Back to Mac ARM64 build report for BioC 3.20 |
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This page was generated on 2024-05-20 11:32:13 -0400 (Mon, 20 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4381 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 932/2233 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HiCBricks 1.23.0 (landing page) Koustav Pal
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | ||||||||
To the developers/maintainers of the HiCBricks package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: HiCBricks |
Version: 1.23.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HiCBricks.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HiCBricks_1.23.0.tar.gz |
StartedAt: 2024-05-19 15:53:41 -0400 (Sun, 19 May 2024) |
EndedAt: 2024-05-19 15:56:30 -0400 (Sun, 19 May 2024) |
EllapsedTime: 169.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: HiCBricks.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HiCBricks.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HiCBricks_1.23.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.20-bioc-mac-arm64/meat/HiCBricks.Rcheck’ * using R version 4.4.0 Patched (2024-04-24 r86482) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.6 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘HiCBricks/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘HiCBricks’ version ‘1.23.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HiCBricks’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
HiCBricks.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HiCBricks ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘HiCBricks’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HiCBricks)
HiCBricks.Rcheck/HiCBricks-Ex.timings
name | user | system | elapsed | |
BrickContainer_change_experiment_name | 1.129 | 0.125 | 1.293 | |
BrickContainer_change_output_directory | 0.913 | 0.085 | 1.005 | |
BrickContainer_get_path_to_file | 0.734 | 0.077 | 0.816 | |
BrickContainer_list_chromosomes | 0.720 | 0.079 | 0.806 | |
BrickContainer_list_experiment_name | 0.712 | 0.090 | 0.805 | |
BrickContainer_list_files | 0.745 | 0.089 | 0.855 | |
BrickContainer_list_output_directory | 0.736 | 0.084 | 0.827 | |
BrickContainer_list_resolutions | 0.756 | 0.086 | 0.845 | |
BrickContainer_unlink_resolution | 1.589 | 0.183 | 1.782 | |
Brick_add_ranges | 1.821 | 0.132 | 1.961 | |
Brick_call_compartments | 1.384 | 0.170 | 1.603 | |
Brick_export_to_sparse | 2.467 | 0.236 | 2.729 | |
Brick_fetch_range_index | 0.896 | 0.093 | 0.992 | |
Brick_fetch_row_vector | 1.444 | 0.166 | 1.621 | |
Brick_get_bintable | 0.775 | 0.083 | 0.860 | |
Brick_get_chrominfo | 0.740 | 0.080 | 0.828 | |
Brick_get_entire_matrix | 1.626 | 0.192 | 1.830 | |
Brick_get_matrix | 1.124 | 0.158 | 1.305 | |
Brick_get_matrix_mcols | 1.078 | 0.150 | 1.243 | |
Brick_get_matrix_within_coords | 1.557 | 0.165 | 1.728 | |
Brick_get_ranges | 0.761 | 0.093 | 0.858 | |
Brick_get_values_by_distance | 1.253 | 0.192 | 1.458 | |
Brick_get_vector_values | 1.145 | 0.153 | 1.308 | |
Brick_list_matrices | 0.746 | 0.090 | 0.853 | |
Brick_list_matrix_mcols | 0.716 | 0.097 | 0.819 | |
Brick_list_mcool_normalisations | 0.001 | 0.000 | 0.001 | |
Brick_list_mcool_resolutions | 0.000 | 0.001 | 0.000 | |
Brick_list_rangekeys | 0.737 | 0.101 | 0.844 | |
Brick_list_ranges_mcols | 0.734 | 0.082 | 0.823 | |
Brick_load_cis_matrix_till_distance | 0.985 | 0.146 | 1.161 | |
Brick_load_data_from_mcool | 0.000 | 0.001 | 0.001 | |
Brick_load_data_from_sparse | 0.001 | 0.000 | 0.000 | |
Brick_load_matrix | 1.040 | 0.153 | 1.220 | |
Brick_local_score_differentiator | 1.710 | 0.228 | 1.951 | |
Brick_make_ranges | 0.009 | 0.001 | 0.008 | |
Brick_matrix_dimensions | 1.078 | 0.141 | 1.222 | |
Brick_matrix_exists | 1.110 | 0.154 | 1.320 | |
Brick_matrix_filename | 0.821 | 0.135 | 1.003 | |
Brick_matrix_isdone | 0.986 | 0.220 | 1.252 | |
Brick_matrix_issparse | 1.143 | 0.174 | 1.393 | |
Brick_matrix_maxdist | 1.113 | 0.159 | 1.280 | |
Brick_matrix_minmax | 1.082 | 0.161 | 1.258 | |
Brick_mcool_normalisation_exists | 0.000 | 0.001 | 0.001 | |
Brick_rangekey_exists | 0.735 | 0.088 | 0.852 | |
Brick_return_region_position | 0.819 | 0.091 | 0.913 | |
Brick_vizart_plot_heatmap | 2.141 | 0.212 | 2.365 | |
Create_many_Bricks | 0.755 | 0.081 | 0.841 | |
Create_many_Bricks_from_mcool | 0.000 | 0.000 | 0.001 | |
load_BrickContainer | 0.783 | 0.092 | 0.882 | |