| Back to Mac ARM64 build report for BioC 3.20 |
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This page was generated on 2024-05-20 11:32:08 -0400 (Mon, 20 May 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4381 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 166/2233 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| bioassayR 1.43.0 (landing page) Daniela Cassol
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | ERROR | skipped | skipped | ||||||||
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To the developers/maintainers of the bioassayR package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: bioassayR |
| Version: 1.43.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data bioassayR |
| StartedAt: 2024-05-18 14:05:34 -0400 (Sat, 18 May 2024) |
| EndedAt: 2024-05-18 14:06:03 -0400 (Sat, 18 May 2024) |
| EllapsedTime: 29.6 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data bioassayR
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* checking for file ‘bioassayR/DESCRIPTION’ ... OK
* preparing ‘bioassayR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘bioassayR.Rmd’ using rmarkdown
Quitting from lines at lines 30-37 [setup] (bioassayR.Rmd)
Error: processing vignette 'bioassayR.Rmd' failed with diagnostics:
there is no package called 'cellHTS2'
--- failed re-building ‘bioassayR.Rmd’
#"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "library(knitr); knit2html('bioassayR.Rmd',options=c('toc',markdown::markdownHTMLOptions(TRUE)))"
#"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "library(knitr); knit('bioassayR.Rmd')"
#pandoc --self-contained --output bioassayR.html -H header.html --from markdown --smart --table-of-contents --template html.template bioassayR.md;
#"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "library(knitrBootstrap); knit_bootstrap('bioassayR.Rmd',show_code=TRUE)"
"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "library(rmarkdown); library(BiocStyle); rmarkdown::render('bioassayR.Rmd')"
Attaching package: ‘BiocStyle’
The following objects are masked from ‘package:rmarkdown’:
html_document, md_document, pdf_document
processing file: bioassayR.Rmd
1/143
2/143 [style]
3/143
4/143 [setup]
Quitting from lines at lines 30-37 [setup] (bioassayR.Rmd)
Error in `library()`:
! there is no package called 'cellHTS2'
Backtrace:
1. base::suppressPackageStartupMessages(...)
3. base::library(cellHTS2)
Execution halted
make: *** [all] Error 1
Error in tools::buildVignettes(dir = ".", tangle = TRUE) :
running 'make' failed
Execution halted