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This page was generated on 2024-05-20 11:32:17 -0400 (Mon, 20 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson1macOS 13.6.6 Venturaarm644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4381
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1522/2233HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Pirat 0.99.25  (landing page)
Samuel Wieczorek
Snapshot Date: 2024-05-18 09:00:01 -0400 (Sat, 18 May 2024)
git_url: https://git.bioconductor.org/packages/Pirat
git_branch: devel
git_last_commit: f59fb0f
git_last_commit_date: 2024-04-30 22:31:35 -0400 (Tue, 30 Apr 2024)
kjohnson1macOS 13.6.6 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for Pirat on kjohnson1


To the developers/maintainers of the Pirat package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: Pirat
Version: 0.99.25
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Pirat
StartedAt: 2024-05-18 23:34:43 -0400 (Sat, 18 May 2024)
EndedAt: 2024-05-18 23:35:20 -0400 (Sat, 18 May 2024)
EllapsedTime: 36.7 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Pirat
###
##############################################################################
##############################################################################


* checking for file ‘Pirat/DESCRIPTION’ ... OK
* preparing ‘Pirat’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Pirat.Rmd’ using rmarkdown
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... failed

PackagesNotFoundError: The following packages are not available from current channels:

  - python=3.9.5

Current channels:

  - https://conda.anaconda.org/pytorch/osx-arm64
  - https://conda.anaconda.org/pytorch/noarch
  - https://conda.anaconda.org/stable/osx-arm64
  - https://conda.anaconda.org/stable/noarch
  - https://conda.anaconda.org/torch/osx-arm64
  - https://conda.anaconda.org/torch/noarch
  - https://repo.anaconda.com/pkgs/main/osx-arm64
  - https://repo.anaconda.com/pkgs/main/noarch
  - https://repo.anaconda.com/pkgs/r/osx-arm64
  - https://repo.anaconda.com/pkgs/r/noarch

To search for alternate channels that may provide the conda package you're
looking for, navigate to

    https://anaconda.org

and use the search bar at the top of the page.



Quitting from lines  at lines 71-72 [impute] (Pirat.Rmd)
Error: processing vignette 'Pirat.Rmd' failed with diagnostics:
Error creating conda environment '/Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.17.0/Pirat/0.99.25/envPirat' [exit code 1]
--- failed re-building ‘Pirat.Rmd’

SUMMARY: processing the following file failed:
  ‘Pirat.Rmd’

Error: Vignette re-building failed.
Execution halted