-19 06:41:13.656][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-05-19 06:41:13.657][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:13.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:13.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:13.659][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-05-19 06:41:13.660][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-05-19 06:41:13.661][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:13.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:13.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:13.663][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-05-19 06:41:13.664][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-05-19 06:41:13.665][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-05-19 06:41:13.665][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:13.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:13.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:13.668][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-05-19 06:41:13.668][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-05-19 06:41:13.669][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-05-19 06:41:13.670][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-05-19 06:41:13.671][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-05-19 06:41:13.672][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-05-19 06:41:13.672][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:13.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:13.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:13.674][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-05-19 06:41:13.675][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-05-19 06:41:13.676][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:13.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:13.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:13.678][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-05-19 06:41:13.679][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-05-19 06:41:13.680][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:13.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:13.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:13.682][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-05-19 06:41:13.683][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-05-19 06:41:13.684][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:13.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:13.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:13.686][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-05-19 06:41:13.687][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-05-19 06:41:13.688][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:13.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:13.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:13.690][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-05-19 06:41:13.691][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-05-19 06:41:13.692][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:13.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:13.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:13.701][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-05-19 06:41:13.703][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-05-19 06:41:13.720][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-05-19 06:41:13.721][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:13.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:13.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:13.724][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-05-19 06:41:13.725][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-05-19 06:41:13.725][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-05-19 06:41:13.726][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:13.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:13.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:13.729][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-05-19 06:41:13.730][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-19 06:41:13.731][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-05-19 06:41:13.732][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-19 06:41:13.733][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-19 06:41:13.734][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-19 06:41:13.735][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-19 06:41:13.735][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-19 06:41:13.736][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-19 06:41:13.737][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-19 06:41:13.738][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-19 06:41:13.739][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-19 06:41:13.740][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-05-19 06:41:13.740][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-19 06:41:13.741][self$setPropertyValue]
biodb.DEBUG[2024-05-19 06:41:13.742][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-19 06:41:13.743][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-19 06:41:13.743][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-19 06:41:13.743][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-19 06:41:13.743][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-19 06:41:13.743][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-19 06:41:13.744][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-19 06:41:13.745][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-19 06:41:13.745][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-19 06:41:13.746][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-19 06:41:13.747][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-19 06:41:13.748][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-19 06:41:13.748][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-19 06:41:13.749][self$setPropertyValue]
biodb.DEBUG[2024-05-19 06:41:13.750][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-19 06:41:13.751][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-19 06:41:13.751][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-19 06:41:13.752][self$setPropertyValue]
biodb.DEBUG[2024-05-19 06:41:13.753][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-05-19 06:41:13.755][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-19 06:41:13.756][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-05-19 06:41:13.757][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-19 06:41:13.757][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-19 06:41:13.758][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-19 06:41:13.759][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-19 06:41:13.760][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-19 06:41:13.761][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-19 06:41:13.761][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-19 06:41:13.762][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-19 06:41:13.763][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-19 06:41:13.764][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-05-19 06:41:13.765][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-19 06:41:13.766][self$setPropertyValue]
biodb.DEBUG[2024-05-19 06:41:13.766][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-19 06:41:13.767][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-19 06:41:13.767][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-19 06:41:13.767][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-19 06:41:13.767][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-19 06:41:13.767][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-19 06:41:13.768][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-19 06:41:13.769][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-19 06:41:13.770][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-19 06:41:13.771][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-19 06:41:13.772][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-19 06:41:13.773][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-19 06:41:13.774][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-19 06:41:13.774][self$setPropertyValue]
biodb.DEBUG[2024-05-19 06:41:13.775][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-19 06:41:13.776][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-19 06:41:13.777][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-19 06:41:13.777][self$setPropertyValue]
biodb.DEBUG[2024-05-19 06:41:13.778][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-05-19 06:41:13.780][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-19 06:41:13.781][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-05-19 06:41:13.782][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-19 06:41:13.783][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-19 06:41:13.783][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-19 06:41:13.784][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-19 06:41:13.785][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-19 06:41:13.786][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-19 06:41:13.786][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-19 06:41:13.787][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-19 06:41:13.788][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-19 06:41:13.789][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-05-19 06:41:13.790][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-19 06:41:13.790][self$setPropertyValue]
biodb.DEBUG[2024-05-19 06:41:13.791][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-19 06:41:13.792][self$setPropertyValue]
biodb.DEBUG[2024-05-19 06:41:13.793][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-19 06:41:13.794][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-19 06:41:13.794][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-19 06:41:13.795][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-19 06:41:13.796][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-19 06:41:13.797][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-19 06:41:13.797][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-19 06:41:13.798][self$setPropertyValue]
biodb.DEBUG[2024-05-19 06:41:13.799][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-19 06:41:13.800][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-19 06:41:13.800][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-19 06:41:13.801][self$setPropertyValue]
biodb.DEBUG[2024-05-19 06:41:13.802][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-05-19 06:41:13.804][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-19 06:41:13.811][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-05-19 06:41:13.812][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-19 06:41:13.813][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-19 06:41:13.814][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-19 06:41:13.815][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-19 06:41:13.816][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-19 06:41:13.817][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-19 06:41:13.817][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-19 06:41:13.818][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-19 06:41:13.819][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-19 06:41:13.820][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-05-19 06:41:13.821][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-19 06:41:13.821][self$setPropertyValue]
biodb.DEBUG[2024-05-19 06:41:13.822][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-19 06:41:13.823][self$setPropertyValue]
biodb.DEBUG[2024-05-19 06:41:13.824][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-19 06:41:13.825][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-19 06:41:13.825][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-19 06:41:13.826][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-19 06:41:13.827][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-19 06:41:13.828][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-19 06:41:13.828][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-19 06:41:13.829][self$setPropertyValue]
biodb.DEBUG[2024-05-19 06:41:13.830][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-19 06:41:13.831][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-19 06:41:13.831][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-19 06:41:13.832][self$setPropertyValue]
biodb.DEBUG[2024-05-19 06:41:13.833][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-19 06:41:13.834][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:13.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:13.836][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:13.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:13.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:13.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:13.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:13.839][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:13.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:13.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:13.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:13.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:13.842][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:13.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:13.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:13.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:13.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:13.846][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:13.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:13.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:13.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:13.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:13.849][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:13.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:13.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:13.851][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:13.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:13.853][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:13.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:13.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:13.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:13.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:13.856][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:13.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:13.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:13.858][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:13.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:13.860][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:13.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:13.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:13.862][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:13.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:13.863][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:13.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:13.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:13.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:13.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:13.866][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:13.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:13.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:13.868][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:13.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:13.870][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:13.870][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:13.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:13.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:13.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:13.873][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:13.874][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:13.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:13.875][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:13.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:13.877][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:13.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:13.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:13.879][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:13.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:13.880][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:13.881][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:13.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:13.882][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:13.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:13.883][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:13.884][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:13.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:13.886][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:13.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:13.887][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:13.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:13.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:13.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:13.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:13.891][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:13.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:13.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:13.900][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:13.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:13.901][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-05-19 06:41:13.903][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-05-19 06:41:13.904][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-05-19 06:41:13.905][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-05-19 06:41:13.906][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-05-19 06:41:13.907][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-05-19 06:41:13.908][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-05-19 06:41:13.910][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-05-19 06:41:13.911][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-05-19 06:41:13.912][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-05-19 06:41:13.915][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-05-19 06:41:13.917][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-05-19 06:41:13.920][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-05-19 06:41:13.922][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-05-19 06:41:13.924][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-05-19 06:41:13.926][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-19 06:41:13.927][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-05-19 06:41:13.929][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-05-19 06:41:13.930][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-05-19 06:41:13.932][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-05-19 06:41:13.933][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-05-19 06:41:13.934][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-05-19 06:41:13.936][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-05-19 06:41:13.937][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-05-19 06:41:13.939][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-05-19 06:41:13.940][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-05-19 06:41:13.942][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-05-19 06:41:13.943][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-05-19 06:41:13.944][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-05-19 06:41:13.945][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-05-19 06:41:13.946][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-05-19 06:41:13.948][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-05-19 06:41:13.949][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-05-19 06:41:13.950][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-05-19 06:41:13.951][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-05-19 06:41:13.952][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-05-19 06:41:13.954][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-05-19 06:41:13.955][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-05-19 06:41:13.956][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-05-19 06:41:13.957][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-05-19 06:41:13.958][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-05-19 06:41:13.959][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-05-19 06:41:13.961][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-05-19 06:41:13.962][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-05-19 06:41:13.963][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-05-19 06:41:13.964][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-05-19 06:41:13.965][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-05-19 06:41:13.967][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-05-19 06:41:13.968][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-05-19 06:41:13.969][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-05-19 06:41:13.970][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-05-19 06:41:13.971][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-05-19 06:41:13.972][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-05-19 06:41:13.973][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-05-19 06:41:13.975][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-05-19 06:41:13.976][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-05-19 06:41:13.977][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-05-19 06:41:13.978][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-05-19 06:41:13.979][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-05-19 06:41:13.980][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-05-19 06:41:13.982][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-05-19 06:41:13.983][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-05-19 06:41:13.984][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-05-19 06:41:13.985][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-05-19 06:41:13.986][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-05-19 06:41:13.988][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-05-19 06:41:13.989][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-05-19 06:41:13.991][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-05-19 06:41:13.992][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-05-19 06:41:14.002][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-05-19 06:41:14.004][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-05-19 06:41:14.006][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-05-19 06:41:14.007][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-05-19 06:41:14.008][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-05-19 06:41:14.009][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-05-19 06:41:14.011][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-05-19 06:41:14.012][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-05-19 06:41:14.013][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-05-19 06:41:14.014][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-05-19 06:41:14.015][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-05-19 06:41:14.017][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-05-19 06:41:14.018][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-05-19 06:41:14.019][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-05-19 06:41:14.020][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-05-19 06:41:14.022][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-05-19 06:41:14.023][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-19 06:41:14.024][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:14.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:14.026][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:14.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:14.027][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:14.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:14.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:14.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:14.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:14.031][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:14.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:14.032][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:14.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:14.034][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:14.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:14.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:14.036][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:14.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:14.037][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:14.038][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:14.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:14.039][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:14.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:14.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:14.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:14.042][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:14.043][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:14.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:14.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:14.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:14.046][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:14.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:14.047][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:14.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:14.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:14.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:14.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:14.051][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:14.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:14.052][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:14.053][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:14.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:14.054][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:14.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:14.056][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:14.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:14.057][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:14.058][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:14.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:14.059][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:14.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:14.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:14.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:14.062][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:14.062][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:14.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:14.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:14.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:14.065][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:14.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:14.067][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:14.067][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:14.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:14.069][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:14.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:14.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:14.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:14.072][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:14.072][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:14.073][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:14.074][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:14.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:14.075][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:14.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:14.076][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:14.077][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:14.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:14.078][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:14.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:14.081][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:14.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:14.083][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:14.084][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:14.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:14.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:14.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:14.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:14.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:14.096][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:14.097][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:14.098][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:14.099][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:14.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:14.101][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:14.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:14.102][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:14.103][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:14.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:14.104][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:14.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:14.106][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:14.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:14.107][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:14.108][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:14.108][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:14.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:14.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:14.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:14.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:14.112][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:14.113][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:14.114][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:14.115][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:14.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:14.116][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:14.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:14.118][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-19 06:41:14.118][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:14.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:14.120][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:14.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:14.121][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:14.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:14.124][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-05-19 06:41:14.126][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-05-19 06:41:14.128][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-19 06:41:14.129][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-05-19 06:41:14.130][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-19 06:41:14.130][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-19 06:41:14.131][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-05-19 06:41:14.132][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-05-19 06:41:14.133][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-19 06:41:14.134][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-19 06:41:14.135][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-19 06:41:14.135][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-19 06:41:14.136][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-19 06:41:14.137][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-05-19 06:41:14.138][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-19 06:41:14.139][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-05-19 06:41:14.139][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-05-19 06:41:14.139][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-05-19 06:41:14.139][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-05-19 06:41:14.139][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-05-19 06:41:14.139][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-05-19 06:41:14.139][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-05-19 06:41:14.139][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-05-19 06:41:14.139][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-05-19 06:41:14.139][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-05-19 06:41:14.139][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-05-19 06:41:14.139][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-05-19 06:41:14.139][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-05-19 06:41:14.139][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-05-19 06:41:14.139][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-05-19 06:41:14.139][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-05-19 06:41:14.139][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-05-19 06:41:14.139][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-05-19 06:41:14.140][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-19 06:41:14.141][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-19 06:41:14.141][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-05-19 06:41:14.141][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-05-19 06:41:14.142][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-05-19 06:41:14.142][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-19 06:41:14.143][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-19 06:41:14.144][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-19 06:41:14.145][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-19 06:41:14.145][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-19 06:41:14.146][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-19 06:41:14.147][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-05-19 06:41:14.147][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-05-19 06:41:14.148][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-19 06:41:14.149][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-19 06:41:14.150][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-19 06:41:14.150][self$setPropertyValue]
biodb.DEBUG[2024-05-19 06:41:14.151][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-05-19 06:41:14.153][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-05-19 06:41:14.154][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-05-19 06:41:14.156][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-05-19 06:41:14.157][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-19 06:41:14.160][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-05-19 06:41:14.161][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-05-19 06:41:14.162][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-05-19 06:41:14.164][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-05-19 06:41:14.165][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-19 06:41:14.166][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-19 06:41:14.167][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-05-19 06:41:14.168][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-05-19 06:41:14.168][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-05-19 06:41:14.168][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-05-19 06:41:14.169][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-19 06:41:14.170][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-19 06:41:14.171][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-05-19 06:41:14.171][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-05-19 06:41:14.172][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-05-19 06:41:14.174][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-05-19 06:41:14.175][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-19 06:41:14.175][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-19 06:41:14.177][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-05-19 06:41:14.177][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-19 06:41:14.178][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-05-19 06:41:14.180][biodb::testThat]
biodb.INFO [2024-05-19 06:41:14.180][biodb::testThat] Running test function  test.searchMultipleWordsInDescription  (" We can search for multiple words inside description field. ").
biodb.INFO [2024-05-19 06:41:14.181][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-19 06:41:14.182][biodb::testThat]
biodb.DEBUG[2024-05-19 06:41:14.191][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-05-19 06:41:14.192][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-05-19 06:41:14.193][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-05-19 06:41:14.196][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-19 06:41:14.198][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-19 06:41:14.199][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-19 06:41:14.200][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-19 06:41:14.201][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-19 06:41:14.202][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-19 06:41:14.203][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-19 06:41:14.204][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-19 06:41:14.205][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-05-19 06:41:14.206][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-05-19 06:41:14.207][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2024-05-19 06:41:14.208][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-05-19 06:41:14.209][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-05-19 06:41:14.211][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-19 06:41:14.212][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-05-19 06:41:14.214][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-05-19 06:41:14.215][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-19 06:41:14.218][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-05-19 06:41:14.219][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-05-19 06:41:14.220][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-05-19 06:41:14.221][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-05-19 06:41:14.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-19 06:41:14.223][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:14.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:14.230][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:14.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:14.231][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:14.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-19 06:41:14.237][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:14.239][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:14.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.240][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:14.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:14.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.245][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-19 06:41:14.246][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-19 06:41:14.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.248][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.249][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-19 06:41:14.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-19 06:41:14.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.253][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-19 06:41:14.254][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-19 06:41:14.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.255][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.256][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-19 06:41:14.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-19 06:41:14.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.260][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-19 06:41:14.261][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-19 06:41:14.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.263][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.264][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-19 06:41:14.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-19 06:41:14.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.268][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-19 06:41:14.269][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-19 06:41:14.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.271][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-19 06:41:14.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-19 06:41:14.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.277][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-19 06:41:14.278][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-19 06:41:14.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.279][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.280][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-19 06:41:14.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-19 06:41:14.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.284][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:41:14.285][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:41:14.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.288][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.290][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:41:14.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:41:14.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.294][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:41:14.295][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:41:14.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.304][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.306][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:41:14.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:41:14.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.310][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:41:14.310][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:41:14.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.312][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.313][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:41:14.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:41:14.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.317][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:41:14.318][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:41:14.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.319][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.321][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:41:14.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:41:14.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.324][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-19 06:41:14.325][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-19 06:41:14.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.327][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.328][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-19 06:41:14.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-19 06:41:14.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.332][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-19 06:41:14.333][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-19 06:41:14.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.334][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.335][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-19 06:41:14.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-19 06:41:14.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.339][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-19 06:41:14.340][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:41:14.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.341][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.343][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-19 06:41:14.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:41:14.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.346][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:41:14.347][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:41:14.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.348][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:41:14.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:41:14.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.354][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:41:14.355][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:41:14.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.356][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.357][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:41:14.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:41:14.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.361][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:14.362][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:14.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.363][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.364][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:14.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:14.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.368][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-05-19 06:41:14.369][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-19 06:41:14.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.370][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.371][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-19 06:41:14.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-19 06:41:14.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.375][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-05-19 06:41:14.376][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-19 06:41:14.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.377][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.378][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-05-19 06:41:14.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-19 06:41:14.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:14.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:14.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:14.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:14.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:14.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:14.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.391][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-19 06:41:14.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-19 06:41:14.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.402][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-19 06:41:14.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-19 06:41:14.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.406][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-19 06:41:14.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-19 06:41:14.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.409][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-19 06:41:14.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-19 06:41:14.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.412][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-19 06:41:14.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-19 06:41:14.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.415][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-19 06:41:14.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-19 06:41:14.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-19 06:41:14.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-19 06:41:14.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-19 06:41:14.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-19 06:41:14.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.425][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-19 06:41:14.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-19 06:41:14.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-19 06:41:14.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-19 06:41:14.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.432][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-19 06:41:14.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-19 06:41:14.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-19 06:41:14.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-19 06:41:14.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.438][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:41:14.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:41:14.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.441][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:41:14.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:41:14.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.445][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:41:14.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:41:14.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.448][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:41:14.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:41:14.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.451][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:41:14.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:41:14.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.454][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:41:14.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:41:14.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.458][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-19 06:41:14.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-19 06:41:14.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.461][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-19 06:41:14.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-19 06:41:14.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-19 06:41:14.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-19 06:41:14.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.467][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:14.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:14.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.471][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:14.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:14.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.474][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:14.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:14.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.477][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-19 06:41:14.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-19 06:41:14.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.480][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-19 06:41:14.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-19 06:41:14.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.501][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-19 06:41:14.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-19 06:41:14.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.506][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-19 06:41:14.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-19 06:41:14.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.510][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-19 06:41:14.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-19 06:41:14.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.514][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-19 06:41:14.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-19 06:41:14.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.517][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-19 06:41:14.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:41:14.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.520][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-19 06:41:14.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:41:14.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.524][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-19 06:41:14.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:41:14.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.527][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:41:14.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:41:14.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.530][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:41:14.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:41:14.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.534][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:41:14.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:41:14.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:41:14.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:41:14.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:41:14.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:41:14.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:41:14.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:41:14.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.546][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:41:14.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:41:14.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.550][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:41:14.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:41:14.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.553][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:41:14.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:41:14.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.557][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:41:14.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:41:14.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.561][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:41:14.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:41:14.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.564][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:41:14.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:41:14.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.569][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-19 06:41:14.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-19 06:41:14.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.572][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-19 06:41:14.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-19 06:41:14.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.576][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-19 06:41:14.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-19 06:41:14.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.579][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-19 06:41:14.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-19 06:41:14.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.583][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-19 06:41:14.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-19 06:41:14.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.586][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-19 06:41:14.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-19 06:41:14.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.590][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-19 06:41:14.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:41:14.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.593][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-19 06:41:14.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:41:14.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.606][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-19 06:41:14.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:41:14.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.611][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-19 06:41:14.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:41:14.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.614][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-19 06:41:14.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:41:14.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.619][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:41:14.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:41:14.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.623][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:41:14.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:41:14.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.626][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:41:14.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:41:14.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.630][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:41:14.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:41:14.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.634][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:41:14.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:41:14.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.638][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-19 06:41:14.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-19 06:41:14.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.642][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-19 06:41:14.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-19 06:41:14.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:14.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:14.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.648][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-19 06:41:14.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-19 06:41:14.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:14.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:14.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:14.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:14.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:14.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:14.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:14.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:14.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:14.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:14.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:14.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:14.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-19 06:41:14.673][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-05-19 06:41:14.674][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:14.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:14.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.677][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:14.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:14.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.680][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:14.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:14.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.684][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:14.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:14.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-19 06:41:14.687][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-05-19 06:41:14.688][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-05-19 06:41:14.689][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-19 06:41:14.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:14.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:14.696][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:14.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:14.698][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:14.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:14.700][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-05-19 06:41:14.708][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-05-19 06:41:14.711][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-19 06:41:14.713][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-05-19 06:41:14.715][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-05-19 06:41:14.717][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-19 06:41:14.719][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-05-19 06:41:14.720][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-05-19 06:41:14.721][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-05-19 06:41:14.722][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-05-19 06:41:14.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-19 06:41:14.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:14.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:14.730][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:14.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:14.732][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:14.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-19 06:41:14.736][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:14.737][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:14.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.739][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:14.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:14.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.744][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-19 06:41:14.745][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-19 06:41:14.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.746][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.747][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-19 06:41:14.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-19 06:41:14.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.751][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-19 06:41:14.751][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-19 06:41:14.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.753][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.754][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-19 06:41:14.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-19 06:41:14.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.757][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-19 06:41:14.758][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-19 06:41:14.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.760][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.761][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-19 06:41:14.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-19 06:41:14.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.764][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-19 06:41:14.765][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-19 06:41:14.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.766][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.767][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-19 06:41:14.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-19 06:41:14.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.771][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-19 06:41:14.772][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-19 06:41:14.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.773][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-19 06:41:14.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-19 06:41:14.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.778][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:41:14.778][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:41:14.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.780][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.781][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:41:14.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:41:14.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.784][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:41:14.785][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:41:14.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.787][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.788][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:41:14.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:41:14.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.791][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:41:14.792][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:41:14.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.794][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.795][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:41:14.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:41:14.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.798][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:41:14.799][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:41:14.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.800][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.801][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:41:14.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:41:14.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.805][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-19 06:41:14.813][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-19 06:41:14.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.816][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.817][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-19 06:41:14.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-19 06:41:14.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.822][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-19 06:41:14.823][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-19 06:41:14.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.824][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.826][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-19 06:41:14.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-19 06:41:14.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.829][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-19 06:41:14.830][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:41:14.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.831][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.833][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-19 06:41:14.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:41:14.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.836][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:41:14.837][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:41:14.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.839][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.840][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:41:14.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:41:14.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.843][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:41:14.844][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:41:14.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.846][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.847][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:41:14.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:41:14.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.852][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:14.853][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:14.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.854][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.856][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:14.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:14.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.860][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-05-19 06:41:14.861][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-19 06:41:14.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.863][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.864][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-19 06:41:14.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-19 06:41:14.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.867][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-05-19 06:41:14.868][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-19 06:41:14.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.870][ef$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.871][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-05-19 06:41:14.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-19 06:41:14.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:14.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:14.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:14.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:14.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:14.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:14.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.885][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-19 06:41:14.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-19 06:41:14.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.888][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-19 06:41:14.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-19 06:41:14.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.891][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-19 06:41:14.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-19 06:41:14.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.895][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-19 06:41:14.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-19 06:41:14.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.898][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-19 06:41:14.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-19 06:41:14.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.901][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-19 06:41:14.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-19 06:41:14.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-19 06:41:14.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-19 06:41:14.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-19 06:41:14.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-19 06:41:14.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-19 06:41:14.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-19 06:41:14.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-19 06:41:14.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-19 06:41:14.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-19 06:41:14.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-19 06:41:14.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-19 06:41:14.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-19 06:41:14.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.935][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:41:14.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:41:14.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.938][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:41:14.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:41:14.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.942][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:41:14.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-19 06:41:14.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.945][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:41:14.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:41:14.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.949][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:41:14.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:41:14.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.952][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:41:14.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-19 06:41:14.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.955][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-19 06:41:14.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-19 06:41:14.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.958][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-19 06:41:14.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-19 06:41:14.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.962][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-19 06:41:14.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-19 06:41:14.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.965][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:14.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:14.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.968][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:14.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:14.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.972][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:14.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:14.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.976][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-19 06:41:14.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-19 06:41:14.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.980][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-19 06:41:14.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-19 06:41:14.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.983][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-19 06:41:14.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-19 06:41:14.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.987][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-19 06:41:14.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-19 06:41:14.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.990][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-19 06:41:14.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-19 06:41:14.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-19 06:41:14.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-19 06:41:14.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:14.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:14.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-19 06:41:14.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:41:14.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.000][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-19 06:41:15.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:41:15.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.004][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-19 06:41:15.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:41:15.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.008][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:41:15.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:41:15.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.020][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:41:15.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:41:15.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.027][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:41:15.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-19 06:41:15.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.032][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:41:15.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:41:15.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.036][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:41:15.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:41:15.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:41:15.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-19 06:41:15.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.044][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:41:15.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:41:15.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.048][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:41:15.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:41:15.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.051][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:41:15.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:41:15.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.055][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:41:15.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:41:15.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.058][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:41:15.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:41:15.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.062][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:41:15.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-19 06:41:15.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.066][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-19 06:41:15.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-19 06:41:15.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.070][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-19 06:41:15.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-19 06:41:15.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.073][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-19 06:41:15.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-19 06:41:15.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.077][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-19 06:41:15.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-19 06:41:15.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.081][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-19 06:41:15.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-19 06:41:15.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.085][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-19 06:41:15.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-19 06:41:15.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.088][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-19 06:41:15.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:41:15.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.091][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-19 06:41:15.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:41:15.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.095][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-19 06:41:15.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:41:15.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.098][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-19 06:41:15.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:41:15.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.101][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-19 06:41:15.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-19 06:41:15.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.105][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:41:15.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:41:15.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.109][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:41:15.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:41:15.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.112][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:41:15.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:41:15.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.116][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:41:15.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:41:15.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.129][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-19 06:41:15.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-19 06:41:15.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.135][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-19 06:41:15.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-19 06:41:15.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.138][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-19 06:41:15.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-19 06:41:15.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:15.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:15.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.145][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-19 06:41:15.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-19 06:41:15.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:15.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:15.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:15.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:15.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:15.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:15.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:15.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:15.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:15.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:15.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-19 06:41:15.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-19 06:41:15.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-19 06:41:15.169][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-05-19 06:41:15.170][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:15.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:15.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.174][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:15.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:15.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.177][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:15.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:15.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.180][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:15.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:15.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-19 06:41:15.184][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-05-19 06:41:15.184][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2024-05-19 06:41:15.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-19 06:41:15.187][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:15.188][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:15.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:15.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:15.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:15.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:15.201][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-05-19 06:41:15.202][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-05-19 06:41:15.203][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-05-19 06:41:15.204][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-19 06:41:15.206][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-19 06:41:15.207][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-19 06:41:15.209][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-19 06:41:15.210][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-19 06:41:15.211][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-19 06:41:15.212][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-19 06:41:15.213][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-19 06:41:15.214][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-05-19 06:41:15.215][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-05-19 06:41:15.216][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-05-19 06:41:15.218][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:15.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:15.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.221][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:15.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:15.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.224][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:15.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:15.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.237][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:15.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:15.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.242][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:15.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:15.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.245][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:15.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:15.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.248][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:15.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:15.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-19 06:41:15.252][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-05-19 06:41:15.253][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-05-19 06:41:15.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-19 06:41:15.254][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:15.255][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:15.261][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:15.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:15.263][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:15.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-19 06:41:15.265][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:15.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:15.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.269][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:15.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:15.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.272][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:15.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:15.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.275][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:15.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:15.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.279][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:15.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:15.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.282][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:15.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:15.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.285][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:15.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:15.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-19 06:41:15.288][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-05-19 06:41:15.289][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-05-19 06:41:15.290][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-19 06:41:15.291][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:15.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:15.298][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:15.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:15.300][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:15.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-19 06:41:15.306][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-05-19 06:41:15.307][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-05-19 06:41:15.308][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-05-19 06:41:15.309][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-19 06:41:15.311][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-19 06:41:15.312][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-19 06:41:15.313][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-19 06:41:15.314][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-19 06:41:15.315][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-19 06:41:15.316][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-19 06:41:15.317][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-19 06:41:15.318][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-05-19 06:41:15.320][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-05-19 06:41:15.321][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-05-19 06:41:15.324][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:15.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:15.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.327][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:15.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:15.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.331][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:15.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:15.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.334][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:15.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:15.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.346][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:15.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:15.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.351][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:15.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:15.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.354][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:15.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:15.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-19 06:41:15.358][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-05-19 06:41:15.358][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2024-05-19 06:41:15.359][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-19 06:41:15.360][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:15.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:15.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:15.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:15.369][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:15.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-19 06:41:15.371][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:15.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:15.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.374][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:15.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:15.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.377][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:15.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:15.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.381][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:15.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:15.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.384][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:15.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:15.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.387][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:15.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:15.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-19 06:41:15.390][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-19 06:41:15.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-19 06:41:15.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-19 06:41:15.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-19 06:41:15.394][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-05-19 06:41:15.395][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-05-19 06:41:15.396][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-19 06:41:15.396][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:15.397][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:15.403][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:15.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:15.405][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:15.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-05-19 06:41:15.413][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-05-19 06:41:15.414][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-05-19 06:41:15.415][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-05-19 06:41:15.416][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-05-19 06:41:15.417][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-19 06:41:15.417][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-19 06:41:15.418][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-19 06:41:15.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-19 06:41:15.420][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-05-19 06:41:15.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
> 
> proc.time()
   user  system elapsed 
  8.429   0.527  22.068

Example timings