Back to Mac ARM64 build report for BioC 3.20
ABCDEFG[H]IJKLMNOPQRSTUVWXYZ

This page was generated on 2024-05-20 11:32:13 -0400 (Mon, 20 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson1macOS 13.6.6 Venturaarm644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4381
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 943/2233HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HilbertVis 1.63.0  (landing page)
Simon Anders
Snapshot Date: 2024-05-18 09:00:01 -0400 (Sat, 18 May 2024)
git_url: https://git.bioconductor.org/packages/HilbertVis
git_branch: devel
git_last_commit: 8f5a11c
git_last_commit_date: 2024-04-30 10:19:10 -0400 (Tue, 30 Apr 2024)
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

INSTALL results for HilbertVis on kjohnson1


To the developers/maintainers of the HilbertVis package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: HilbertVis
Version: 1.63.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HilbertVis
StartedAt: 2024-05-18 10:07:53 -0400 (Sat, 18 May 2024)
EndedAt: 2024-05-18 10:07:57 -0400 (Sat, 18 May 2024)
EllapsedTime: 3.1 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HilbertVis
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’
* installing *source* package ‘HilbertVis’ ...
** using staged installation
** libs
using C compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’
using SDK: ‘MacOSX11.3.sdk’
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c hilbert.c -o hilbert.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c make_wiggle_vector.c -o make_wiggle_vector.o
make_wiggle_vector.c:16:17: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
         error( buf );
                ^~~
make_wiggle_vector.c:16:17: note: treat the string as an argument to avoid this
         error( buf );
                ^
                "%s", 
1 warning generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c shrink_vector.c -o shrink_vector.o
shrink_vector.c:76:20: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
               if( abs( REAL( vector )[ j ] ) > abs( val ) )
                   ^
shrink_vector.c:76:20: note: use function 'fabs' instead
               if( abs( REAL( vector )[ j ] ) > abs( val ) )
                   ^~~
                   fabs
shrink_vector.c:76:49: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
               if( abs( REAL( vector )[ j ] ) > abs( val ) )
                                                ^
shrink_vector.c:76:49: note: use function 'fabs' instead
               if( abs( REAL( vector )[ j ] ) > abs( val ) )
                                                ^~~
                                                fabs
2 warnings generated.
clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o HilbertVis.so hilbert.o make_wiggle_vector.o shrink_vector.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/00LOCK-HilbertVis/00new/HilbertVis/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HilbertVis)