| Back to Mac ARM64 build report for BioC 3.20 |
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This page was generated on 2024-05-13 11:32:15 -0400 (Mon, 13 May 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4378 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2071/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| TCGAbiolinks 2.33.0 (landing page) Tiago Chedraoui Silva
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | ERROR | skipped | skipped | ||||||||
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To the developers/maintainers of the TCGAbiolinks package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: TCGAbiolinks |
| Version: 2.33.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data TCGAbiolinks |
| StartedAt: 2024-05-12 03:33:42 -0400 (Sun, 12 May 2024) |
| EndedAt: 2024-05-12 03:40:15 -0400 (Sun, 12 May 2024) |
| EllapsedTime: 392.4 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data TCGAbiolinks ### ############################################################################## ############################################################################## * checking for file ‘TCGAbiolinks/DESCRIPTION’ ... OK * preparing ‘TCGAbiolinks’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘analysis.Rmd’ using rmarkdown --- finished re-building ‘analysis.Rmd’ --- re-building ‘casestudy.Rmd’ using rmarkdown --- finished re-building ‘casestudy.Rmd’ --- re-building ‘classifiers.Rmd’ using rmarkdown --- finished re-building ‘classifiers.Rmd’ --- re-building ‘clinical.Rmd’ using rmarkdown Error: processing vignette 'clinical.Rmd' failed with diagnostics: pandoc document conversion failed with error 10 --- failed re-building ‘clinical.Rmd’ --- re-building ‘download_prepare.Rmd’ using rmarkdown --- finished re-building ‘download_prepare.Rmd’ --- re-building ‘extension.Rmd’ using rmarkdown --- finished re-building ‘extension.Rmd’ --- re-building ‘index.Rmd’ using rmarkdown --- finished re-building ‘index.Rmd’ --- re-building ‘mutation.Rmd’ using rmarkdown 2024-05-12 03:38:48.145 R[91442:51025964] XType: Using static font registry. --- finished re-building ‘mutation.Rmd’ --- re-building ‘query.Rmd’ using rmarkdown --- finished re-building ‘query.Rmd’ --- re-building ‘stemness_score.Rmd’ using rmarkdown Error: processing vignette 'stemness_score.Rmd' failed with diagnostics: pandoc document conversion failed with error 10 --- failed re-building ‘stemness_score.Rmd’ --- re-building ‘subtypes.Rmd’ using rmarkdown --- finished re-building ‘subtypes.Rmd’ SUMMARY: processing the following files failed: ‘clinical.Rmd’ ‘stemness_score.Rmd’ Error: Vignette re-building failed. Execution halted