Back to Mac ARM64 build report for BioC 3.20 |
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This page was generated on 2024-05-20 11:32:13 -0400 (Mon, 20 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4381 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 957/2233 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HPiP 1.11.0 (landing page) Matineh Rahmatbakhsh
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | ||||||||
To the developers/maintainers of the HPiP package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: HPiP |
Version: 1.11.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.11.0.tar.gz |
StartedAt: 2024-05-19 16:11:21 -0400 (Sun, 19 May 2024) |
EndedAt: 2024-05-19 16:17:15 -0400 (Sun, 19 May 2024) |
EllapsedTime: 353.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: HPiP.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.11.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.20-bioc-mac-arm64/meat/HPiP.Rcheck’ * using R version 4.4.0 Patched (2024-04-24 r86482) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.6 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘HPiP/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘HPiP’ version ‘1.11.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HPiP’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE License stub is invalid DCF. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) getHPI.Rd:29: Lost braces 29 | then the Kronecker product is the code{(pm × qn)} block matrix | ^ * checking Rd metadata ... OK * checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘ftrCOOL’ * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed var_imp 55.527 1.899 57.480 FSmethod 52.974 1.887 54.904 corr_plot 52.807 1.963 54.849 pred_ensembel 15.204 0.317 12.766 enrichfindP 0.502 0.077 13.985 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘runTests.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/Users/biocbuild/bbs-3.20-bioc-mac-arm64/meat/HPiP.Rcheck/00check.log’ for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘HPiP’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: aarch64-apple-darwin20 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage('HPiP') No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE avNNet Loading required package: ggplot2 Loading required package: lattice Fitting Repeat 1 # weights: 103 initial value 102.978081 final value 94.038251 converged Fitting Repeat 2 # weights: 103 initial value 99.979041 iter 10 value 94.052079 iter 20 value 94.038319 final value 94.038251 converged Fitting Repeat 3 # weights: 103 initial value 95.061968 final value 93.671508 converged Fitting Repeat 4 # weights: 103 initial value 105.624299 final value 94.038251 converged Fitting Repeat 5 # weights: 103 initial value 95.802180 final value 94.052910 converged Fitting Repeat 1 # weights: 305 initial value 102.645781 final value 94.038251 converged Fitting Repeat 2 # weights: 305 initial value 100.858683 final value 94.052910 converged Fitting Repeat 3 # weights: 305 initial value 99.436642 iter 10 value 94.052910 iter 10 value 94.052910 iter 10 value 94.052910 final value 94.052910 converged Fitting Repeat 4 # weights: 305 initial value 107.494967 iter 10 value 93.405215 iter 20 value 92.357230 iter 30 value 91.645445 iter 40 value 91.213719 iter 50 value 91.147242 final value 91.147239 converged Fitting Repeat 5 # weights: 305 initial value 103.563022 final value 94.052910 converged Fitting Repeat 1 # weights: 507 initial value 113.811059 iter 10 value 93.656226 final value 93.649711 converged Fitting Repeat 2 # weights: 507 initial value 103.196922 final value 94.038251 converged Fitting Repeat 3 # weights: 507 initial value 116.059000 final value 94.052910 converged Fitting Repeat 4 # weights: 507 initial value 100.922530 iter 10 value 93.995513 final value 93.995506 converged Fitting Repeat 5 # weights: 507 initial value 142.066124 final value 94.038251 converged Fitting Repeat 1 # weights: 103 initial value 108.802688 iter 10 value 91.575046 iter 20 value 89.120123 iter 30 value 88.668054 iter 40 value 88.550574 iter 50 value 86.090444 iter 60 value 85.682010 iter 70 value 85.280326 iter 80 value 84.985997 iter 90 value 84.644633 final value 84.586402 converged Fitting Repeat 2 # weights: 103 initial value 98.070128 iter 10 value 94.070098 iter 20 value 94.056690 iter 30 value 88.929133 iter 40 value 87.926719 iter 50 value 86.458510 iter 60 value 85.386977 iter 70 value 85.367898 iter 80 value 85.355565 final value 85.355308 converged Fitting Repeat 3 # weights: 103 initial value 96.355793 iter 10 value 94.059259 iter 20 value 94.049422 iter 30 value 93.755483 iter 40 value 93.734109 iter 50 value 90.490916 iter 60 value 87.080662 iter 70 value 86.630075 iter 80 value 85.935708 iter 90 value 85.883512 iter 100 value 85.673881 final value 85.673881 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 99.894041 iter 10 value 87.565949 iter 20 value 86.352502 iter 30 value 86.195493 iter 40 value 85.693817 iter 50 value 84.935640 iter 60 value 84.827015 final value 84.826083 converged Fitting Repeat 5 # weights: 103 initial value 102.288979 iter 10 value 94.152528 iter 20 value 94.056615 iter 30 value 92.389201 iter 40 value 86.379707 iter 50 value 85.763911 iter 60 value 85.188827 iter 70 value 84.927220 iter 80 value 84.769732 iter 90 value 84.764283 iter 100 value 84.762514 final value 84.762514 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 108.555372 iter 10 value 93.981373 iter 20 value 90.842702 iter 30 value 90.217187 iter 40 value 88.687982 iter 50 value 86.998545 iter 60 value 85.628026 iter 70 value 85.360434 iter 80 value 85.156672 iter 90 value 84.721456 iter 100 value 83.654425 final value 83.654425 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 127.920021 iter 10 value 93.997110 iter 20 value 89.810154 iter 30 value 88.590940 iter 40 value 87.501438 iter 50 value 85.753108 iter 60 value 84.257542 iter 70 value 84.134519 iter 80 value 83.556209 iter 90 value 83.327168 iter 100 value 82.965902 final value 82.965902 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 99.682170 iter 10 value 94.023650 iter 20 value 88.098228 iter 30 value 85.956886 iter 40 value 85.692841 iter 50 value 85.330003 iter 60 value 84.956561 iter 70 value 84.321327 iter 80 value 83.765367 iter 90 value 83.132647 iter 100 value 82.912499 final value 82.912499 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 105.951736 iter 10 value 93.718870 iter 20 value 91.682500 iter 30 value 89.756803 iter 40 value 88.938786 iter 50 value 87.030844 iter 60 value 85.525949 iter 70 value 84.368535 iter 80 value 83.960345 iter 90 value 83.681769 iter 100 value 83.477744 final value 83.477744 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 101.028242 iter 10 value 94.341983 iter 20 value 93.482223 iter 30 value 88.229621 iter 40 value 86.561832 iter 50 value 85.997685 iter 60 value 85.554900 iter 70 value 84.979365 iter 80 value 84.888060 iter 90 value 84.154998 iter 100 value 83.740693 final value 83.740693 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 120.280864 iter 10 value 94.553809 iter 20 value 94.161304 iter 30 value 94.066559 iter 40 value 93.962874 iter 50 value 89.523751 iter 60 value 84.821040 iter 70 value 84.606805 iter 80 value 84.040859 iter 90 value 83.919494 iter 100 value 83.514726 final value 83.514726 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 116.224802 iter 10 value 94.084355 iter 20 value 93.992005 iter 30 value 90.304656 iter 40 value 88.463648 iter 50 value 86.750258 iter 60 value 85.470149 iter 70 value 84.999977 iter 80 value 84.950779 iter 90 value 84.764723 iter 100 value 84.564146 final value 84.564146 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 119.170922 iter 10 value 94.603483 iter 20 value 93.998731 iter 30 value 89.008174 iter 40 value 88.634762 iter 50 value 88.257180 iter 60 value 86.678756 iter 70 value 84.420046 iter 80 value 84.092264 iter 90 value 83.518084 iter 100 value 83.405567 final value 83.405567 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 105.728736 iter 10 value 94.121033 iter 20 value 93.021898 iter 30 value 90.455091 iter 40 value 89.565451 iter 50 value 86.791230 iter 60 value 85.664071 iter 70 value 84.280693 iter 80 value 83.970564 iter 90 value 83.955879 iter 100 value 83.913967 final value 83.913967 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 104.321561 iter 10 value 94.649441 iter 20 value 92.854005 iter 30 value 89.290467 iter 40 value 88.891229 iter 50 value 86.319636 iter 60 value 85.603918 iter 70 value 85.044780 iter 80 value 84.224065 iter 90 value 83.162664 iter 100 value 82.931447 final value 82.931447 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 104.350802 final value 94.054350 converged Fitting Repeat 2 # weights: 103 initial value 95.044209 final value 94.054632 converged Fitting Repeat 3 # weights: 103 initial value 96.442198 final value 94.054704 converged Fitting Repeat 4 # weights: 103 initial value 101.998706 iter 10 value 94.054610 iter 20 value 94.052989 iter 20 value 94.052988 iter 20 value 94.052988 final value 94.052988 converged Fitting Repeat 5 # weights: 103 initial value 96.562941 final value 94.054634 converged Fitting Repeat 1 # weights: 305 initial value 117.642053 iter 10 value 94.057814 iter 20 value 93.997214 iter 30 value 93.883386 iter 40 value 89.985571 iter 50 value 89.575298 iter 60 value 89.344532 iter 70 value 88.076326 iter 80 value 85.666166 iter 90 value 83.370016 iter 100 value 83.309030 final value 83.309030 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 99.288339 iter 10 value 94.057580 iter 20 value 94.052949 iter 30 value 91.520256 iter 40 value 90.461006 iter 50 value 90.460413 iter 60 value 88.231655 iter 70 value 88.215631 iter 80 value 88.207177 iter 90 value 85.751793 iter 100 value 85.749573 final value 85.749573 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 94.302990 iter 10 value 94.057691 iter 20 value 92.568689 iter 30 value 85.751188 final value 85.751185 converged Fitting Repeat 4 # weights: 305 initial value 122.240691 iter 10 value 94.043123 iter 20 value 94.038972 iter 30 value 94.013191 iter 40 value 88.110176 iter 50 value 84.226388 iter 60 value 83.711964 iter 70 value 83.673152 iter 80 value 83.616109 iter 90 value 83.615601 final value 83.615559 converged Fitting Repeat 5 # weights: 305 initial value 113.299310 iter 10 value 93.959391 iter 20 value 93.956613 iter 30 value 93.786566 iter 40 value 93.724418 final value 93.724393 converged Fitting Repeat 1 # weights: 507 initial value 107.325344 iter 10 value 94.066355 iter 20 value 94.009654 iter 30 value 91.396379 iter 40 value 89.981518 iter 50 value 88.261771 iter 60 value 86.058332 iter 70 value 85.090851 iter 80 value 84.129576 iter 90 value 82.432138 iter 100 value 81.599735 final value 81.599735 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 104.153496 iter 10 value 91.697681 iter 20 value 91.694152 iter 30 value 91.665451 iter 40 value 91.653591 iter 50 value 91.633914 iter 60 value 91.623321 iter 70 value 91.578734 iter 80 value 91.576654 iter 90 value 91.576179 iter 100 value 91.575951 final value 91.575951 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 115.837263 iter 10 value 94.061637 iter 20 value 93.195596 final value 85.749313 converged Fitting Repeat 4 # weights: 507 initial value 97.423592 iter 10 value 94.046693 iter 20 value 94.038656 iter 30 value 94.038264 iter 30 value 94.038263 final value 94.038263 converged Fitting Repeat 5 # weights: 507 initial value 121.163050 iter 10 value 89.014789 iter 20 value 88.589351 iter 30 value 87.859022 iter 40 value 87.553408 iter 50 value 87.372269 iter 60 value 87.366911 iter 70 value 87.363918 final value 87.363513 converged Fitting Repeat 1 # weights: 103 initial value 98.771838 final value 94.052910 converged Fitting Repeat 2 # weights: 103 initial value 102.869685 final value 93.915746 converged Fitting Repeat 3 # weights: 103 initial value 98.724367 iter 10 value 91.824626 iter 20 value 91.804329 final value 91.804173 converged Fitting Repeat 4 # weights: 103 initial value 95.480478 final value 94.052910 converged Fitting Repeat 5 # weights: 103 initial value 99.141611 final value 94.052910 converged Fitting Repeat 1 # weights: 305 initial value 113.624036 final value 94.052910 converged Fitting Repeat 2 # weights: 305 initial value 109.869776 iter 10 value 93.705405 iter 20 value 93.598177 iter 30 value 93.415474 iter 40 value 93.414026 final value 93.414007 converged Fitting Repeat 3 # weights: 305 initial value 96.851871 final value 94.052910 converged Fitting Repeat 4 # weights: 305 initial value 116.876038 final value 93.915746 converged Fitting Repeat 5 # weights: 305 initial value 95.809664 final value 93.915746 converged Fitting Repeat 1 # weights: 507 initial value 94.467328 final value 93.288889 converged Fitting Repeat 2 # weights: 507 initial value 103.385451 final value 93.915746 converged Fitting Repeat 3 # weights: 507 initial value 94.526350 iter 10 value 83.153373 iter 20 value 83.034525 iter 30 value 83.033142 final value 83.033139 converged Fitting Repeat 4 # weights: 507 initial value 106.403614 iter 10 value 93.389002 iter 20 value 90.697474 iter 30 value 90.693495 final value 90.693126 converged Fitting Repeat 5 # weights: 507 initial value 95.399449 iter 10 value 93.010560 final value 93.008017 converged Fitting Repeat 1 # weights: 103 initial value 105.618565 iter 10 value 94.057068 iter 20 value 93.804563 iter 30 value 93.646869 iter 40 value 93.411826 iter 50 value 85.788431 iter 60 value 83.952491 iter 70 value 83.307719 iter 80 value 83.291788 final value 83.291126 converged Fitting Repeat 2 # weights: 103 initial value 99.286809 iter 10 value 93.878522 iter 20 value 90.513455 iter 30 value 87.747156 iter 40 value 87.111215 iter 50 value 85.687994 iter 60 value 85.339594 iter 70 value 82.877489 iter 80 value 82.156071 iter 90 value 81.921555 iter 100 value 81.736780 final value 81.736780 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 98.600432 iter 10 value 94.055480 iter 20 value 93.648728 iter 30 value 93.641983 iter 40 value 93.638581 iter 50 value 92.823279 iter 60 value 87.279956 iter 70 value 84.188673 iter 80 value 83.706131 iter 90 value 83.636628 iter 100 value 83.608411 final value 83.608411 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 118.366298 iter 10 value 94.055563 iter 20 value 89.454044 iter 30 value 88.014288 iter 40 value 87.869796 iter 50 value 86.558986 iter 60 value 84.620510 iter 70 value 82.803745 iter 80 value 82.146127 iter 90 value 81.692743 final value 81.691393 converged Fitting Repeat 5 # weights: 103 initial value 97.782343 iter 10 value 94.055189 iter 20 value 93.707600 iter 30 value 93.639820 iter 40 value 93.639469 iter 50 value 93.638990 iter 60 value 91.394287 iter 70 value 87.114195 iter 80 value 86.761885 iter 90 value 86.220230 iter 100 value 83.759607 final value 83.759607 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 105.904309 iter 10 value 94.072589 iter 20 value 93.632271 iter 30 value 87.435419 iter 40 value 84.824909 iter 50 value 81.604905 iter 60 value 81.226434 iter 70 value 80.989767 iter 80 value 80.870306 iter 90 value 80.754765 iter 100 value 80.706870 final value 80.706870 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 106.329367 iter 10 value 94.097988 iter 20 value 93.716764 iter 30 value 90.486126 iter 40 value 88.962623 iter 50 value 85.890351 iter 60 value 83.009331 iter 70 value 82.130422 iter 80 value 81.288540 iter 90 value 80.643844 iter 100 value 80.351799 final value 80.351799 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 113.219256 iter 10 value 94.054154 iter 20 value 90.322992 iter 30 value 87.704472 iter 40 value 87.491925 iter 50 value 82.726931 iter 60 value 81.560305 iter 70 value 81.307409 iter 80 value 81.094590 iter 90 value 80.647709 iter 100 value 80.556674 final value 80.556674 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 109.317909 iter 10 value 94.179923 iter 20 value 92.640022 iter 30 value 91.834676 iter 40 value 90.106511 iter 50 value 86.433513 iter 60 value 82.544508 iter 70 value 82.119738 iter 80 value 81.482404 iter 90 value 80.588621 iter 100 value 80.425194 final value 80.425194 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 107.259984 iter 10 value 93.430307 iter 20 value 84.636202 iter 30 value 83.820312 iter 40 value 83.634103 iter 50 value 83.578066 iter 60 value 83.497889 iter 70 value 83.391060 iter 80 value 82.338963 iter 90 value 82.038089 iter 100 value 81.847106 final value 81.847106 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 112.207778 iter 10 value 94.190331 iter 20 value 91.974670 iter 30 value 89.475193 iter 40 value 89.070331 iter 50 value 86.968797 iter 60 value 86.102794 iter 70 value 84.253127 iter 80 value 83.894827 iter 90 value 83.687544 iter 100 value 83.398722 final value 83.398722 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 105.183473 iter 10 value 96.363294 iter 20 value 84.594896 iter 30 value 83.553379 iter 40 value 83.067225 iter 50 value 82.981008 iter 60 value 82.897257 iter 70 value 82.323504 iter 80 value 81.358651 iter 90 value 80.822735 iter 100 value 80.684662 final value 80.684662 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 140.064831 iter 10 value 94.565721 iter 20 value 87.666748 iter 30 value 86.681073 iter 40 value 84.500894 iter 50 value 83.423990 iter 60 value 82.008898 iter 70 value 80.915192 iter 80 value 80.249656 iter 90 value 80.083392 iter 100 value 80.049283 final value 80.049283 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 106.972961 iter 10 value 92.826335 iter 20 value 83.561568 iter 30 value 83.309586 iter 40 value 82.409517 iter 50 value 82.306512 iter 60 value 82.066608 iter 70 value 81.123027 iter 80 value 80.778615 iter 90 value 80.694784 iter 100 value 80.678670 final value 80.678670 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 109.013660 iter 10 value 96.952663 iter 20 value 86.365167 iter 30 value 84.010333 iter 40 value 83.517604 iter 50 value 83.225470 iter 60 value 81.474111 iter 70 value 80.824187 iter 80 value 80.623130 iter 90 value 80.512350 iter 100 value 80.446233 final value 80.446233 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 95.820185 final value 94.054764 converged Fitting Repeat 2 # weights: 103 initial value 98.978577 final value 94.054585 converged Fitting Repeat 3 # weights: 103 initial value 98.776183 final value 94.054584 converged Fitting Repeat 4 # weights: 103 initial value 105.125861 final value 94.054737 converged Fitting Repeat 5 # weights: 103 initial value 111.152286 iter 10 value 94.054590 iter 20 value 94.052930 final value 94.052913 converged Fitting Repeat 1 # weights: 305 initial value 108.830585 iter 10 value 94.057554 iter 20 value 93.751753 iter 30 value 93.601751 iter 30 value 93.601750 iter 30 value 93.601750 final value 93.601750 converged Fitting Repeat 2 # weights: 305 initial value 116.219283 iter 10 value 94.057505 iter 20 value 94.052913 iter 30 value 94.015234 iter 40 value 90.879944 iter 50 value 90.571576 iter 60 value 84.861240 iter 70 value 83.399254 iter 80 value 83.394482 iter 90 value 83.391960 iter 100 value 82.633252 final value 82.633252 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 114.872452 iter 10 value 93.718736 iter 20 value 93.602238 iter 30 value 93.600252 iter 40 value 93.437592 iter 50 value 93.169092 iter 60 value 93.167984 iter 70 value 93.167834 iter 80 value 93.167328 final value 93.167190 converged Fitting Repeat 4 # weights: 305 initial value 95.412327 iter 10 value 94.057227 iter 20 value 93.011560 iter 30 value 86.444535 iter 40 value 84.018180 iter 50 value 82.963797 iter 60 value 82.460433 iter 70 value 82.108110 iter 80 value 82.107426 iter 90 value 82.020724 iter 100 value 80.127133 final value 80.127133 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 106.482081 iter 10 value 93.726479 iter 20 value 93.717838 iter 30 value 93.594919 iter 40 value 93.343195 iter 50 value 83.834295 iter 60 value 82.247760 iter 70 value 81.766787 iter 80 value 81.661995 final value 81.657931 converged Fitting Repeat 1 # weights: 507 initial value 96.703313 iter 10 value 93.893706 iter 20 value 93.721980 iter 30 value 93.608496 iter 40 value 93.589499 final value 93.589496 converged Fitting Repeat 2 # weights: 507 initial value 104.899710 iter 10 value 93.721689 iter 20 value 93.720642 iter 30 value 93.714021 iter 40 value 93.678052 iter 50 value 86.170653 iter 60 value 83.094301 iter 70 value 83.073085 iter 80 value 83.066953 iter 90 value 83.064635 iter 100 value 83.059031 final value 83.059031 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 98.870343 iter 10 value 93.923823 iter 20 value 93.327694 iter 30 value 93.155966 iter 40 value 85.627067 iter 50 value 83.673438 iter 60 value 83.548275 iter 70 value 83.530839 iter 80 value 83.521326 iter 90 value 82.520916 iter 100 value 82.360889 final value 82.360889 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 98.001587 iter 10 value 90.473049 iter 20 value 88.095127 iter 30 value 87.283022 iter 40 value 87.263054 iter 50 value 86.810049 iter 60 value 86.435689 iter 70 value 86.412043 iter 80 value 86.410178 iter 90 value 86.105957 iter 100 value 84.338299 final value 84.338299 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 102.096184 iter 10 value 94.061005 iter 20 value 93.945309 iter 30 value 91.656286 iter 40 value 89.521658 iter 50 value 89.493616 iter 60 value 89.492552 iter 70 value 89.487906 iter 80 value 89.486247 iter 90 value 89.482654 iter 100 value 89.424879 final value 89.424879 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 98.950725 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 103.566824 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 95.370822 iter 10 value 94.275363 iter 10 value 94.275362 iter 10 value 94.275362 final value 94.275362 converged Fitting Repeat 4 # weights: 103 initial value 100.659286 final value 94.275362 converged Fitting Repeat 5 # weights: 103 initial value 105.126415 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 95.317948 final value 94.484211 converged Fitting Repeat 2 # weights: 305 initial value 124.194893 iter 10 value 89.132777 iter 20 value 87.093892 iter 30 value 86.688110 iter 40 value 86.683625 iter 50 value 86.683469 final value 86.683460 converged Fitting Repeat 3 # weights: 305 initial value 104.622663 final value 94.275363 converged Fitting Repeat 4 # weights: 305 initial value 107.971387 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 105.927356 iter 10 value 94.234285 iter 20 value 93.769673 iter 30 value 93.149301 iter 40 value 93.119716 iter 50 value 89.720153 iter 60 value 83.907518 iter 70 value 83.621353 iter 80 value 83.587631 iter 90 value 82.849367 iter 100 value 82.843470 final value 82.843470 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 127.256248 iter 10 value 94.275380 final value 94.275362 converged Fitting Repeat 2 # weights: 507 initial value 105.555351 final value 94.275362 converged Fitting Repeat 3 # weights: 507 initial value 104.493037 final value 94.484211 converged Fitting Repeat 4 # weights: 507 initial value 105.247301 iter 10 value 93.383119 iter 20 value 92.860381 final value 92.860100 converged Fitting Repeat 5 # weights: 507 initial value 116.769722 final value 94.275362 converged Fitting Repeat 1 # weights: 103 initial value 96.175590 iter 10 value 94.564365 iter 20 value 94.481655 iter 30 value 87.223839 iter 40 value 85.484721 iter 50 value 85.158107 iter 60 value 83.038903 iter 70 value 82.476078 final value 82.472251 converged Fitting Repeat 2 # weights: 103 initial value 106.499138 iter 10 value 94.610192 iter 20 value 94.485029 iter 30 value 93.021388 iter 40 value 90.573922 iter 50 value 87.055573 iter 60 value 86.654380 iter 70 value 86.295822 iter 80 value 84.802613 iter 90 value 83.279872 iter 100 value 82.496774 final value 82.496774 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 98.020650 iter 10 value 94.489187 iter 20 value 90.793301 iter 30 value 86.432487 iter 40 value 84.977025 iter 50 value 83.597323 iter 60 value 82.871933 iter 70 value 82.622770 iter 80 value 82.417419 iter 90 value 82.235227 final value 82.192731 converged Fitting Repeat 4 # weights: 103 initial value 101.287930 iter 10 value 94.490210 iter 20 value 94.439057 iter 30 value 94.327633 iter 40 value 94.327471 iter 50 value 91.470374 iter 60 value 87.872999 iter 70 value 87.102324 iter 80 value 85.834264 iter 90 value 85.496906 iter 100 value 85.483598 final value 85.483598 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 96.978074 iter 10 value 94.487078 iter 20 value 91.685933 iter 30 value 87.520963 iter 40 value 87.339891 iter 50 value 87.100724 iter 60 value 87.053685 iter 70 value 87.002914 iter 80 value 86.245361 iter 90 value 85.532475 iter 100 value 85.483033 final value 85.483033 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 107.900198 iter 10 value 94.444136 iter 20 value 90.430156 iter 30 value 89.070726 iter 40 value 86.095125 iter 50 value 84.774190 iter 60 value 83.440319 iter 70 value 82.499223 iter 80 value 82.056923 iter 90 value 81.839729 iter 100 value 81.644402 final value 81.644402 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 99.571356 iter 10 value 94.499040 iter 20 value 88.715112 iter 30 value 86.802709 iter 40 value 85.697756 iter 50 value 84.285366 iter 60 value 83.455799 iter 70 value 83.299617 iter 80 value 83.184519 iter 90 value 83.115433 iter 100 value 82.923087 final value 82.923087 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 103.666937 iter 10 value 94.300585 iter 20 value 93.356115 iter 30 value 89.409795 iter 40 value 87.734606 iter 50 value 84.268361 iter 60 value 82.715717 iter 70 value 81.408891 iter 80 value 80.846624 iter 90 value 80.739978 iter 100 value 80.625364 final value 80.625364 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 104.593911 iter 10 value 94.235662 iter 20 value 88.667824 iter 30 value 86.823299 iter 40 value 83.480075 iter 50 value 82.958723 iter 60 value 82.514069 iter 70 value 82.335455 iter 80 value 81.815619 iter 90 value 81.782253 iter 100 value 81.772015 final value 81.772015 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 114.638309 iter 10 value 95.198761 iter 20 value 91.365379 iter 30 value 84.115182 iter 40 value 82.804756 iter 50 value 82.074872 iter 60 value 81.758608 iter 70 value 81.684532 iter 80 value 81.375547 iter 90 value 81.131544 iter 100 value 80.973096 final value 80.973096 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 106.345074 iter 10 value 95.025931 iter 20 value 93.381757 iter 30 value 92.899605 iter 40 value 91.435358 iter 50 value 85.509863 iter 60 value 85.140229 iter 70 value 84.738569 iter 80 value 84.456813 iter 90 value 84.175651 iter 100 value 83.831134 final value 83.831134 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 104.646173 iter 10 value 96.846756 iter 20 value 94.268928 iter 30 value 91.405851 iter 40 value 87.138055 iter 50 value 83.452341 iter 60 value 82.302221 iter 70 value 81.531992 iter 80 value 81.338597 iter 90 value 81.127398 iter 100 value 81.034304 final value 81.034304 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 135.315991 iter 10 value 101.015113 iter 20 value 93.693820 iter 30 value 91.922153 iter 40 value 86.955577 iter 50 value 86.263765 iter 60 value 83.068071 iter 70 value 82.550528 iter 80 value 82.334037 iter 90 value 82.214218 iter 100 value 82.135981 final value 82.135981 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 116.312410 iter 10 value 94.657109 iter 20 value 94.253442 iter 30 value 92.794922 iter 40 value 89.462519 iter 50 value 86.405416 iter 60 value 85.358633 iter 70 value 83.947635 iter 80 value 83.693461 iter 90 value 82.628216 iter 100 value 81.149296 final value 81.149296 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 110.814216 iter 10 value 94.470593 iter 20 value 88.517208 iter 30 value 87.982802 iter 40 value 87.349067 iter 50 value 86.102848 iter 60 value 84.663035 iter 70 value 83.855228 iter 80 value 82.769282 iter 90 value 81.681953 iter 100 value 81.252685 final value 81.252685 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 103.616859 final value 94.485985 converged Fitting Repeat 2 # weights: 103 initial value 95.869483 final value 94.485848 converged Fitting Repeat 3 # weights: 103 initial value 107.348209 final value 94.486039 converged Fitting Repeat 4 # weights: 103 initial value 95.943480 final value 94.486026 converged Fitting Repeat 5 # weights: 103 initial value 101.403306 final value 94.485754 converged Fitting Repeat 1 # weights: 305 initial value 99.599067 iter 10 value 94.490002 iter 20 value 94.480369 iter 30 value 94.253967 final value 94.229762 converged Fitting Repeat 2 # weights: 305 initial value 106.326778 iter 10 value 94.489437 iter 20 value 88.125692 iter 30 value 86.745223 iter 40 value 86.108432 iter 50 value 86.105991 iter 60 value 86.027657 final value 86.027619 converged Fitting Repeat 3 # weights: 305 initial value 102.663031 iter 10 value 94.488577 iter 20 value 94.483947 iter 30 value 86.356852 final value 85.954546 converged Fitting Repeat 4 # weights: 305 initial value 107.788861 iter 10 value 94.488980 iter 20 value 94.484451 final value 94.484254 converged Fitting Repeat 5 # weights: 305 initial value 103.016958 iter 10 value 94.489005 iter 20 value 94.484329 iter 30 value 91.769718 iter 40 value 90.346163 iter 50 value 90.345209 iter 60 value 90.343259 iter 70 value 90.342836 iter 80 value 88.517304 iter 90 value 87.372740 iter 100 value 87.371093 final value 87.371093 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 104.249870 iter 10 value 94.492239 iter 20 value 94.424377 iter 30 value 94.232085 final value 94.229772 converged Fitting Repeat 2 # weights: 507 initial value 106.795406 iter 10 value 94.493245 iter 20 value 93.699435 iter 30 value 87.383224 iter 40 value 87.375362 iter 50 value 87.191189 iter 60 value 85.630992 iter 70 value 84.183726 iter 80 value 83.102537 iter 90 value 81.258212 iter 100 value 80.259554 final value 80.259554 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 100.099712 iter 10 value 94.492169 iter 20 value 94.482939 iter 30 value 93.644692 iter 40 value 88.342564 iter 50 value 83.320037 iter 60 value 81.171690 iter 70 value 81.118229 iter 80 value 81.116743 iter 90 value 80.419172 iter 100 value 80.157347 final value 80.157347 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 110.823483 iter 10 value 94.492140 iter 20 value 94.446550 iter 30 value 87.639844 iter 40 value 85.320154 iter 50 value 84.899414 iter 60 value 84.898726 final value 84.898607 converged Fitting Repeat 5 # weights: 507 initial value 102.784603 iter 10 value 93.358435 iter 20 value 92.851793 iter 30 value 92.587045 final value 92.585831 converged Fitting Repeat 1 # weights: 103 initial value 99.279036 iter 10 value 93.551691 iter 20 value 93.477434 final value 93.477395 converged Fitting Repeat 2 # weights: 103 initial value 102.798848 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 104.871057 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 95.477999 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 110.939128 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 94.521230 final value 94.484211 converged Fitting Repeat 2 # weights: 305 initial value 106.305045 iter 10 value 93.394928 iter 10 value 93.394928 iter 10 value 93.394928 final value 93.394928 converged Fitting Repeat 3 # weights: 305 initial value 102.298635 iter 10 value 93.394931 final value 93.394928 converged Fitting Repeat 4 # weights: 305 initial value 119.934821 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 96.891453 iter 10 value 93.394945 final value 93.394928 converged Fitting Repeat 1 # weights: 507 initial value 121.169476 iter 10 value 92.025542 iter 20 value 92.021611 final value 92.021513 converged Fitting Repeat 2 # weights: 507 initial value 127.672457 iter 10 value 93.394980 final value 93.394928 converged Fitting Repeat 3 # weights: 507 initial value 106.667784 final value 94.484211 converged Fitting Repeat 4 # weights: 507 initial value 101.452773 iter 10 value 91.054244 iter 20 value 90.805433 final value 90.805195 converged Fitting Repeat 5 # weights: 507 initial value 96.423151 final value 94.484211 converged Fitting Repeat 1 # weights: 103 initial value 100.124307 iter 10 value 94.480300 iter 20 value 93.479983 iter 30 value 93.026323 iter 40 value 80.719082 iter 50 value 78.270554 iter 60 value 77.926513 iter 70 value 77.814036 iter 80 value 77.626601 iter 90 value 77.150430 iter 100 value 77.066949 final value 77.066949 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 100.191552 iter 10 value 94.455778 iter 20 value 93.380728 iter 30 value 93.245860 iter 40 value 86.758248 iter 50 value 82.191688 iter 60 value 79.983835 iter 70 value 78.347185 iter 80 value 77.649086 iter 90 value 77.549549 iter 100 value 77.316549 final value 77.316549 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 97.306649 iter 10 value 93.480399 iter 20 value 89.533489 iter 30 value 83.873215 iter 40 value 79.459355 iter 50 value 79.044250 iter 60 value 78.980759 iter 70 value 78.846871 iter 80 value 78.780688 iter 90 value 77.501663 iter 100 value 77.283069 final value 77.283069 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 96.664188 iter 10 value 94.057777 iter 20 value 93.238411 iter 30 value 92.853535 iter 40 value 83.150620 iter 50 value 82.616997 iter 60 value 82.283588 iter 70 value 82.234808 iter 80 value 82.232403 final value 82.232341 converged Fitting Repeat 5 # weights: 103 initial value 101.066922 iter 10 value 94.455328 iter 20 value 89.579964 iter 30 value 88.344831 iter 40 value 82.030358 iter 50 value 81.359328 iter 60 value 80.991658 iter 70 value 80.865782 final value 80.865780 converged Fitting Repeat 1 # weights: 305 initial value 102.403304 iter 10 value 93.514832 iter 20 value 84.317175 iter 30 value 82.566174 iter 40 value 79.868406 iter 50 value 78.627007 iter 60 value 78.343476 iter 70 value 78.182041 iter 80 value 78.017151 iter 90 value 77.499847 iter 100 value 76.455279 final value 76.455279 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 109.221494 iter 10 value 93.803894 iter 20 value 93.511187 iter 30 value 86.482033 iter 40 value 82.435375 iter 50 value 82.028121 iter 60 value 81.429586 iter 70 value 80.262769 iter 80 value 79.011905 iter 90 value 77.284809 iter 100 value 76.429469 final value 76.429469 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 104.003940 iter 10 value 94.894602 iter 20 value 82.821178 iter 30 value 79.794019 iter 40 value 78.677217 iter 50 value 78.501656 iter 60 value 78.334725 iter 70 value 77.482244 iter 80 value 76.947917 iter 90 value 76.739759 iter 100 value 76.410779 final value 76.410779 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 101.643437 iter 10 value 92.922903 iter 20 value 89.648351 iter 30 value 89.071627 iter 40 value 87.459586 iter 50 value 84.125326 iter 60 value 83.468018 iter 70 value 80.856522 iter 80 value 79.797984 iter 90 value 78.276819 iter 100 value 77.895873 final value 77.895873 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 107.964521 iter 10 value 93.920264 iter 20 value 87.628783 iter 30 value 80.424710 iter 40 value 78.827415 iter 50 value 77.573066 iter 60 value 76.921128 iter 70 value 76.708487 iter 80 value 76.585040 iter 90 value 76.528035 iter 100 value 76.429188 final value 76.429188 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 106.812251 iter 10 value 94.812026 iter 20 value 92.956134 iter 30 value 79.933561 iter 40 value 79.045684 iter 50 value 78.618250 iter 60 value 77.156347 iter 70 value 76.666248 iter 80 value 76.267973 iter 90 value 75.842496 iter 100 value 75.503371 final value 75.503371 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 111.373527 iter 10 value 89.215218 iter 20 value 81.838657 iter 30 value 78.525917 iter 40 value 76.551821 iter 50 value 76.311649 iter 60 value 75.750603 iter 70 value 75.610110 iter 80 value 75.521585 iter 90 value 75.481460 iter 100 value 75.371577 final value 75.371577 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 107.284158 iter 10 value 95.695281 iter 20 value 85.999811 iter 30 value 83.206690 iter 40 value 82.261371 iter 50 value 81.431652 iter 60 value 78.639083 iter 70 value 77.771108 iter 80 value 77.341291 iter 90 value 77.115418 iter 100 value 76.777060 final value 76.777060 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 130.983963 iter 10 value 94.007362 iter 20 value 93.223905 iter 30 value 90.281557 iter 40 value 87.272171 iter 50 value 86.357956 iter 60 value 83.012604 iter 70 value 78.063656 iter 80 value 77.292019 iter 90 value 77.140288 iter 100 value 76.872837 final value 76.872837 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 121.556452 iter 10 value 94.178372 iter 20 value 93.270780 iter 30 value 92.431425 iter 40 value 87.192493 iter 50 value 82.350551 iter 60 value 80.627964 iter 70 value 79.323939 iter 80 value 78.806084 iter 90 value 78.605413 iter 100 value 78.190874 final value 78.190874 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 97.264839 final value 94.485654 converged Fitting Repeat 2 # weights: 103 initial value 99.450243 final value 94.485539 converged Fitting Repeat 3 # weights: 103 initial value 97.034363 iter 10 value 94.486015 final value 94.484296 converged Fitting Repeat 4 # weights: 103 initial value 101.079654 final value 94.324776 converged Fitting Repeat 5 # weights: 103 initial value 114.535617 final value 94.485823 converged Fitting Repeat 1 # weights: 305 initial value 98.911823 iter 10 value 94.491089 iter 20 value 89.125402 iter 30 value 82.989149 iter 40 value 82.221864 iter 50 value 81.314674 iter 60 value 81.304810 final value 81.304208 converged Fitting Repeat 2 # weights: 305 initial value 106.058909 iter 10 value 94.489378 iter 20 value 94.484533 iter 20 value 94.484533 final value 94.484533 converged Fitting Repeat 3 # weights: 305 initial value 100.824987 iter 10 value 94.487268 iter 20 value 92.954184 iter 30 value 79.886770 iter 40 value 78.438070 iter 50 value 78.224660 iter 60 value 78.159506 iter 70 value 78.088074 iter 70 value 78.088074 final value 78.088074 converged Fitting Repeat 4 # weights: 305 initial value 94.453861 iter 10 value 90.887743 iter 20 value 90.886829 iter 30 value 89.463668 iter 40 value 89.460414 iter 50 value 85.649494 iter 60 value 85.446851 iter 70 value 83.238934 iter 80 value 81.908705 iter 90 value 81.902582 final value 81.902561 converged Fitting Repeat 5 # weights: 305 initial value 102.478284 iter 10 value 94.488645 iter 20 value 94.068047 iter 30 value 86.613795 iter 40 value 86.085791 iter 50 value 85.863349 iter 60 value 85.652004 iter 70 value 84.165644 iter 80 value 82.887858 iter 90 value 82.885227 iter 100 value 81.314978 final value 81.314978 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 107.470965 iter 10 value 88.875587 iter 20 value 84.676795 iter 30 value 80.433809 iter 40 value 79.808011 iter 50 value 79.650134 iter 60 value 79.648391 iter 70 value 79.643342 iter 80 value 79.537065 iter 90 value 79.528138 iter 100 value 79.526867 final value 79.526867 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 102.461390 iter 10 value 94.492796 iter 20 value 94.457349 iter 30 value 93.592277 iter 40 value 91.083223 iter 50 value 91.050175 iter 60 value 89.733083 iter 70 value 87.141714 iter 80 value 81.581747 iter 90 value 76.898421 iter 100 value 76.093987 final value 76.093987 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 96.730689 iter 10 value 86.126124 iter 20 value 84.946545 iter 30 value 84.912141 iter 40 value 84.833273 iter 50 value 81.727851 iter 60 value 81.050483 iter 70 value 80.947207 iter 80 value 80.780921 iter 90 value 77.384308 iter 100 value 76.708346 final value 76.708346 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 122.542212 iter 10 value 93.736410 iter 20 value 93.439161 iter 30 value 93.404677 iter 40 value 93.396273 iter 50 value 93.137969 iter 60 value 90.522133 iter 70 value 83.648893 iter 80 value 82.035281 iter 90 value 82.000032 iter 100 value 81.996516 final value 81.996516 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 102.568045 iter 10 value 93.271021 iter 20 value 91.964499 iter 30 value 91.790678 iter 40 value 91.787520 iter 50 value 91.785127 iter 60 value 90.898075 iter 70 value 90.846274 iter 80 value 90.845870 iter 90 value 90.845828 iter 100 value 88.748079 final value 88.748079 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 96.816253 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 96.967602 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 99.304822 iter 10 value 94.430315 final value 94.430234 converged Fitting Repeat 4 # weights: 103 initial value 101.549062 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 96.725279 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 99.751323 final value 94.484211 converged Fitting Repeat 2 # weights: 305 initial value 94.899521 final value 94.484211 converged Fitting Repeat 3 # weights: 305 initial value 99.670012 final value 94.484211 converged Fitting Repeat 4 # weights: 305 initial value 138.040324 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 95.306508 final value 94.484211 converged Fitting Repeat 1 # weights: 507 initial value 104.850088 final value 94.467391 converged Fitting Repeat 2 # weights: 507 initial value 108.072691 final value 94.467391 converged Fitting Repeat 3 # weights: 507 initial value 111.687731 final value 94.449438 converged Fitting Repeat 4 # weights: 507 initial value 100.707337 final value 94.484211 converged Fitting Repeat 5 # weights: 507 initial value 115.563390 iter 10 value 94.431636 final value 94.430233 converged Fitting Repeat 1 # weights: 103 initial value 96.088399 iter 10 value 94.467568 iter 20 value 92.326574 iter 30 value 88.950090 iter 40 value 82.159790 iter 50 value 81.853882 iter 60 value 81.379446 iter 70 value 81.329324 final value 81.328520 converged Fitting Repeat 2 # weights: 103 initial value 96.116516 iter 10 value 93.384477 iter 20 value 84.882920 iter 30 value 83.484154 iter 40 value 83.022988 iter 50 value 82.272643 iter 60 value 81.905920 iter 70 value 80.710932 iter 80 value 80.244859 iter 90 value 80.020669 iter 100 value 79.711360 final value 79.711360 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 102.357525 iter 10 value 94.488174 iter 20 value 92.799496 iter 30 value 91.937403 iter 40 value 86.677975 iter 50 value 85.217069 iter 60 value 82.870226 iter 70 value 82.609557 iter 80 value 82.040617 iter 90 value 81.208726 iter 100 value 81.100363 final value 81.100363 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 98.708191 iter 10 value 94.194648 iter 20 value 90.076608 iter 30 value 83.030609 iter 40 value 82.068187 iter 50 value 81.365430 iter 60 value 81.111270 iter 70 value 81.099648 final value 81.099648 converged Fitting Repeat 5 # weights: 103 initial value 102.244730 iter 10 value 94.504056 iter 20 value 94.454623 iter 30 value 86.921233 iter 40 value 84.623432 iter 50 value 82.281007 iter 60 value 81.366405 iter 70 value 81.150703 iter 80 value 80.992214 iter 90 value 80.610501 iter 100 value 79.799499 final value 79.799499 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 117.016115 iter 10 value 94.752225 iter 20 value 94.502669 iter 30 value 92.206365 iter 40 value 86.837963 iter 50 value 85.567573 iter 60 value 80.452970 iter 70 value 79.267896 iter 80 value 78.836137 iter 90 value 78.666034 iter 100 value 78.559505 final value 78.559505 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 99.775826 iter 10 value 94.273795 iter 20 value 89.087118 iter 30 value 84.951922 iter 40 value 83.933739 iter 50 value 82.893416 iter 60 value 82.645464 iter 70 value 82.511650 iter 80 value 81.367278 iter 90 value 79.401422 iter 100 value 78.890360 final value 78.890360 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 101.835169 iter 10 value 94.578151 iter 20 value 93.731994 iter 30 value 91.989276 iter 40 value 87.702490 iter 50 value 87.179830 iter 60 value 87.035871 iter 70 value 85.280121 iter 80 value 84.231621 iter 90 value 83.455673 iter 100 value 82.838403 final value 82.838403 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 103.995904 iter 10 value 95.364375 iter 20 value 89.379385 iter 30 value 84.001198 iter 40 value 83.271832 iter 50 value 82.214673 iter 60 value 80.772218 iter 70 value 80.107406 iter 80 value 79.620268 iter 90 value 79.267750 iter 100 value 79.076343 final value 79.076343 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 104.176006 iter 10 value 94.499350 iter 20 value 88.417314 iter 30 value 84.529172 iter 40 value 79.968844 iter 50 value 79.579877 iter 60 value 79.356123 iter 70 value 78.929972 iter 80 value 78.733383 iter 90 value 78.692889 iter 100 value 78.614547 final value 78.614547 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 104.203368 iter 10 value 97.576825 iter 20 value 92.229551 iter 30 value 89.802590 iter 40 value 85.301428 iter 50 value 83.276470 iter 60 value 82.852239 iter 70 value 81.051593 iter 80 value 79.684617 iter 90 value 78.764302 iter 100 value 78.464473 final value 78.464473 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 117.145441 iter 10 value 94.430041 iter 20 value 86.132178 iter 30 value 83.171419 iter 40 value 82.433814 iter 50 value 82.260117 iter 60 value 81.589829 iter 70 value 80.672005 iter 80 value 80.467102 iter 90 value 79.856518 iter 100 value 79.128015 final value 79.128015 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 103.898298 iter 10 value 95.130377 iter 20 value 94.532850 iter 30 value 94.514113 iter 40 value 94.288539 iter 50 value 88.083362 iter 60 value 86.061467 iter 70 value 84.108565 iter 80 value 83.597680 iter 90 value 80.804890 iter 100 value 79.002611 final value 79.002611 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 118.239093 iter 10 value 94.585553 iter 20 value 94.455357 iter 30 value 89.007059 iter 40 value 87.734098 iter 50 value 87.369554 iter 60 value 84.944745 iter 70 value 82.639390 iter 80 value 82.197258 iter 90 value 80.251972 iter 100 value 79.352610 final value 79.352610 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 123.183854 iter 10 value 95.107158 iter 20 value 94.738613 iter 30 value 93.272373 iter 40 value 87.217892 iter 50 value 83.313661 iter 60 value 82.322953 iter 70 value 80.886836 iter 80 value 80.051636 iter 90 value 79.986602 iter 100 value 79.831623 final value 79.831623 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 95.792590 iter 10 value 94.499903 iter 20 value 94.469023 iter 30 value 94.467712 iter 40 value 93.184648 iter 50 value 93.156258 iter 60 value 89.279526 iter 70 value 83.596232 iter 80 value 83.086843 iter 90 value 83.070624 iter 100 value 83.043467 final value 83.043467 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 95.478407 final value 94.485775 converged Fitting Repeat 3 # weights: 103 initial value 104.457796 final value 94.486963 converged Fitting Repeat 4 # weights: 103 initial value 98.255064 final value 94.486040 converged Fitting Repeat 5 # weights: 103 initial value 95.512224 iter 10 value 94.486169 iter 20 value 94.484259 iter 30 value 94.317231 iter 40 value 89.355510 iter 50 value 89.320971 iter 60 value 84.130814 iter 70 value 84.128996 iter 80 value 84.127600 iter 90 value 84.127422 iter 90 value 84.127421 iter 90 value 84.127421 final value 84.127421 converged Fitting Repeat 1 # weights: 305 initial value 101.595842 iter 10 value 94.488862 iter 20 value 94.483368 iter 30 value 92.318715 iter 40 value 91.740278 iter 50 value 87.399752 iter 60 value 85.185323 iter 70 value 84.165104 iter 80 value 84.105230 iter 90 value 83.949461 iter 100 value 83.854934 final value 83.854934 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 101.996381 iter 10 value 92.645671 iter 20 value 92.643634 iter 30 value 92.597142 iter 40 value 91.855584 iter 50 value 91.131308 iter 60 value 90.871550 iter 70 value 90.834133 iter 80 value 90.833523 iter 90 value 90.790268 iter 100 value 90.732824 final value 90.732824 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 102.662649 iter 10 value 94.489416 iter 20 value 94.452924 iter 30 value 82.121169 iter 40 value 82.085009 iter 50 value 81.681700 iter 60 value 81.663295 iter 70 value 81.659417 final value 81.659415 converged Fitting Repeat 4 # weights: 305 initial value 111.200734 iter 10 value 94.489443 iter 20 value 94.440609 iter 30 value 82.196621 iter 40 value 81.590462 iter 50 value 80.773781 iter 60 value 78.686846 iter 70 value 78.643008 iter 80 value 78.640663 iter 90 value 78.640579 final value 78.640528 converged Fitting Repeat 5 # weights: 305 initial value 96.718009 iter 10 value 94.489131 iter 20 value 94.484322 iter 30 value 88.772829 iter 40 value 81.704757 iter 50 value 81.684044 final value 81.683966 converged Fitting Repeat 1 # weights: 507 initial value 99.871789 iter 10 value 94.490938 iter 20 value 94.468171 iter 30 value 87.760072 iter 40 value 87.724684 iter 50 value 81.200284 iter 60 value 80.867953 iter 70 value 80.863881 iter 80 value 80.863676 iter 90 value 80.863042 iter 100 value 80.706385 final value 80.706385 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 131.274206 iter 10 value 94.475575 iter 20 value 94.469608 iter 30 value 90.767819 iter 40 value 84.635476 iter 50 value 83.141973 iter 60 value 82.853154 iter 70 value 82.614686 iter 80 value 81.737263 iter 90 value 80.672225 iter 100 value 80.656530 final value 80.656530 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 119.323220 iter 10 value 94.097128 iter 20 value 94.089791 final value 94.089453 converged Fitting Repeat 4 # weights: 507 initial value 105.317290 iter 10 value 87.070420 iter 20 value 86.690631 iter 30 value 86.020911 iter 40 value 85.940859 iter 50 value 85.940265 iter 60 value 85.937168 iter 70 value 85.934438 iter 80 value 85.829854 iter 90 value 84.261492 iter 100 value 83.264657 final value 83.264657 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 96.241505 iter 10 value 94.491834 iter 20 value 94.475034 iter 30 value 93.771271 iter 40 value 89.380489 iter 50 value 85.854546 iter 60 value 84.706752 iter 70 value 84.456690 iter 80 value 82.995961 iter 90 value 82.508602 iter 100 value 82.319565 final value 82.319565 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 145.300260 iter 10 value 117.768008 iter 20 value 117.737743 iter 30 value 117.730815 final value 117.729130 converged Fitting Repeat 2 # weights: 507 initial value 147.596449 iter 10 value 117.898101 iter 20 value 117.864448 iter 30 value 117.521349 final value 117.512166 converged Fitting Repeat 3 # weights: 507 initial value 146.545928 iter 10 value 117.898873 iter 20 value 117.758369 iter 30 value 108.574215 iter 40 value 108.529877 iter 50 value 105.126492 iter 60 value 104.830892 iter 70 value 104.812269 iter 80 value 104.811850 iter 80 value 104.811850 iter 80 value 104.811850 final value 104.811850 converged Fitting Repeat 4 # weights: 507 initial value 128.281412 iter 10 value 117.898949 iter 20 value 117.510448 iter 30 value 112.517808 iter 40 value 109.724499 iter 50 value 109.125275 iter 60 value 108.832932 iter 70 value 108.814867 iter 80 value 107.896603 iter 90 value 106.955162 iter 100 value 105.075376 final value 105.075376 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 147.722761 iter 10 value 117.766662 iter 20 value 117.762124 iter 30 value 117.759764 final value 117.207076 converged svmRadial ranger Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases RUNIT TEST PROTOCOL -- Sun May 19 16:17:04 2024 *********************************************** Number of test functions: 7 Number of errors: 0 Number of failures: 0 1 Test Suite : HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures Number of test functions: 7 Number of errors: 0 Number of failures: 0 Warning messages: 1: `repeats` has no meaning for this resampling method. 2: executing %dopar% sequentially: no parallel backend registered > > > > > proc.time() user system elapsed 47.979 1.234 52.040
HPiP.Rcheck/HPiP-Ex.timings
name | user | system | elapsed | |
FSmethod | 52.974 | 1.887 | 54.904 | |
FreqInteractors | 0.250 | 0.014 | 0.264 | |
calculateAAC | 0.045 | 0.009 | 0.054 | |
calculateAutocor | 0.408 | 0.056 | 0.465 | |
calculateCTDC | 0.085 | 0.005 | 0.089 | |
calculateCTDD | 0.560 | 0.026 | 0.586 | |
calculateCTDT | 0.248 | 0.008 | 0.256 | |
calculateCTriad | 0.446 | 0.030 | 0.476 | |
calculateDC | 0.097 | 0.010 | 0.107 | |
calculateF | 0.316 | 0.012 | 0.328 | |
calculateKSAAP | 0.097 | 0.010 | 0.108 | |
calculateQD_Sm | 1.984 | 0.165 | 2.148 | |
calculateTC | 1.702 | 0.162 | 1.865 | |
calculateTC_Sm | 0.355 | 0.029 | 0.384 | |
corr_plot | 52.807 | 1.963 | 54.849 | |
enrichfindP | 0.502 | 0.077 | 13.985 | |
enrichfind_hp | 0.072 | 0.011 | 0.689 | |
enrichplot | 0.374 | 0.010 | 0.384 | |
filter_missing_values | 0.001 | 0.001 | 0.001 | |
getFASTA | 0.089 | 0.016 | 0.689 | |
getHPI | 0.000 | 0.000 | 0.001 | |
get_negativePPI | 0.002 | 0.000 | 0.002 | |
get_positivePPI | 0 | 0 | 0 | |
impute_missing_data | 0.002 | 0.000 | 0.002 | |
plotPPI | 0.076 | 0.008 | 0.083 | |
pred_ensembel | 15.204 | 0.317 | 12.766 | |
var_imp | 55.527 | 1.899 | 57.480 | |