Back to Mac ARM64 build report for BioC 3.20 |
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This page was generated on 2024-05-20 11:32:21 -0400 (Mon, 20 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4381 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 2026/2233 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
STRINGdb 2.17.1 (landing page) Damian Szklarczyk
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | ERROR | skipped | skipped | ||||||||
To the developers/maintainers of the STRINGdb package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: STRINGdb |
Version: 2.17.1 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data STRINGdb |
StartedAt: 2024-05-19 03:11:20 -0400 (Sun, 19 May 2024) |
EndedAt: 2024-05-19 03:14:56 -0400 (Sun, 19 May 2024) |
EllapsedTime: 216.0 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data STRINGdb ### ############################################################################## ############################################################################## * checking for file ‘STRINGdb/DESCRIPTION’ ... OK * preparing ‘STRINGdb’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘STRINGdb.Rnw’ using Sweave trying URL 'https://stringdb-downloads.org/download/protein.aliases.v12.0/9606.protein.aliases.v12.0.txt.gz' Content type 'application/octet-stream' length 19777800 bytes (18.9 MB) ================================================== downloaded 18.9 MB trying URL 'https://stringdb-downloads.org/download/protein.info.v12.0/9606.protein.info.v12.0.txt.gz' Content type 'application/octet-stream' length 1970090 bytes (1.9 MB) ================================================== downloaded 1.9 MB trying URL 'https://stringdb-downloads.org/download/protein.links.v12.0/9606.protein.links.v12.0.txt.gz' Content type 'application/octet-stream' length 83164437 bytes (79.3 MB) ================================================== downloaded 79.3 MB Error: processing vignette 'STRINGdb.Rnw' failed with diagnostics: Running 'texi2dvi' on 'STRINGdb.tex' failed. LaTeX errors: ! Missing $ inserted. <inserted text> $ l.43 ...on (https://string-db.org/cgi/input?input_ page_active_form=organisms... ! Emergency stop. <inserted text> $ l.43 ...on (https://string-db.org/cgi/input?input_ page_active_form=organisms... ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘STRINGdb.Rnw’ SUMMARY: processing the following file failed: ‘STRINGdb.Rnw’ Error: Vignette re-building failed. Execution halted