| Back to Mac ARM64 build report for BioC 3.20 |
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This page was generated on 2024-05-20 11:32:21 -0400 (Mon, 20 May 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4381 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1964/2233 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SparseArray 1.5.4 (landing page) Hervé Pagès
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | ERROR | ERROR | skipped | skipped | ||||||||
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To the developers/maintainers of the SparseArray package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SparseArray |
| Version: 1.5.4 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SparseArray |
| StartedAt: 2024-05-18 10:12:44 -0400 (Sat, 18 May 2024) |
| EndedAt: 2024-05-18 10:12:50 -0400 (Sat, 18 May 2024) |
| EllapsedTime: 6.5 seconds |
| RetCode: 1 |
| Status: ERROR |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SparseArray
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’
* installing *source* package ‘SparseArray’ ...
** using staged installation
** libs
using C compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’
using SDK: ‘MacOSX11.3.sdk’
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/XVector/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ExtendableJaggedArray.c -o ExtendableJaggedArray.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/XVector/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c IRanges_stubs.c -o IRanges_stubs.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/XVector/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c OPBufTree.c -o OPBufTree.o
OPBufTree.c:200:38: error: initializer element is not a compile-time constant
static OPBufTree global_opbuf_tree = OPBufTree0;
^~~~~~~~~~
1 error generated.
make: *** [OPBufTree.o] Error 1
ERROR: compilation failed for package ‘SparseArray’
* removing ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/SparseArray’
* restoring previous ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/SparseArray’