Back to Mac ARM64 build report for BioC 3.20 |
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This page was generated on 2024-05-20 11:32:16 -0400 (Mon, 20 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4381 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1393/2233 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
NormqPCR 1.51.0 (landing page) James Perkins
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | ||||||||
To the developers/maintainers of the NormqPCR package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: NormqPCR |
Version: 1.51.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:NormqPCR.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings NormqPCR_1.51.0.tar.gz |
StartedAt: 2024-05-19 21:06:53 -0400 (Sun, 19 May 2024) |
EndedAt: 2024-05-19 21:08:25 -0400 (Sun, 19 May 2024) |
EllapsedTime: 92.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: NormqPCR.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:NormqPCR.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings NormqPCR_1.51.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.20-bioc-mac-arm64/meat/NormqPCR.Rcheck’ * using R version 4.4.0 Patched (2024-04-24 r86482) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.6 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘NormqPCR/DESCRIPTION’ ... OK * this is package ‘NormqPCR’ version ‘1.51.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘NormqPCR’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE CqValues,CyclesSet: no visible binding for global variable ‘l5’ Undefined global functions or variables: l5 * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed CqValues 28.306 0.85 29.163 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.20-bioc-mac-arm64/meat/NormqPCR.Rcheck/00check.log’ for details.
NormqPCR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL NormqPCR ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘NormqPCR’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (NormqPCR)
NormqPCR.Rcheck/NormqPCR-Ex.timings
name | user | system | elapsed | |
Bladder | 0.015 | 0.005 | 0.020 | |
BladderRepro | 0.006 | 0.004 | 0.010 | |
Colon | 0.006 | 0.004 | 0.011 | |
ComputeNRQs | 0.165 | 0.005 | 0.173 | |
CqValues | 28.306 | 0.850 | 29.163 | |
NormqPCR-package | 0.001 | 0.000 | 0.001 | |
combineTechReps | 0.040 | 0.002 | 0.042 | |
combineTechRepsSD | 0.075 | 0.002 | 0.076 | |
deltaCt | 0.074 | 0.001 | 0.076 | |
deltaDeltaCt | 0.092 | 0.002 | 0.094 | |
geNorm | 0.008 | 0.003 | 0.011 | |
geomMean | 0 | 0 | 0 | |
makeAllNAs | 0.075 | 0.002 | 0.077 | |
makeAllNewVal | 0.075 | 0.002 | 0.077 | |
replaceAboveCutOff | 0.073 | 0.002 | 0.075 | |
replaceNAs | 0.073 | 0.002 | 0.075 | |
selectHKs | 0.024 | 0.003 | 0.028 | |
stabMeasureM | 0.115 | 0.004 | 0.119 | |
stabMeasureRho | 0.076 | 0.005 | 0.082 | |