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This page was generated on 2024-05-13 11:32:08 -0400 (Mon, 13 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4378 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1284/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Motif2Site 1.9.0 (landing page) Peyman Zarrineh
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | ||||||||
To the developers/maintainers of the Motif2Site package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: Motif2Site |
Version: 1.9.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Motif2Site.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Motif2Site_1.9.0.tar.gz |
StartedAt: 2024-05-12 20:11:17 -0400 (Sun, 12 May 2024) |
EndedAt: 2024-05-12 20:23:08 -0400 (Sun, 12 May 2024) |
EllapsedTime: 711.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: Motif2Site.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Motif2Site.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Motif2Site_1.9.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.20-bioc-mac-arm64/meat/Motif2Site.Rcheck’ * using R version 4.4.0 Patched (2024-04-24 r86482) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.6 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘Motif2Site/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘Motif2Site’ version ‘1.9.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .gitignoreommit These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘Motif2Site’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed pairwisDifferential 162.027 1.608 163.868 recenterBindingSitesAcrossExperiments 159.694 1.675 161.617 Motif2Site 159.548 1.587 161.249 DetectBindingSitesBed 76.039 1.143 77.244 DetectBindingSitesMotif 70.024 0.469 70.515 compareMotifs2UserProvidedRegions 21.768 0.233 22.003 compareBedFiless2UserProvidedRegions 8.698 0.039 8.757 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.20-bioc-mac-arm64/meat/Motif2Site.Rcheck/00check.log’ for details.
Motif2Site.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL Motif2Site ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘Motif2Site’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Motif2Site)
Motif2Site.Rcheck/Motif2Site-Ex.timings
name | user | system | elapsed | |
Bed2Granges | 2.909 | 0.101 | 3.029 | |
DetectBindingSitesBed | 76.039 | 1.143 | 77.244 | |
DetectBindingSitesMotif | 70.024 | 0.469 | 70.515 | |
Motif2Site | 159.548 | 1.587 | 161.249 | |
compareBedFiless2UserProvidedRegions | 8.698 | 0.039 | 8.757 | |
compareMotifs2UserProvidedRegions | 21.768 | 0.233 | 22.003 | |
data | 1.197 | 0.005 | 1.203 | |
pairwisDifferential | 162.027 | 1.608 | 163.868 | |
recenterBindingSitesAcrossExperiments | 159.694 | 1.675 | 161.617 | |