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This page was generated on 2024-05-13 11:32:12 -0400 (Mon, 13 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson1macOS 13.6.6 Venturaarm644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4378
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1717/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Risa 1.47.0  (landing page)
Alejandra Gonzalez-Beltran
Snapshot Date: 2024-05-11 09:00:03 -0400 (Sat, 11 May 2024)
git_url: https://git.bioconductor.org/packages/Risa
git_branch: devel
git_last_commit: 8cc4b0e
git_last_commit_date: 2024-04-30 10:28:53 -0400 (Tue, 30 Apr 2024)
kjohnson1macOS 13.6.6 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for Risa on kjohnson1


To the developers/maintainers of the Risa package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: Risa
Version: 1.47.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Risa
StartedAt: 2024-05-12 00:53:27 -0400 (Sun, 12 May 2024)
EndedAt: 2024-05-12 00:54:39 -0400 (Sun, 12 May 2024)
EllapsedTime: 72.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Risa
###
##############################################################################
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* checking for file ‘Risa/DESCRIPTION’ ... OK
* preparing ‘Risa’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Risa.Rnw’ using Sweave
Loading required package: Biobase
Loading required package: BiocGenerics

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, table, tapply,
    union, unique, unsplit, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: Rcpp
Loading required package: biocViews
Loading required package: affy
Loading required package: faahKO
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘faahKO’

Error: processing vignette 'Risa.Rnw' failed with diagnostics:
 chunk 2 (label = Risa-readISAtab) 
Error in find.package("faahKO") : there is no package called ‘faahKO’

--- failed re-building ‘Risa.Rnw’

SUMMARY: processing the following file failed:
  ‘Risa.Rnw’

Error: Vignette re-building failed.
Execution halted