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This page was generated on 2024-05-13 11:32:11 -0400 (Mon, 13 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson1macOS 13.6.6 Venturaarm644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4378
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Package 1681/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Repitools 1.51.0  (landing page)
Mark Robinson
Snapshot Date: 2024-05-11 09:00:03 -0400 (Sat, 11 May 2024)
git_url: https://git.bioconductor.org/packages/Repitools
git_branch: devel
git_last_commit: 62a6cd3
git_last_commit_date: 2024-04-30 10:24:48 -0400 (Tue, 30 Apr 2024)
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

INSTALL results for Repitools on kjohnson1


To the developers/maintainers of the Repitools package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: Repitools
Version: 1.51.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL Repitools
StartedAt: 2024-05-11 11:04:05 -0400 (Sat, 11 May 2024)
EndedAt: 2024-05-11 11:04:51 -0400 (Sat, 11 May 2024)
EllapsedTime: 46.0 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL Repitools
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’
* installing *source* package ‘Repitools’ ...
** using staged installation
** libs
using C compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’
using SDK: ‘MacOSX11.3.sdk’
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include   -D R_NO_REMAP -I. -fPIC  -falign-functions=64 -Wall -g -O2  -c const.c -o const.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include   -D R_NO_REMAP -I. -fPIC  -falign-functions=64 -Wall -g -O2  -c hyp2f1.c -o hyp2f1.o
hyp2f1.c:126:8: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
double hyp2f1( a, b, c, x )
       ^
hyp2f1.c:294:9: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
 double hyt2f1( a, b, c, x, loss )
        ^
hyp2f1.c:438:9: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
 double hys2f1( a, b, c, x, loss )
        ^
3 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c mmeansd.cpp -o mmeansd.o
mmeansd.cpp:33:24: warning: variable 'is' set but not used [-Wunused-but-set-variable]
    int * x, nval, hs, is, i;
                       ^
1 warning generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include   -D R_NO_REMAP -I. -fPIC  -falign-functions=64 -Wall -g -O2  -c mtherr.c -o mtherr.o
mtherr.c:77:5: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
int mtherr( name, code )
    ^
1 warning generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include   -D R_NO_REMAP -I. -fPIC  -falign-functions=64 -Wall -g -O2  -c ringo_stuff.c -o ringo_stuff.o
ringo_stuff.c:13:24: warning: unused variable 'Ringo_calls' [-Wunused-variable]
static R_CallMethodDef Ringo_calls[] = {
                       ^
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o Repitools.so const.o hyp2f1.o mmeansd.o mtherr.o ringo_stuff.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/00LOCK-Repitools/00new/Repitools/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Repitools)